Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0013829

Physical Location & Seq

Genomic Coordinates Reverse (-)

56245322 .. 56247351

Gene Structure 2030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G029580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGCCTCCAATCTTGCCGGACTTCTCCAACTCCGTCAAGCTCAAGTATGTCAAACTCGGGTACCAATACCTCGTGAACCATTTCCTCACCCTAGCTCTAGTTCCTATAATGGCCGGGATTTTTCTCGAGGTTCTACGCATCGGCCCGGAGGAGGTTCTAAACTTGTGGACCTCCCTCCACTTGGATCTCGTCCAAATCCTCTGCTCCTCTTTCCTCATCATATTCATCGCCACTGTCTACTTCATGTCTAAGCCACGAACCATCTACCTCGTCGACTACGCTTGCTACAAGCCACCTGTTACCTGCCGCGTCCCCTTCTCCACATTTATGGAACACTCCCGCCTCATCCTCAGCAACAACCCTAAGAGCGTCGAGTTCCAGATGAGGATCCTCGAGCGCTCTGGTCTTGGGGAAGAGACTTGCCTTCCCCCAGCCATTCACTACATCCCTCCCCAACCCACCATGGAGGCTGCGAGGGGCGAGGCGGAGCTCGTCATATTCTCTGCAATGGACTCTCTTTTTGAGAAGACCGGCCTTAAACCTAAAGACATAGATATTCTGATCGTCAATTGCAGCCTGTTCTCGCCGACTCCTTCTTTGTCGGCGATGGTGATCAACAAGTACAAGCTCCGAAGTAACATCCGGAGCTTCAACTTGTCCGGCATGGGGTGCAGCGCCGGTCTCATATCCATCGACTTGGCACGTGACCTTCTTCAGGTTCATCCTAACTCAAATGCGGTGGTGGTCAGTACGGAGATCATAACTCCGAATTATTACCAAGGAAAAGAGAGGGCTATGCTTTTGCCCAACTGCCTCTTCCGTATGGGTGGGGCCGCCATACTCTTGTCCAACCGTAGATCTGAGAGCCGACGTGCCAAGTACAGGTTGGTCCACGTCGTCCGAACCCACAAGGGAGCCGACGACAAGGCCTACCGCTGCGTGTTCGAGGAGGAAGACAGGGAGGGCAAGGTCGGAATTTCACTCCAAAAAGATCTGATGGCCATTGCCGGCGAGGCCCTGAAATCCAACATCACCACTATCGGTCCTCTAGTACTTCCGGCGTCGGAGCAGCTCCTCTTCCTGCTAACCCTCATCGGAAGAAAGATAGTGAACCCCAAGTGGAAGCCTTACATTCCAGACTTCAAGCAGGCGTTCGAGCACTTCTGCATCCACGCTGGAGGTCGAGCCGTTATCGACGAGCTTCAGAAGAATCTACAGTTGTCGGCGGAGCACTGCGAGGCGTCGAGGATGACGCTGCACAGGTTCGGCAATACGTCGTCGTCTTCTCTTTGGTACGAGTTGGGGTACATTGAGGCCAAGGGGAGGATGAGGAAGGGAGATAGGGTTTGGCAGATTGCGTTTGGGAGTGGGTTTAAGTGCAACAGCGCCGTGTGGAAGTGTAACCGGACCATCAAGACGGCGGCTAATGATGATGGGCCCTGGGCCGATTGTATTGAAAGGTACCCGGTTCATATTCCTGAAGTCGTCAAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009653 GO:0009826 GO:0009856 GO:0009922 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016746 GO:0016747 GO:0022414 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051704 GO:0060560 GO:0071704 GO:0071840 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

498

Amino Acids

56.05

Weight (kDa)

8.96

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAE1_CUT1_RppA	PF08392	80 - 368	9.1e-139	FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C	PF08541	386 - 466	7.1e-12	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C	PF02797	388 - 459	9.9e-09	Chalcone and stilbene synthases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25450 AT1G68530
fragaria_vesca	FvH4_4g27420
malus_domestica	MD13G1042400.v1.1 MD16G1043300.v1.1
prunus_persica	Prupe.1G310500_v2.0.a1
pyrus_communis	pycom13g03670 pycom13g03690 pycom16g03740
rosa_chinensis	RchiOBHm_Chr4g0435241
rosa_laevigata	RLG00000006606
rosa_multiflora	Rmu_ssc0000339.1_g000014
rosa_roxburghii	Rroxscaffold_5G00376470
rosa_rugosa	Rorug04G0283600
rosa_samantha	Rh4AG339100 Rh4DG341700
rosa_wichuraiana	Rw4G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	311
Acc65I	GGTACC	2 cut(s)	60, 1461
AccB1I	GGYRCC	2 cut(s)	60, 1461
AccI	GTMKAC	2 cut(s)	237, 273
AccII	CGCG	1 cut(s)	309
AccIII	TCCGGA	1 cut(s)	642
AciI	CCGC	8 cut(s)	307, 340, 485, 737, 834, 934, 1226, 1421
AclWI	GGATC	3 cut(s)	192, 382, 395
AcoI	YGGCCR	2 cut(s)	111, 999
AcsI	RAATTY	1 cut(s)	975
AcuI	CTGAAG	2 cut(s)	698, 1187
AcvI	CACGTG	1 cut(s)	704
AcyI	GRCGYC	2 cut(s)	1061, 1241
AfaI	GTAC	8 cut(s)	62, 623, 751, 881, 1053, 1295, 1307, 1463
AfeI	AGCGCT	1 cut(s)	398
AfiI	CCNNNNNNNGG	6 cut(s)	151, 181, 666, 715, 882, 1323
AgsI	TTSAA	3 cut(s)	652, 1144, 1457
AjiI	CACGTC	2 cut(s)	872, 895
AjnI	CCWGG	1 cut(s)	1439
AjuI	GAANNNNNNNTTGG	2 cut(s)	800, 832
AluBI	AGCT	7 cut(s)	40, 95, 490, 628, 648, 1072, 1201
AluI	AGCT	7 cut(s)	40, 95, 490, 628, 648, 1072, 1201
Alw21I	GWGCWC	3 cut(s)	492, 1161, 1233
Alw26I	GTCTC	2 cut(s)	410, 686
AlwI	GGATC	3 cut(s)	192, 382, 395
Ama87I	CYCGRG	3 cut(s)	56, 125, 392
Aor13HI	TCCGGA	1 cut(s)	642
Aor51HI	AGCGCT	1 cut(s)	398
ApaI	GGGCCC	1 cut(s)	1440
ApeKI	GCWGC	6 cut(s)	470, 573, 672, 936, 1069, 1255
ApoI	RAATTY	1 cut(s)	975
ArsI	GACNNNNNNTTYG	4 cut(s)	503, 535, 580, 612
Asp700I	GAANNNNTTC	1 cut(s)	80
Asp718I	GGTACC	2 cut(s)	60, 1461
AspLEI	GCGC	3 cut(s)	399, 677, 1388
AsuC2I	CCSGG	3 cut(s)	115, 146, 1466
AsuHPI	GGTGA	3 cut(s)	79, 622, 1024
AvaI	CYCGRG	3 cut(s)	56, 125, 392
AvaII	GGWCC	4 cut(s)	168, 889, 1043, 1407
BaeGI	GKGCMC	1 cut(s)	1440
BaeI	ACNNNNGTAYC	2 cut(s)	44, 77
BalI	TGGCCA	1 cut(s)	1001
BamHI	GGATCC	1 cut(s)	387
BanI	GGYRCC	2 cut(s)	60, 1461
BanII	GRGCYC	2 cut(s)	492, 1440
BauI	CACGAG	1 cut(s)	71
BbrPI	CACGTG	1 cut(s)	704
BbsI	GAAGAC	3 cut(s)	533, 960, 1275
Bbv12I	GWGCWC	3 cut(s)	492, 1161, 1233
BbvCI	CCTCAGC	1 cut(s)	350
BbvI	GCAGC	6 cut(s)	457, 585, 684, 923, 1081, 1242
BccI	CCATC	6 cut(s)	269, 601, 698, 991, 1418, 1427
BceAI	ACGGC	3 cut(s)	1172, 1373, 1434
BciT130I	CCWGG	1 cut(s)	1441
BclI	TGATCA	1 cut(s)	612
BcnI	CCSGG	3 cut(s)	115, 146, 1466
BcoDI	GTCTC	2 cut(s)	410, 686
BfaI	CTAG	4 cut(s)	92, 98, 1049, 1495
BfmI	CTRYAG	1 cut(s)	1214
BfoI	RGCGCY	3 cut(s)	400, 678, 1389
BfuAI	ACCTGC	1 cut(s)	311
BglI	GCCNNNNNGGC	1 cut(s)	1013
BglII	AGATCT	2 cut(s)	857, 991
BisI	GCNGC	9 cut(s)	307, 471, 574, 673, 834, 937, 1070, 1256, 1422
BlsI	GCNGC	9 cut(s)	308, 472, 575, 674, 835, 938, 1071, 1257, 1423
BmcAI	AGTACT	1 cut(s)	1053
Bme1390I	CCNGG	4 cut(s)	115, 146, 1441, 1466
Bme18I	GGWCC	4 cut(s)	168, 889, 1043, 1407
BmeT110I	CYCGRG	3 cut(s)	56, 125, 392
BmgBI	CACGTC	2 cut(s)	872, 895
BmiI	GGNNCC	6 cut(s)	62, 389, 832, 916, 1438, 1463
BmrFI	CCNGG	4 cut(s)	115, 146, 1441, 1466
BmsI	GCATC	2 cut(s)	147, 1176
BpiI	GAAGAC	3 cut(s)	533, 960, 1275
BpmI	CTGGAG	1 cut(s)	1197
Bpu10I	CCTNAGC	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	26
BpuMI	CCSGG	3 cut(s)	115, 146, 1466
BsaAI	YACGTR	1 cut(s)	704
BsaBI	GATNNNNATC	2 cut(s)	386, 611
BsaHI	GRCGYC	2 cut(s)	1061, 1241
BsaI	GGTCTC	1 cut(s)	686
BsaJI	CCNNGG	5 cut(s)	462, 778, 1317, 1439, 1440
BsaWI	WCCGGW	2 cut(s)	642, 1404
BsaXI	ACNNNNNCTCC	2 cut(s)	1329, 1359
Bsc4I	CCNNNNNNNGG	6 cut(s)	151, 181, 666, 715, 882, 1323
Bse118I	RCCGGY	3 cut(s)	530, 677, 1007
Bse3DI	GCAATG	2 cut(s)	513, 1002
Bse8I	GATNNNNATC	2 cut(s)	386, 611
BseAI	TCCGGA	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	1441
BseDI	CCNNGG	5 cut(s)	462, 778, 1317, 1439, 1440
BseGI	GGATG	7 cut(s)	345, 444, 639, 721, 1167, 1254, 1332
BseJI	GATNNNNATC	2 cut(s)	386, 611
BseLI	CCNNNNNNNGG	6 cut(s)	151, 181, 666, 715, 882, 1323
BseMI	GCAATG	2 cut(s)	513, 1002
BseMII	CTCAG	2 cut(s)	364, 852
BseRI	GAGGAG	4 cut(s)	164, 196, 962, 1064
BseSI	GKGCMC	1 cut(s)	1440
BseXI	GCAGC	6 cut(s)	457, 585, 684, 923, 1081, 1242
BseYI	CCCAGC	1 cut(s)	430
BsgI	GTGCAG	2 cut(s)	691, 1241
Bsh1236I	CGCG	1 cut(s)	309
BshNI	GGYRCC	2 cut(s)	60, 1461
BsiHKAI	GWGCWC	3 cut(s)	492, 1161, 1233
BsiHKCI	CYCGRG	3 cut(s)	56, 125, 392
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	6 cut(s)	151, 181, 666, 715, 882, 1323
BsmAI	GTCTC	2 cut(s)	410, 686
BsmFI	GGGAC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	686
BsoBI	CYCGRG	3 cut(s)	56, 125, 392
Bsp120I	GGGCCC	1 cut(s)	1436
Bsp1286I	GDGCHC	4 cut(s)	492, 1161, 1233, 1440
Bsp13I	TCCGGA	1 cut(s)	642
Bsp143I	GATC	7 cut(s)	184, 387, 561, 612, 756, 857, 991
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	8 cut(s)	307, 340, 485, 737, 834, 934, 1226, 1421
BspCNI	CTCAG	2 cut(s)	363, 853
BspEI	TCCGGA	1 cut(s)	642
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	6 cut(s)	62, 389, 832, 916, 1438, 1463
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	3 cut(s)	192, 382, 395
BspT107I	GGYRCC	2 cut(s)	60, 1461
BspTNI	GGTCTC	1 cut(s)	686
BsrDI	GCAATG	2 cut(s)	513, 1002
BsrFI	RCCGGY	3 cut(s)	530, 677, 1007
BssAI	RCCGGY	3 cut(s)	530, 677, 1007
BssECI	CCNNGG	5 cut(s)	462, 778, 1317, 1439, 1440
BssMI	GATC	7 cut(s)	184, 387, 561, 612, 756, 857, 991
BssNI	GRCGYC	2 cut(s)	1061, 1241
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	3 cut(s)	462, 778, 1317
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	1441
Bst4CI	ACNGT	3 cut(s)	235, 854, 1218
Bst6I	CTCTTC	3 cut(s)	408, 821, 1082
BstACI	GRCGYC	2 cut(s)	1061, 1241
BstAPI	GCANNNNNTGC	1 cut(s)	669
BstBAI	YACGTR	1 cut(s)	704
BstC8I	GCNNGC	3 cut(s)	283, 1009, 1149
BstDEI	CTNAG	4 cut(s)	249, 350, 363, 861
BstDSI	CCRYGG	1 cut(s)	462
BstENI	CCTNNNNNAGG	1 cut(s)	713
BstF5I	GGATG	7 cut(s)	345, 444, 639, 721, 1167, 1254, 1332
BstFNI	CGCG	1 cut(s)	309
BstH2I	RGCGCY	3 cut(s)	400, 678, 1389
BstHHI	GCGC	3 cut(s)	399, 677, 1388
BstKTI	GATC	7 cut(s)	187, 390, 564, 615, 759, 860, 994
BstMAI	GTCTC	2 cut(s)	410, 686
BstMBI	GATC	7 cut(s)	184, 387, 561, 612, 756, 857, 991
BstMWI	GCNNNNNNNGC	2 cut(s)	669, 1013
BstNI	CCWGG	1 cut(s)	1441
BstSCI	CCNGG	4 cut(s)	113, 144, 1439, 1464
BstSFI	CTRYAG	1 cut(s)	1214
BstSLI	GKGCMC	1 cut(s)	1440
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	6 cut(s)	457, 585, 684, 923, 1081, 1242
BstV2I	GAAGAC	3 cut(s)	533, 960, 1275
BstX2I	RGATCY	4 cut(s)	184, 387, 857, 991
BstXI	CCANNNNNNTGG	2 cut(s)	328, 697
BstYI	RGATCY	4 cut(s)	184, 387, 857, 991
BtgI	CCRYGG	1 cut(s)	462
BtgZI	GCGATG	2 cut(s)	211, 620
BtrI	CACGTC	2 cut(s)	872, 895
BtsCI	GGATG	7 cut(s)	345, 444, 639, 721, 1167, 1254, 1332
BtsI	GCAGTG	1 cut(s)	1231
BtsIMutI	CAGTG	2 cut(s)	231, 1231
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	3 cut(s)	283, 1009, 1149
CfoI	GCGC	3 cut(s)	399, 677, 1388
Cfr10I	RCCGGY	3 cut(s)	530, 677, 1007
CseI	GACGC	5 cut(s)	298, 358, 1050, 1230, 1261
Csp6I	GTAC	8 cut(s)	61, 622, 750, 880, 1052, 1294, 1306, 1462
CspCI	CAANNNNNGTGG	2 cut(s)	720, 755
CviAII	CATG	3 cut(s)	244, 463, 664
CviQI	GTAC	8 cut(s)	61, 622, 750, 880, 1052, 1294, 1306, 1462
DdeI	CTNAG	4 cut(s)	249, 350, 363, 861
DpnI	GATC	7 cut(s)	186, 389, 563, 614, 758, 859, 993
DpnII	GATC	7 cut(s)	184, 387, 561, 612, 756, 857, 991
EaeI	YGGCCR	2 cut(s)	111, 999
Eam1104I	CTCTTC	3 cut(s)	408, 821, 1082
EarI	CTCTTC	3 cut(s)	408, 821, 1082
EciI	GGCGGA	2 cut(s)	500, 1241
Ecl136II	GAGCTC	1 cut(s)	490
Eco130I	CCWWGG	3 cut(s)	462, 778, 1317
Eco147I	AGGCCT	1 cut(s)	929
Eco24I	GRGCYC	2 cut(s)	492, 1440
Eco31I	GGTCTC	1 cut(s)	686
Eco47I	GGWCC	4 cut(s)	168, 889, 1043, 1407
Eco47III	AGCGCT	1 cut(s)	398
Eco53kI	GAGCTC	1 cut(s)	490
Eco57I	CTGAAG	2 cut(s)	698, 1187
Eco72I	CACGTG	1 cut(s)	704
Eco88I	CYCGRG	3 cut(s)	56, 125, 392
EcoICRI	GAGCTC	1 cut(s)	490
EcoNI	CCTNNNNNAGG	1 cut(s)	713
EcoO109I	RGGNCCY	2 cut(s)	1015, 1437
EcoRII	CCWGG	1 cut(s)	1439
EcoT14I	CCWWGG	3 cut(s)	462, 778, 1317
EcoT38I	GRGCYC	2 cut(s)	492, 1440
ErhI	CCWWGG	3 cut(s)	462, 778, 1317
FaeI	CATG	3 cut(s)	247, 466, 667
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	3 cut(s)	243, 462, 663
FauI	CCCGC	1 cut(s)	347
FbaI	TGATCA	1 cut(s)	612
FblI	GTMKAC	2 cut(s)	237, 273
Fnu4HI	GCNGC	9 cut(s)	307, 471, 574, 673, 834, 937, 1070, 1256, 1422
FokI	GGATG	7 cut(s)	332, 431, 626, 708, 1154, 1261, 1339
FriOI	GRGCYC	2 cut(s)	492, 1440
Fsp4HI	GCNGC	9 cut(s)	307, 471, 574, 673, 834, 937, 1070, 1256, 1422
FspBI	CTAG	4 cut(s)	92, 98, 1049, 1495
GlaI	GCGC	3 cut(s)	398, 676, 1387
GluI	GCNGC	9 cut(s)	307, 471, 574, 673, 834, 937, 1070, 1256, 1422
GsaI	CCCAGC	1 cut(s)	434
GsuI	CTGGAG	1 cut(s)	1197
HaeII	RGCGCY	3 cut(s)	400, 678, 1389
HgaI	GACGC	5 cut(s)	298, 358, 1050, 1230, 1261
HhaI	GCGC	3 cut(s)	399, 677, 1388
Hin1I	GRCGYC	2 cut(s)	1061, 1241
Hin1II	CATG	3 cut(s)	247, 466, 667
Hin6I	GCGC	3 cut(s)	397, 675, 1386
HinP1I	GCGC	3 cut(s)	397, 675, 1386
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	3 cut(s)	512, 589, 1210
HphI	GGTGA	3 cut(s)	79, 622, 1024
Hpy166II	GTNNAC	6 cut(s)	76, 168, 238, 274, 892, 1111
Hpy188III	TCNNGA	7 cut(s)	73, 125, 379, 643, 1136, 1414, 1478
Hpy8I	GTNNAC	6 cut(s)	76, 168, 238, 274, 892, 1111
HpyAV	CCTTC	5 cut(s)	325, 434, 603, 719, 1327
HpyCH4III	ACNGT	3 cut(s)	235, 854, 1218
HpyCH4IV	ACGT	4 cut(s)	703, 871, 894, 1274
HpyCH4V	TGCA	6 cut(s)	506, 573, 672, 1167, 1258, 1380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	669, 1013
HpyF3I	CTNAG	4 cut(s)	249, 350, 363, 861
HpySE526I	ACGT	4 cut(s)	703, 871, 894, 1274
Hsp92I	GRCGYC	2 cut(s)	1061, 1241
Hsp92II	CATG	3 cut(s)	247, 466, 667
HspAI	GCGC	3 cut(s)	397, 675, 1386
Kpn2I	TCCGGA	1 cut(s)	642
KpnI	GGTACC	2 cut(s)	64, 1465
KroI	GCCGGC	1 cut(s)	1007
KroNI	GCCGGC	1 cut(s)	1009
Ksp22I	TGATCA	1 cut(s)	612
Kzo9I	GATC	7 cut(s)	184, 387, 561, 612, 756, 857, 991
LmnI	GCTCC	8 cut(s)	209, 487, 633, 645, 914, 1066, 1077, 1228
Lsp1109I	GCAGC	6 cut(s)	457, 585, 684, 923, 1081, 1242
LweI	GCATC	2 cut(s)	147, 1176
MaeI	CTAG	4 cut(s)	92, 98, 1049, 1495
MaeII	ACGT	4 cut(s)	703, 871, 894, 1274
MaeIII	GTNAC	4 cut(s)	298, 635, 704, 1400
MalI	GATC	7 cut(s)	186, 389, 563, 614, 758, 859, 993
MboI	GATC	7 cut(s)	184, 387, 561, 612, 756, 857, 991
MboII	GAAGA	9 cut(s)	425, 538, 704, 808, 965, 1069, 1110, 1219, 1275
MfeI	CAATTG	1 cut(s)	568
MflI	RGATCY	4 cut(s)	184, 387, 857, 991
MhlI	GDGCHC	4 cut(s)	492, 1161, 1233, 1440
MlsI	TGGCCA	1 cut(s)	1001
MluCI	AATT	3 cut(s)	568, 769, 975
MluNI	TGGCCA	1 cut(s)	1001
MlyI	GAGTC	2 cut(s)	506, 583
MmeI	TCCRAC	5 cut(s)	51, 873, 952, 1044, 1050
Mox20I	TGGCCA	1 cut(s)	1001
MroI	TCCGGA	1 cut(s)	642
MroNI	GCCGGC	1 cut(s)	1007
MroXI	GAANNNNTTC	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	1001
MseI	TTAA	2 cut(s)	537, 1374
MslI	CAYNNNNRTG	1 cut(s)	326
Msp20I	TGGCCA	1 cut(s)	1001
MspA1I	CMGCKG	1 cut(s)	936
MspR9I	CCNGG	4 cut(s)	115, 146, 1441, 1466
MunI	CAATTG	1 cut(s)	568
MvaI	CCWGG	1 cut(s)	1441
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	669, 1013
NaeI	GCCGGC	1 cut(s)	1009
NciI	CCSGG	3 cut(s)	115, 146, 1466
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	7 cut(s)	184, 387, 561, 612, 756, 857, 991
NgoMIV	GCCGGC	1 cut(s)	1007
NlaIII	CATG	3 cut(s)	247, 466, 667
NlaIV	GGNNCC	6 cut(s)	62, 389, 832, 916, 1438, 1463
NmuCI	GTSAC	1 cut(s)	704
PaeR7I	CTCGAG	2 cut(s)	125, 392
PasI	CCCWGGG	1 cut(s)	1440
PceI	AGGCCT	1 cut(s)	929
PdiI	GCCGGC	1 cut(s)	1009
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	1210
PkrI	GCNGC	9 cut(s)	308, 472, 575, 674, 835, 938, 1071, 1257, 1423
PleI	GAGTC	2 cut(s)	506, 583
PmaCI	CACGTG	1 cut(s)	704
PmlI	CACGTG	1 cut(s)	704
PpsI	GAGTC	2 cut(s)	506, 583
Ppu21I	YACGTR	1 cut(s)	704
Psp124BI	GAGCTC	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	1439
PspCI	CACGTG	1 cut(s)	704
PspFI	CCCAGC	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	1439
PspN4I	GGNNCC	6 cut(s)	62, 389, 832, 916, 1438, 1463
PspOMI	GGGCCC	1 cut(s)	1436
PspXI	VCTCGAGB	1 cut(s)	392
PsuI	RGATCY	4 cut(s)	184, 387, 857, 991
RsaI	GTAC	8 cut(s)	62, 623, 751, 881, 1053, 1295, 1307, 1463
RsaNI	GTAC	8 cut(s)	61, 622, 750, 880, 1052, 1294, 1306, 1462
RseI	CAYNNNNRTG	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	492
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	537, 1374
SatI	GCNGC	9 cut(s)	307, 471, 574, 673, 834, 937, 1070, 1256, 1422
Sau3AI	GATC	7 cut(s)	184, 387, 561, 612, 756, 857, 991
ScaI	AGTACT	1 cut(s)	1053
SchI	GAGTC	2 cut(s)	506, 583
ScrFI	CCNGG	4 cut(s)	115, 146, 1441, 1466
SduI	GDGCHC	4 cut(s)	492, 1161, 1233, 1440
SfaNI	GCATC	2 cut(s)	147, 1176
SfcI	CTRYAG	1 cut(s)	1214
Sfr274I	CTCGAG	2 cut(s)	125, 392
SinI	GGWCC	4 cut(s)	168, 889, 1043, 1407
SlaI	CTCGAG	2 cut(s)	125, 392
SmiMI	CAYNNNNRTG	1 cut(s)	326
SmlI	CTYRAG	3 cut(s)	41, 125, 392
SmoI	CTYRAG	3 cut(s)	41, 125, 392
Sse9I	AATT	3 cut(s)	568, 769, 975
SseBI	AGGCCT	1 cut(s)	929
SsiI	CCGC	8 cut(s)	307, 340, 485, 737, 834, 934, 1226, 1421
SspMI	CTAG	4 cut(s)	92, 98, 1049, 1495
SstI	GAGCTC	1 cut(s)	492
StuI	AGGCCT	1 cut(s)	929
StyD4I	CCNGG	4 cut(s)	113, 144, 1439, 1464
StyI	CCWWGG	3 cut(s)	462, 778, 1317
TaaI	ACNGT	3 cut(s)	235, 854, 1218
TaiI	ACGT	4 cut(s)	706, 874, 897, 1277
TaqII	GACCGA	1 cut(s)	1031
TasI	AATT	3 cut(s)	568, 769, 975
TatI	WGTACW	3 cut(s)	621, 879, 1051
TauI	GCSGC	3 cut(s)	309, 836, 1424
TfiI	GAWTC	1 cut(s)	1210
Tru1I	TTAA	2 cut(s)	537, 1374
Tru9I	TTAA	2 cut(s)	537, 1374
TscAI	CASTG	2 cut(s)	238, 1238
TseFI	GTSAC	1 cut(s)	704
TseI	GCWGC	6 cut(s)	470, 573, 672, 936, 1069, 1255
Tsp45I	GTSAC	1 cut(s)	704
TspDTI	ATGAA	4 cut(s)	214, 232, 710, 1460
TspGWI	ACGGA	3 cut(s)	22, 767, 809
TspRI	CASTG	2 cut(s)	238, 1238
VpaK11BI	GGWCC	4 cut(s)	168, 889, 1043, 1407
XagI	CCTNNNNNAGG	1 cut(s)	713
XapI	RAATTY	1 cut(s)	975
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883
XhoI	CTCGAG	2 cut(s)	125, 392
XmiI	GTMKAC	2 cut(s)	237, 273
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	4 cut(s)	92, 98, 1049, 1495
ZrmI	AGTACT	1 cut(s)	1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.