MD13G1056400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0017658
Physical Location & Seq
Reverse (-)
3932697 .. 3934258
1562 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1056400.v1.1.491

Sequence Viewer

Length: 435 bp
ATGGAGATGGCATTCTTCACTTTTCTTTGCATTCTATTTCTCTCCACTTTGCTAATTACACCCAGCTGTGCTTCTCTGCAAACTCAACTTCTACCATCGAACAAACAAGCTGCAGCCAAGAACGAACTGCAAGTTTCTCTCCCTACACTGCCAAGAAAACTTAGGTTCACTGTTAAAGTAACTGTTGCAGAACAAGAAGGTAAAGATTACTCAGCCTACAGCAACCATAAGGAAAATGCTTTAGCAGGTGGTAAGAAGCCAAGAACCCAGAAAGAAGAAGATGAAAAAGTGCAGGTAGTGGAAAGAAGCAGATCAGCAGAAACAAGGCAGGAACGGATGGAGAAGGAGGACACGCCAGAGTTCTTCACAATGGATTATCAGAGTGTAAGACGACGAAGTCCCATACACAACTCCTTCCCTGCAGTTTCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.43

Weight (kDa)

8.93

Isoelectric Point (pI)

69.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 92 - 137 7.6e-07 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017658)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g29280
malus_domestica MD13G1056400.v1.1 MD16G1055300.v1.1
prunus_persica Prupe.1G293600_v2.0.a1
rosa_laevigata RLG00000006445
rosa_roxburghii Rroxscaffold_5G00378480
rosa_rugosa Rorug04G0299500
rosa_samantha Rh4AG354800 Rh4BG364700 Rh4CG378800 Rh4DG358500
rosa_wichuraiana Rw4G031100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
AasI GACNNNNNNGTC 1 cut(s) 396
Acc36I ACCTGC 2 cut(s) 236, 283
AluBI AGCT 2 cut(s) 66, 110
AluI AGCT 2 cut(s) 66, 110
ApeKI GCWGC 2 cut(s) 110, 113
BbvI GCAGC 2 cut(s) 97, 125
BccI CCATC 2 cut(s) 103, 331
BfmI CTRYAG 3 cut(s) 111, 217, 420
BfuAI ACCTGC 2 cut(s) 236, 283
BisI GCNGC 2 cut(s) 111, 114
BlsI GCNGC 2 cut(s) 112, 115
BseGI GGATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 225
BseXI GCAGC 2 cut(s) 97, 125
BseYI CCCAGC 1 cut(s) 62
BsgI GTGCAG 1 cut(s) 311
BslFI GGGAC 1 cut(s) 384
BsmFI GGGAC 1 cut(s) 384
BsmI GAATGC 2 cut(s) 11, 30
Bsp143I GATC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 224
BspMAI CTGCAG 2 cut(s) 115, 424
BspMI ACCTGC 2 cut(s) 236, 283
BssMI GATC 1 cut(s) 311
Bst4CI ACNGT 2 cut(s) 172, 184
BstDEI CTNAG 2 cut(s) 161, 211
BstF5I GGATG 1 cut(s) 342
BstKTI GATC 1 cut(s) 314
BstMBI GATC 1 cut(s) 311
BstSFI CTRYAG 3 cut(s) 111, 217, 420
BstV1I GCAGC 2 cut(s) 97, 125
BtsCI GGATG 1 cut(s) 342
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 2 cut(s) 146, 168
BveI ACCTGC 2 cut(s) 236, 283
CviAII CATG 1 cut(s) 432
CviJI RGCY 5 cut(s) 66, 110, 116, 215, 259
CviKI_1 RGCY 5 cut(s) 66, 110, 116, 215, 259
DdeI CTNAG 2 cut(s) 161, 211
DpnI GATC 1 cut(s) 313
DpnII GATC 1 cut(s) 311
DrdI GACNNNNNNGTC 1 cut(s) 396
DseDI GACNNNNNNGTC 1 cut(s) 396
FaeI CATG 1 cut(s) 435
FaiI YATR 3 cut(s) 228, 404, 433
FaqI GGGAC 1 cut(s) 384
FatI CATG 1 cut(s) 431
Fnu4HI GCNGC 2 cut(s) 111, 114
FokI GGATG 1 cut(s) 349
Fsp4HI GCNGC 2 cut(s) 111, 114
GluI GCNGC 2 cut(s) 111, 114
GsaI CCCAGC 1 cut(s) 66
Hin1II CATG 1 cut(s) 435
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 381
Hpy8I GTNNAC 1 cut(s) 168
Hpy99I CGWCG 1 cut(s) 396
HpyAV CCTTC 3 cut(s) 191, 337, 424
HpyCH4III ACNGT 2 cut(s) 172, 184
HpyCH4V TGCA 7 cut(s) 30, 79, 113, 130, 188, 292, 422
HpyF3I CTNAG 2 cut(s) 161, 211
Hsp92II CATG 1 cut(s) 435
Kzo9I GATC 1 cut(s) 311
LpnPI CCDG 6 cut(s) 76, 231, 278, 281, 314, 369
Lsp1109I GCAGC 2 cut(s) 97, 125
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 313
MboI GATC 1 cut(s) 311
MboII GAAGA 4 cut(s) 7, 287, 290, 355
MluCI AATT 1 cut(s) 54
MnlI CCTC 1 cut(s) 340
MseI TTAA 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 66
Mva1269I GAATGC 2 cut(s) 11, 30
NdeII GATC 1 cut(s) 311
NlaIII CATG 1 cut(s) 435
PaqCI CACCTGC 1 cut(s) 236
PctI GAATGC 2 cut(s) 11, 30
PflFI GACNNNGTC 1 cut(s) 396
PkrI GCNGC 2 cut(s) 112, 115
PspFI CCCAGC 1 cut(s) 62
PstI CTGCAG 2 cut(s) 115, 424
PsyI GACNNNGTC 1 cut(s) 396
PvuII CAGCTG 1 cut(s) 66
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 2 cut(s) 111, 114
Sau3AI GATC 1 cut(s) 311
SetI ASST 6 cut(s) 68, 112, 167, 202, 250, 297
SfcI CTRYAG 3 cut(s) 111, 217, 420
Sse9I AATT 1 cut(s) 54
TaaI ACNGT 2 cut(s) 172, 184
TaqI TCGA 1 cut(s) 98
TasI AATT 1 cut(s) 54
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 2 cut(s) 153, 175
TseI GCWGC 2 cut(s) 110, 113
TspDTI ATGAA 1 cut(s) 297
TspGWI ACGGA 1 cut(s) 349
TspRI CASTG 2 cut(s) 153, 175
Tth111I GACNNNGTC 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.