Rh4DG358500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017658
Physical Location & Seq
Reverse (-)
57922181 .. 57923641
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG358500.1

Sequence Viewer

Length: 483 bp
ATGGAGCTGGTATTCTTCACCAGTGTCACTATGCTATGCATTCTTCTCTCTACTTTGCTAACACCTTGTGCTTATTCTCTGCAAATTCAAGTGCAGCCATGGAGTAAAGTAGCTGCCAAGAAAGAAGTTCAAGTCTCTCAGCTCCATGCATTGCCATGGCCAAGAAAGCTTCAACTCATTGAAATAGAAGCTACTGTTGTAGGACAAGAAGGCCAAGATTCAGCACCTAATCACAAAAAGCAGCCGAAGCAAAATGTTCTAGCGGCAGGTACTAAGCCATTGATCCATAAAGAAGAAGAAGAAGGTGTAGAGGTGAAGCACAGAAGCAGTTCAGGGACGTGGCAGGAATGGATGGAGAGCGACGACGAGGAGAAATCGGCGTTCTTCACAATGGATTATTCCAAAGTCAGAAGACGACGCCCGATACACAACAAGTCCTTGAAGCCAAAGGGCGTTAAAGTTGCAGCAGCAGCAACTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.03

Weight (kDa)

9.08

Isoelectric Point (pI)

60.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017658)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g29280
malus_domestica MD13G1056400.v1.1 MD16G1055300.v1.1
prunus_persica Prupe.1G293600_v2.0.a1
rosa_laevigata RLG00000006445
rosa_roxburghii Rroxscaffold_5G00378480
rosa_rugosa Rorug04G0299500
rosa_samantha Rh4AG354800 Rh4BG364700 Rh4CG378800 Rh4DG358500
rosa_wichuraiana Rw4G031100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 257
AciI CCGC 1 cut(s) 263
AclWI GGATC 1 cut(s) 277
AcoI YGGCCR 1 cut(s) 158
AcsI RAATTY 1 cut(s) 84
AcyI GRCGYC 1 cut(s) 418
AdeI CACNNNGTG 1 cut(s) 68
AfaI GTAC 1 cut(s) 271
AgsI TTSAA 5 cut(s) 89, 131, 173, 182, 442
AjiI CACGTC 1 cut(s) 339
AluBI AGCT 5 cut(s) 7, 113, 142, 169, 191
AluI AGCT 5 cut(s) 7, 113, 142, 169, 191
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 1 cut(s) 277
AoxI GGCC 2 cut(s) 158, 211
ApeKI GCWGC 6 cut(s) 94, 113, 241, 464, 467, 470
ApoI RAATTY 1 cut(s) 84
Asp700I GAANNNNTTC 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 10, 325
BalI TGGCCA 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 418
BbvI GCAGC 5 cut(s) 100, 106, 253, 476, 479
BccI CCATC 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 257
BisI GCNGC 7 cut(s) 95, 114, 242, 264, 465, 468, 471
BlsI GCNGC 7 cut(s) 96, 115, 243, 265, 466, 469, 472
BmgBI CACGTC 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 418
BsaJI CCNNGG 2 cut(s) 98, 155
Bse1I ACTGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 98, 155
BseGI GGATG 1 cut(s) 357
BseMI GCAATG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 383
BseXI GCAGC 5 cut(s) 100, 106, 253, 476, 479
BsgI GTGCAG 1 cut(s) 113
BshFI GGCC 2 cut(s) 160, 213
BslFI GGGAC 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 349
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 2 cut(s) 160, 213
Bsp143I GATC 1 cut(s) 282
Bsp19I CCATGG 2 cut(s) 98, 155
BspACI CCGC 1 cut(s) 263
BspANI GGCC 2 cut(s) 160, 213
BspCNI CTCAG 1 cut(s) 151
BspMI ACCTGC 1 cut(s) 257
BspPI GGATC 1 cut(s) 277
BsrDI GCAATG 1 cut(s) 149
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 98, 155
BssMI GATC 1 cut(s) 282
BssNI GRCGYC 1 cut(s) 418
BssT1I CCWWGG 2 cut(s) 98, 155
Bst4CI ACNGT 1 cut(s) 196
BstACI GRCGYC 1 cut(s) 418
BstDEI CTNAG 2 cut(s) 138, 273
BstDSI CCRYGG 2 cut(s) 98, 155
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 1 cut(s) 285
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 1 cut(s) 282
BstMWI GCNNNNNNNGC 3 cut(s) 166, 247, 470
BstV1I GCAGC 5 cut(s) 100, 106, 253, 476, 479
BstV2I GAAGAC 1 cut(s) 418
BsuRI GGCC 2 cut(s) 160, 213
BtgI CCRYGG 2 cut(s) 98, 155
BtrI CACGTC 1 cut(s) 339
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 28
BveI ACCTGC 1 cut(s) 257
CseI GACGC 1 cut(s) 426
Csp6I GTAC 1 cut(s) 270
CviAII CATG 4 cut(s) 99, 146, 156, 480
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 2 cut(s) 138, 273
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
DraIII CACNNNGTG 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 158
Eco130I CCWWGG 2 cut(s) 98, 155
EcoT14I CCWWGG 2 cut(s) 98, 155
EcoT22I ATGCAT 2 cut(s) 41, 151
ErhI CCWWGG 2 cut(s) 98, 155
FaeI CATG 4 cut(s) 102, 149, 159, 483
FaiI YATR 7 cut(s) 32, 37, 100, 147, 157, 288, 481
FaqI GGGAC 1 cut(s) 349
FatI CATG 4 cut(s) 98, 145, 155, 479
Fnu4HI GCNGC 7 cut(s) 95, 114, 242, 264, 465, 468, 471
FokI GGATG 1 cut(s) 364
Fsp4HI GCNGC 7 cut(s) 95, 114, 242, 264, 465, 468, 471
FspBI CTAG 1 cut(s) 260
GluI GCNGC 7 cut(s) 95, 114, 242, 264, 465, 468, 471
HaeIII GGCC 2 cut(s) 160, 213
HgaI GACGC 1 cut(s) 426
Hin1I GRCGYC 1 cut(s) 418
Hin1II CATG 4 cut(s) 102, 149, 159, 483
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 1 cut(s) 218
HphI GGTGA 2 cut(s) 10, 325
Hpy188I TCNGA 1 cut(s) 410
Hpy99I CGWCG 3 cut(s) 365, 368, 420
HpyAV CCTTC 2 cut(s) 203, 296
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 5 cut(s) 39, 82, 94, 149, 464
HpyF10VI GCNNNNNNNGC 3 cut(s) 166, 247, 470
HpyF3I CTNAG 2 cut(s) 138, 273
HpySE526I ACGT 1 cut(s) 338
Hsp92I GRCGYC 1 cut(s) 418
Hsp92II CATG 4 cut(s) 102, 149, 159, 483
Kzo9I GATC 1 cut(s) 282
LmnI GCTCC 2 cut(s) 4, 147
LpnPI CCDG 4 cut(s) 34, 252, 318, 329
Lsp1109I GCAGC 5 cut(s) 100, 106, 253, 476, 479
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 338
MaeIII GTNAC 1 cut(s) 25
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 7 cut(s) 7, 35, 305, 308, 311, 376, 423
MlsI TGGCCA 1 cut(s) 160
MluCI AATT 1 cut(s) 84
MluNI TGGCCA 1 cut(s) 160
MnlI CCTC 2 cut(s) 304, 361
Mox20I TGGCCA 1 cut(s) 160
Mph1103I ATGCAT 2 cut(s) 41, 151
MroXI GAANNNNTTC 1 cut(s) 328
MscI TGGCCA 1 cut(s) 160
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 1 cut(s) 154
Msp20I TGGCCA 1 cut(s) 160
Mva1269I GAATGC 1 cut(s) 39
MwoI GCNNNNNNNGC 3 cut(s) 166, 247, 470
NcoI CCATGG 2 cut(s) 98, 155
NdeII GATC 1 cut(s) 282
NlaIII CATG 4 cut(s) 102, 149, 159, 483
NmuCI GTSAC 1 cut(s) 25
NsiI ATGCAT 2 cut(s) 41, 151
PctI GAATGC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 328
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 7 cut(s) 96, 115, 243, 265, 466, 469, 472
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
RseI CAYNNNNRTG 1 cut(s) 154
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 7 cut(s) 95, 114, 242, 264, 465, 468, 471
Sau3AI GATC 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 154
Sse9I AATT 1 cut(s) 84
SsiI CCGC 1 cut(s) 263
SspMI CTAG 1 cut(s) 260
StyI CCWWGG 2 cut(s) 98, 155
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 341
TasI AATT 1 cut(s) 84
TauI GCSGC 1 cut(s) 266
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 6 cut(s) 94, 113, 241, 464, 467, 470
Tsp45I GTSAC 1 cut(s) 25
TspRI CASTG 1 cut(s) 28
XapI RAATTY 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 328
XspI CTAG 1 cut(s) 260
Zsp2I ATGCAT 2 cut(s) 41, 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.