MD16G1055300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0017658
Physical Location & Seq
Reverse (-)
3895172 .. 3896624
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1055300.v1.1.491

Sequence Viewer

Length: 438 bp
ATGGAGATTCCATTCTTCACGTTGCTTTGCTTTCTAATCCTCTCCGTTTTGCTAATTACACCCGGATGTGCTTCTCTGCAAACTCAACTTCAACCATCCAACAAACAAGGCAAGAACGAACTGCAGGTTTCTTTCCCTACACTGCCAAGGAAGCTTAGATTGACTGGAAAAGTAACTGTTGCAGAACAAGAAGGTAAAAATTCCTCAGCCTACAACAACCACAAGGAAAGTGCTTTAGCAGATGGTAAGAAGCCAAGAATCGAGAAAGAAGAAGATGAAGAAGTGCAGGTAGTGGAAAGAAGCAGATCAGTAGACACATGGCAGGAACAGATGGAGAAGGAGGACACGTCAGAGTTCTTCACCATGGATTATCACAGAGTAAGACGACGACGTCCCATACACAACAAGTCCTTTCCTGCAGTTACAGTTTCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.66

Weight (kDa)

7.79

Isoelectric Point (pI)

69.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 89 - 135 6.5e-07 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017658)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g29280
malus_domestica MD13G1056400.v1.1 MD16G1055300.v1.1
prunus_persica Prupe.1G293600_v2.0.a1
rosa_laevigata RLG00000006445
rosa_roxburghii Rroxscaffold_5G00378480
rosa_rugosa Rorug04G0299500
rosa_samantha Rh4AG354800 Rh4BG364700 Rh4CG378800 Rh4DG358500
rosa_wichuraiana Rw4G031100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 390
AatII GACGTC 1 cut(s) 394
Acc36I ACCTGC 2 cut(s) 115, 277
AccI GTMKAC 1 cut(s) 312
AcsI RAATTY 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 391
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 1 cut(s) 92
AjiI CACGTC 1 cut(s) 348
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
ApoI RAATTY 1 cut(s) 199
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 352
BbvCI CCTCAGC 1 cut(s) 205
BccI CCATC 3 cut(s) 103, 236, 325
BcnI CCSGG 1 cut(s) 63
BfmI CTRYAG 2 cut(s) 122, 417
BfuAI ACCTGC 2 cut(s) 115, 277
Bme1390I CCNGG 1 cut(s) 63
BmgBI CACGTC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 391
BsaJI CCNNGG 2 cut(s) 146, 363
BsaXI ACNNNNNCTCC 3 cut(s) 332, 362, 415
Bse1I ACTGG 1 cut(s) 169
BseDI CCNNGG 2 cut(s) 146, 363
BseGI GGATG 2 cut(s) 71, 95
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 305
BsiSI CCGG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 378
Bsp143I GATC 1 cut(s) 305
Bsp19I CCATGG 1 cut(s) 363
BspCNI CTCAG 1 cut(s) 218
BspMAI CTGCAG 2 cut(s) 126, 421
BspMI ACCTGC 2 cut(s) 115, 277
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 146, 363
BssMI GATC 1 cut(s) 305
BssNI GRCGYC 1 cut(s) 391
BssT1I CCWWGG 2 cut(s) 146, 363
Bst4CI ACNGT 2 cut(s) 178, 427
BstACI GRCGYC 1 cut(s) 391
BstDEI CTNAG 2 cut(s) 155, 205
BstDSI CCRYGG 1 cut(s) 363
BstF5I GGATG 2 cut(s) 71, 95
BstKTI GATC 1 cut(s) 308
BstMBI GATC 1 cut(s) 305
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 61
BstSFI CTRYAG 2 cut(s) 122, 417
BtgI CCRYGG 1 cut(s) 363
BtrI CACGTC 1 cut(s) 348
BtsCI GGATG 2 cut(s) 71, 95
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 140
BveI ACCTGC 2 cut(s) 115, 277
CviAII CATG 3 cut(s) 318, 364, 435
CviJI RGCY 3 cut(s) 154, 209, 253
CviKI_1 RGCY 3 cut(s) 154, 209, 253
DdeI CTNAG 2 cut(s) 155, 205
DpnI GATC 1 cut(s) 307
DpnII GATC 1 cut(s) 305
DrdI GACNNNNNNGTC 1 cut(s) 390
DseDI GACNNNNNNGTC 1 cut(s) 390
Eco130I CCWWGG 2 cut(s) 146, 363
EcoT14I CCWWGG 2 cut(s) 146, 363
ErhI CCWWGG 2 cut(s) 146, 363
FaeI CATG 3 cut(s) 321, 367, 438
FaiI YATR 4 cut(s) 319, 365, 398, 436
FaqI GGGAC 1 cut(s) 378
FatI CATG 3 cut(s) 317, 363, 434
FblI GTMKAC 1 cut(s) 312
FokI GGATG 2 cut(s) 78, 82
HapII CCGG 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 391
Hin1II CATG 3 cut(s) 321, 367, 438
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 2 cut(s) 7, 258
HpaII CCGG 1 cut(s) 63
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 1 cut(s) 262
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 2 cut(s) 390, 393
HpyAV CCTTC 2 cut(s) 185, 331
HpyCH4III ACNGT 2 cut(s) 178, 427
HpyCH4IV ACGT 3 cut(s) 20, 347, 391
HpyCH4V TGCA 5 cut(s) 79, 124, 182, 286, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 2 cut(s) 155, 205
HpySE526I ACGT 3 cut(s) 20, 347, 391
Hsp92I GRCGYC 1 cut(s) 391
Hsp92II CATG 3 cut(s) 321, 367, 438
Kzo9I GATC 1 cut(s) 305
LpnPI CCDG 6 cut(s) 76, 110, 150, 272, 308, 429
MaeII ACGT 3 cut(s) 20, 347, 391
MaeIII GTNAC 2 cut(s) 172, 421
MalI GATC 1 cut(s) 307
MboI GATC 1 cut(s) 305
MboII GAAGA 5 cut(s) 7, 281, 284, 290, 349
MluCI AATT 2 cut(s) 54, 199
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 3 cut(s) 50, 214, 334
MslI CAYNNNNRTG 1 cut(s) 64
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 151
NciI CCSGG 1 cut(s) 63
NcoI CCATGG 1 cut(s) 363
NdeII GATC 1 cut(s) 305
NlaIII CATG 3 cut(s) 321, 367, 438
PfeI GAWTC 2 cut(s) 7, 258
PflFI GACNNNGTC 1 cut(s) 390
PstI CTGCAG 2 cut(s) 126, 421
PsyI GACNNNGTC 1 cut(s) 390
RseI CAYNNNNRTG 1 cut(s) 64
Sau3AI GATC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 63
SetI ASST 7 cut(s) 23, 129, 156, 196, 291, 350, 394
SfcI CTRYAG 2 cut(s) 122, 417
SmiMI CAYNNNNRTG 1 cut(s) 64
Sse9I AATT 2 cut(s) 54, 199
StyD4I CCNGG 1 cut(s) 61
StyI CCWWGG 2 cut(s) 146, 363
TaaI ACNGT 2 cut(s) 178, 427
TaiI ACGT 3 cut(s) 23, 350, 394
TaqI TCGA 1 cut(s) 261
TasI AATT 2 cut(s) 54, 199
TfiI GAWTC 2 cut(s) 7, 258
TscAI CASTG 1 cut(s) 147
TspDTI ATGAA 1 cut(s) 291
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 1 cut(s) 147
Tth111I GACNNNGTC 1 cut(s) 390
XapI RAATTY 1 cut(s) 199
XmiI GTMKAC 1 cut(s) 312
ZraI GACGTC 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.