Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005568

Physical Location & Seq

Genomic Coordinates Reverse (-)

47416438 .. 47424702

Gene Structure 8265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0299500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCCAACCTTAACTTGGAAAAAGATGTTTCAGGGGTTTTGAGATCATTTTCAGATTCACCGCCAACTCATTATTCTGTAGAAATACAGTTTTTTTCATTGCTTAGTGAAAAATATTCAGAGAATGGATATGAATCAAAGGAGTTTAAAGCTGGAGGATACAAATGGAAACTGGTGTTTCACCCAAATGGAAACAAAAAGAGGAATGTAAAAGACCACGTCTCCCTCTACTTGGTGATAGCTGGAGCAGATTCACTGGATAGTAGTTGGGAAGTATATGTTGATTTCAGATTGTTTCTGCTCGATCAGAATAACGGAAACTACTTGGTTTTTGAAGATGCTTTCACAAAGAAGAAATGCTTTCATGGGGTGATGCGTAGTGTGGGTTTCGATAAACTTATCCCTCTTGAAGATTTTACTGATGTTTCCAATGGATTTCTAGTGGACGACACATGTGTGTTTGGAGCCGAGGTCTTTGTTTGTAAAGAAAGAAGAACAGGCAAGGGCGAGTGCCTAGCAAGGATGAAGATAGCCTCTGTATGCAAACATGTTTGGAAGGTTGAGAAATTTTCATCTTTAGGTGCTCAATTTGACTCTGAACCGTTCACTGCTGGGGACTATAATTGGAAGATAAAGCTGTATCCTGATGGATGTGGGGAAGGCAAGGGTAGTCATCTTTCTCTGTTTTTGGAATTGGCTAGTCCCATAACCCTCCCCCCTGACTCAGAACTATTTGTGGAGTATAGATTTCGCATCCTAGACCAAATTCGTCATCAGCATCATGATCTTTCTAGTGGTAAGGCCTTGTTCCGTGACAGTACAAGTTTGGGTTCGCGTAGATTCATTGGACAAGAATCTTTCAGGCAGGTAGAAAATGGGTTTTTGAAGAATGATGTTTGCATGGTAGAAGCAGAGGTGACCGTCCATGGAATTTCTAAAGTACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

315

Amino Acids

35.73

Weight (kDa)

6.22

Isoelectric Point (pI)

29.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	24 - 158	1.7e-33	MATH domain
MATH	PF00917	40 - 160	5.1e-11	MATH domain
MATH_2	PF22486	182 - 306	4.2e-30	MATH domain
MATH	PF00917	189 - 308	1.7e-07	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64400 AT4G11030 AT4G23850
fragaria_vesca	FvH4_5g04520 FvH4_5g04520 FvH4_5g04520
malus_domestica	MD02G1279200.v1.1 MD06G1106100.v1.1 MD14G1128200.v1.1
prunus_persica	Prupe.5G118400_v2.0.a1 Prupe.5G118400_v2.0.a1
pyrus_communis	pycom06g10040
rosa_chinensis	RchiOBHm_Chr7g0179891 RchiOBHm_Chr7g0194931
rosa_laevigata	RLG00000004156
rosa_multiflora	Rmu_sc0008218.1_g000002 Rmu_sc0010214.1_g000001 Rmu_ssc0000157.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260880
rosa_rugosa	Rorug04G0299500 Rorug07G0019100 Rorug07G0019200
rosa_samantha	Rh1DG084200 Rh7AG146900 Rh7BG147600 Rh7CG151000 Rh7DG148100
rosa_wichuraiana	Rw7G012540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	856
AccII	CGCG	1 cut(s)	835
AciI	CCGC	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	566, 765, 930
AfaI	GTAC	2 cut(s)	820, 942
AfiI	CCNNNNNNNGG	2 cut(s)	16, 232
AflIII	ACRYGT	2 cut(s)	452, 547
AgsI	TTSAA	3 cut(s)	335, 410, 886
AjiI	CACGTC	1 cut(s)	220
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AleI	CACNNNNGTG	1 cut(s)	455
AluBI	AGCT	3 cut(s)	152, 242, 637
AluI	AGCT	3 cut(s)	152, 242, 637
Alw21I	GWGCWC	1 cut(s)	586
Alw26I	GTCTC	1 cut(s)	226
AoxI	GGCC	2 cut(s)	3, 801
ApoI	RAATTY	3 cut(s)	566, 765, 930
AsuHPI	GGTGA	5 cut(s)	51, 173, 247, 382, 928
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	586
BccI	CCATC	1 cut(s)	641
BciVI	GTATCC	2 cut(s)	152, 651
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	5 cut(s)	440, 515, 699, 758, 792
BfmI	CTRYAG	2 cut(s)	78, 944
BfuAI	ACCTGC	1 cut(s)	856
BfuI	GTATCC	2 cut(s)	152, 651
BmcAI	AGTACT	1 cut(s)	942
BmgBI	CACGTC	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	466
BmsI	GCATC	4 cut(s)	328, 363, 762, 787
BpmI	CTGGAG	2 cut(s)	174, 264
BsaBI	GATNNNNATC	1 cut(s)	133
BsaJI	CCNNGG	2 cut(s)	468, 925
BsaXI	ACNNNNNCTCC	4 cut(s)	206, 236, 456, 486
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 232
Bse1I	ACTGG	2 cut(s)	177, 261
Bse3DI	GCAATG	1 cut(s)	98
Bse8I	GATNNNNATC	1 cut(s)	133
BseDI	CCNNGG	2 cut(s)	468, 925
BseGI	GGATG	3 cut(s)	528, 656, 753
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	2 cut(s)	16, 232
BseMI	GCAATG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	738
BseNI	ACTGG	2 cut(s)	177, 261
BseYI	CCCAGC	1 cut(s)	611
Bsh1236I	CGCG	1 cut(s)	835
BshFI	GGCC	2 cut(s)	5, 803
BsiHKAI	GWGCWC	1 cut(s)	586
BslFI	GGGAC	2 cut(s)	629, 687
BslI	CCNNNNNNNGG	2 cut(s)	16, 232
BsmAI	GTCTC	1 cut(s)	226
BsmBI	CGTCTC	1 cut(s)	226
BsmFI	GGGAC	2 cut(s)	629, 687
BsnI	GGCC	2 cut(s)	5, 803
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp143I	GATC	3 cut(s)	44, 304, 784
Bsp19I	CCATGG	1 cut(s)	925
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	2 cut(s)	5, 803
BspCNI	CTCAG	1 cut(s)	737
BspFNI	CGCG	1 cut(s)	835
BspHI	TCATGA	1 cut(s)	781
BspLI	GGNNCC	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	856
BsrDI	GCAATG	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	177, 261
BssECI	CCNNGG	2 cut(s)	468, 925
BssMI	GATC	3 cut(s)	44, 304, 784
BssT1I	CCWWGG	1 cut(s)	925
Bst4CI	ACNGT	5 cut(s)	90, 603, 818, 922, 945
BstDEI	CTNAG	2 cut(s)	104, 724
BstDSI	CCRYGG	1 cut(s)	925
BstEII	GGTNACC	1 cut(s)	916
BstF5I	GGATG	3 cut(s)	528, 656, 753
BstFNI	CGCG	1 cut(s)	835
BstKTI	GATC	3 cut(s)	47, 307, 787
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	3 cut(s)	44, 304, 784
BstNSI	RCATGY	2 cut(s)	456, 551
BstPI	GGTNACC	1 cut(s)	916
BstSFI	CTRYAG	2 cut(s)	78, 944
BstUI	CGCG	1 cut(s)	835
BsuI	GTATCC	2 cut(s)	152, 651
BsuRI	GGCC	2 cut(s)	5, 803
BtgI	CCRYGG	1 cut(s)	925
BtrI	CACGTC	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	528, 656, 753
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	2 cut(s)	254, 606
BveI	ACCTGC	1 cut(s)	856
CciI	TCATGA	1 cut(s)	781
Csp6I	GTAC	2 cut(s)	819, 941
CviAII	CATG	6 cut(s)	365, 453, 548, 782, 901, 926
CviJI	RGCY	8 cut(s)	5, 152, 242, 467, 533, 637, 698, 803
CviKI_1	RGCY	8 cut(s)	5, 152, 242, 467, 533, 637, 698, 803
CviQI	GTAC	2 cut(s)	819, 941
DdeI	CTNAG	2 cut(s)	104, 724
DpnI	GATC	3 cut(s)	46, 306, 786
DpnII	GATC	3 cut(s)	44, 304, 784
DraI	TTTAAA	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	925
Eco147I	AGGCCT	1 cut(s)	803
Eco91I	GGTNACC	1 cut(s)	916
EcoO65I	GGTNACC	1 cut(s)	916
EcoT14I	CCWWGG	1 cut(s)	925
ErhI	CCWWGG	1 cut(s)	925
Esp3I	CGTCTC	1 cut(s)	226
FaeI	CATG	6 cut(s)	368, 456, 551, 785, 904, 929
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FaqI	GGGAC	2 cut(s)	629, 687
FatI	CATG	6 cut(s)	364, 452, 547, 781, 900, 925
FokI	GGATG	3 cut(s)	535, 663, 740
FspBI	CTAG	5 cut(s)	440, 515, 699, 758, 792
GsaI	CCCAGC	1 cut(s)	615
GsuI	CTGGAG	2 cut(s)	174, 264
HaeIII	GGCC	2 cut(s)	5, 803
Hin1II	CATG	6 cut(s)	368, 456, 551, 785, 904, 929
HinfI	GANTC	7 cut(s)	56, 134, 251, 593, 722, 840, 854
HphI	GGTGA	5 cut(s)	51, 173, 247, 382, 928
Hpy166II	GTNNAC	2 cut(s)	445, 606
Hpy188I	TCNGA	6 cut(s)	55, 121, 290, 309, 598, 727
Hpy188III	TCNNGA	3 cut(s)	407, 644, 782
Hpy8I	GTNNAC	2 cut(s)	445, 606
HpyAV	CCTTC	2 cut(s)	550, 653
HpyCH4III	ACNGT	5 cut(s)	90, 603, 818, 922, 945
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	2 cut(s)	543, 900
HpyF3I	CTNAG	2 cut(s)	104, 724
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	6 cut(s)	368, 456, 551, 785, 904, 929
Kzo9I	GATC	3 cut(s)	44, 304, 784
LmnI	GCTCC	2 cut(s)	245, 464
LweI	GCATC	4 cut(s)	328, 363, 762, 787
MaeI	CTAG	5 cut(s)	440, 515, 699, 758, 792
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	812, 916
MalI	GATC	3 cut(s)	46, 306, 786
MboI	GATC	3 cut(s)	44, 304, 784
MboII	GAAGA	7 cut(s)	347, 364, 422, 504, 538, 640, 898
MhlI	GDGCHC	1 cut(s)	586
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	566, 587, 622, 692, 765, 930
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	587, 716
MnlI	CCTC	8 cut(s)	149, 195, 236, 414, 463, 544, 722, 907
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	12, 147
MslI	CAYNNNNRTG	2 cut(s)	186, 455
Msp20I	TGGCCA	1 cut(s)	5
MvnI	CGCG	1 cut(s)	835
NcoI	CCATGG	1 cut(s)	925
NdeII	GATC	3 cut(s)	44, 304, 784
NlaIII	CATG	6 cut(s)	368, 456, 551, 785, 904, 929
NlaIV	GGNNCC	1 cut(s)	466
NmeAIII	GCCGAG	1 cut(s)	493
NmuCI	GTSAC	2 cut(s)	812, 916
NspI	RCATGY	2 cut(s)	456, 551
OliI	CACNNNNGTG	1 cut(s)	455
PagI	TCATGA	1 cut(s)	781
PceI	AGGCCT	1 cut(s)	803
PciI	ACATGT	2 cut(s)	452, 547
PfeI	GAWTC	5 cut(s)	56, 134, 251, 840, 854
PflFI	GACNNNGTC	1 cut(s)	218
PleI	GAGTC	2 cut(s)	587, 716
PpsI	GAGTC	2 cut(s)	587, 716
PscI	ACATGT	2 cut(s)	452, 547
PspEI	GGTNACC	1 cut(s)	916
PspFI	CCCAGC	1 cut(s)	611
PspN4I	GGNNCC	1 cut(s)	466
PsyI	GACNNNGTC	1 cut(s)	218
RsaI	GTAC	2 cut(s)	820, 942
RsaNI	GTAC	2 cut(s)	819, 941
RseI	CAYNNNNRTG	2 cut(s)	186, 455
SaqAI	TTAA	2 cut(s)	12, 147
Sau3AI	GATC	3 cut(s)	44, 304, 784
ScaI	AGTACT	1 cut(s)	942
SchI	GAGTC	2 cut(s)	587, 716
SduI	GDGCHC	1 cut(s)	586
SfaNI	GCATC	4 cut(s)	328, 363, 762, 787
SfcI	CTRYAG	2 cut(s)	78, 944
SmiMI	CAYNNNNRTG	2 cut(s)	186, 455
Sse9I	AATT	6 cut(s)	566, 587, 622, 692, 765, 930
SseBI	AGGCCT	1 cut(s)	803
SsiI	CCGC	1 cut(s)	62
SspI	AATATT	1 cut(s)	116
SspMI	CTAG	5 cut(s)	440, 515, 699, 758, 792
StuI	AGGCCT	1 cut(s)	803
StyI	CCWWGG	1 cut(s)	925
TaaI	ACNGT	5 cut(s)	90, 603, 818, 922, 945
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	303, 390
TasI	AATT	6 cut(s)	566, 587, 622, 692, 765, 930
TatI	WGTACW	2 cut(s)	818, 940
TfiI	GAWTC	5 cut(s)	56, 134, 251, 840, 854
Tru1I	TTAA	2 cut(s)	12, 147
Tru9I	TTAA	2 cut(s)	12, 147
TscAI	CASTG	2 cut(s)	261, 613
TseFI	GTSAC	2 cut(s)	812, 916
Tsp45I	GTSAC	2 cut(s)	812, 916
TspDTI	ATGAA	6 cut(s)	87, 147, 353, 539, 561, 832
TspGWI	ACGGA	2 cut(s)	330, 800
TspRI	CASTG	2 cut(s)	261, 613
Tth111I	GACNNNGTC	1 cut(s)	218
XapI	RAATTY	3 cut(s)	566, 765, 930
XceI	RCATGY	2 cut(s)	456, 551
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	5 cut(s)	440, 515, 699, 758, 792
ZrmI	AGTACT	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.