Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005568

Physical Location & Seq

Genomic Coordinates Forward (+)

10963137 .. 10965149

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG147600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCGGAGACTAAGTACAAGTACCTGATTGAGGTCGAGAAGGGAAAGGCGGCCAAGGACGGCCGGCCGTCGCTCGGTCCCGTTTACCGGAGCCTCTTTGCCAAAGACGGCTTTCCGCAGCCGATTGCCGGAATGGACAGTTGCTGGGATGTTTTCCGCATGTCGGTGGAGAAAAATCCCGGAAACCGAATGCTTGGTCGTCGTGAGACTGTGAATGGGAAGGGTGGTAGATACGTTTGGTTAACTTACAAACAAGTCTATGATGTGGTAGTAAAAGTTGGAAATTCCATGCGCACTCTTGGTTTGGCAGAAGCTTGCAATGCTCATGGGCTCTATTGTGTTCCTTTATATGACACTCTAGCTGTTGAAGACATTGCCCAACGCATCAAAATATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

132

Amino Acids

14.77

Weight (kDa)

9.28

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64400 AT4G11030 AT4G23850
fragaria_vesca	FvH4_5g04520 FvH4_5g04520 FvH4_5g04520
malus_domestica	MD02G1279200.v1.1 MD06G1106100.v1.1 MD14G1128200.v1.1
prunus_persica	Prupe.5G118400_v2.0.a1 Prupe.5G118400_v2.0.a1
pyrus_communis	pycom06g10040
rosa_chinensis	RchiOBHm_Chr7g0179891 RchiOBHm_Chr7g0194931
rosa_laevigata	RLG00000004156
rosa_multiflora	Rmu_sc0008218.1_g000002 Rmu_sc0010214.1_g000001 Rmu_ssc0000157.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260880
rosa_rugosa	Rorug04G0299500 Rorug07G0019100 Rorug07G0019200
rosa_samantha	Rh1DG084200 Rh7AG146900 Rh7BG147600 Rh7CG151000 Rh7DG148100
rosa_wichuraiana	Rw7G012540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	293
AciI	CCGC	4 cut(s)	5, 50, 116, 157
AcoI	YGGCCR	3 cut(s)	51, 61, 65
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	2 cut(s)	17, 23
AfiI	CCNNNNNNNGG	5 cut(s)	31, 74, 87, 128, 163
AgsI	TTSAA	1 cut(s)	368
AluBI	AGCT	2 cut(s)	314, 362
AluI	AGCT	2 cut(s)	314, 362
Alw26I	GTCTC	2 cut(s)	2, 200
AlwNI	CAGNNNCTG	1 cut(s)	144
AoxI	GGCC	3 cut(s)	51, 61, 65
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	283
ArsI	GACNNNNNNTTYG	2 cut(s)	181, 213
AspLEI	GCGC	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	77
AsuC2I	CCSGG	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	130
BceAI	ACGGC	3 cut(s)	52, 76, 124
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	2 cut(s)	2, 200
BfaI	CTAG	1 cut(s)	359
BisI	GCNGC	2 cut(s)	51, 119
BlsI	GCNGC	2 cut(s)	52, 120
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	79, 92
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	87
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 74, 87, 128, 163
Bse118I	RCCGGY	1 cut(s)	63
Bse3DI	GCAATG	2 cut(s)	325, 372
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	5 cut(s)	31, 74, 87, 128, 163
BseMI	GCAATG	2 cut(s)	325, 372
BseX3I	CGGCCG	2 cut(s)	61, 65
BseXI	GCAGC	1 cut(s)	130
BseYI	CCCAGC	1 cut(s)	144
Bsh1285I	CGRYCG	2 cut(s)	64, 68
BshFI	GGCC	3 cut(s)	53, 63, 67
BsiEI	CGRYCG	2 cut(s)	64, 68
BsiSI	CCGG	4 cut(s)	64, 88, 129, 180
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	5 cut(s)	31, 74, 87, 128, 163
BsmAI	GTCTC	2 cut(s)	2, 200
BsmFI	GGGAC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	3 cut(s)	53, 63, 67
Bsp1286I	GDGCHC	1 cut(s)	333
BspACI	CCGC	4 cut(s)	5, 50, 116, 157
BspANI	GGCC	3 cut(s)	53, 63, 67
BspLI	GGNNCC	2 cut(s)	79, 92
BsrDI	GCAATG	2 cut(s)	325, 372
BsrFI	RCCGGY	1 cut(s)	63
BssAI	RCCGGY	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	140, 211
BstC8I	GCNNGC	2 cut(s)	65, 316
BstDEI	CTNAG	1 cut(s)	12
BstENI	CCTNNNNNAGG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	294
BstMAI	GTCTC	2 cut(s)	2, 200
BstMCI	CGRYCG	2 cut(s)	64, 68
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	375
BstZI	CGGCCG	2 cut(s)	61, 65
BsuRI	GGCC	3 cut(s)	53, 63, 67
BtsCI	GGATG	1 cut(s)	154
Cac8I	GCNNGC	2 cut(s)	65, 316
CaiI	CAGNNNCTG	1 cut(s)	144
CfoI	GCGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	16, 22
CviAII	CATG	3 cut(s)	160, 289, 326
CviJI	RGCY	9 cut(s)	53, 63, 67, 93, 111, 121, 314, 331, 362
CviKI_1	RGCY	9 cut(s)	53, 63, 67, 93, 111, 121, 314, 331, 362
CviQI	GTAC	2 cut(s)	16, 22
DdeI	CTNAG	1 cut(s)	12
EaeI	YGGCCR	3 cut(s)	51, 61, 65
EagI	CGGCCG	2 cut(s)	61, 65
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	2 cut(s)	61, 65
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	77
Eco52I	CGGCCG	2 cut(s)	61, 65
EcoNI	CCTNNNNNAGG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	3 cut(s)	163, 292, 329
FaiI	YATR	6 cut(s)	161, 261, 290, 327, 349, 351
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	3 cut(s)	159, 288, 325
Fnu4HI	GCNGC	2 cut(s)	51, 119
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	333
FseI	GGCCGGCC	1 cut(s)	67
Fsp4HI	GCNGC	2 cut(s)	51, 119
FspAI	RTGCGCAY	1 cut(s)	293
FspBI	CTAG	1 cut(s)	359
FspI	TGCGCA	1 cut(s)	293
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	2 cut(s)	51, 119
GsaI	CCCAGC	1 cut(s)	148
HaeIII	GGCC	3 cut(s)	53, 63, 67
HapII	CCGG	4 cut(s)	64, 88, 129, 180
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	163, 292, 329
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HindIII	AAGCTT	1 cut(s)	312
HpaI	GTTAAC	1 cut(s)	243
HpaII	CCGG	4 cut(s)	64, 88, 129, 180
Hpy166II	GTNNAC	2 cut(s)	85, 243
Hpy188III	TCNNGA	2 cut(s)	37, 203
Hpy8I	GTNNAC	2 cut(s)	85, 243
Hpy99I	CGWCG	2 cut(s)	73, 204
HpyAV	CCTTC	2 cut(s)	34, 214
HpyCH4III	ACNGT	2 cut(s)	140, 211
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	163, 292, 329
HspAI	GCGC	1 cut(s)	292
KroI	GCCGGC	1 cut(s)	63
KroNI	GCCGGC	1 cut(s)	65
KspAI	GTTAAC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	6 cut(s)	38, 77, 101, 130, 142, 193
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	234
MboII	GAAGA	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	1 cut(s)	283
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	2 cut(s)	25, 104
MroNI	GCCGGC	1 cut(s)	63
MseI	TTAA	2 cut(s)	242, 397
MslI	CAYNNNNRTG	1 cut(s)	164
MspI	CCGG	4 cut(s)	64, 88, 129, 180
MspR9I	CCNGG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	320
NaeI	GCCGGC	1 cut(s)	65
NciI	CCSGG	1 cut(s)	180
NgoMIV	GCCGGC	1 cut(s)	63
NlaIII	CATG	3 cut(s)	163, 292, 329
NlaIV	GGNNCC	2 cut(s)	79, 92
NsbI	TGCGCA	1 cut(s)	293
NspI	RCATGY	1 cut(s)	163
PctI	GAATGC	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	52, 120
PspFI	CCCAGC	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	79, 92
PspPI	GGNCC	1 cut(s)	77
PstNI	CAGNNNCTG	1 cut(s)	144
RigI	GGCCGGCC	1 cut(s)	67
RsaI	GTAC	2 cut(s)	17, 23
RsaNI	GTAC	2 cut(s)	16, 22
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	242, 397
SatI	GCNGC	2 cut(s)	51, 119
Sau96I	GGNCC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	5 cut(s)	27, 36, 237, 316, 364
SfaNI	GCATC	1 cut(s)	393
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	283
SsiI	CCGC	4 cut(s)	5, 50, 116, 157
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	140, 211
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	1 cut(s)	36
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	1 cut(s)	283
TatI	WGTACW	1 cut(s)	15
TauI	GCSGC	1 cut(s)	53
Tru1I	TTAA	2 cut(s)	242, 397
Tru9I	TTAA	2 cut(s)	242, 397
TseI	GCWGC	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	77
XagI	CCTNNNNNAGG	1 cut(s)	29
XapI	RAATTY	1 cut(s)	283
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.