Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005568

Physical Location & Seq

Genomic Coordinates Forward (+)

15479012 .. 15485920

Gene Structure 6909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG084200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTGTTCACAGCAAACAAATCATTTTTTCTATACTTCTACTTCTGTTTATTCTGACCAACAAGGCAACAAGGCAGCAAGAACAACACAGGCTTGCAATGCTCATGGGCTCTATTGTGTTCCTTTATATGACACTCTAGGTGCTGGTGCTGTGGAATTTATCATATGCCATGCTGAAGTTCCACTTGCTTTTGTAGAAGAAAAAAAGATATCTGAGCTGTTGAAGACATTGCCCAATGCATCAAAATATCTTAAGACACTTGTAAGCTTTGGCAAGGTTACCCCTGAACAAAAGGAATCAGTTGAAAAGCATGGATCTGTGATATATTCATGGAATGAATTTCTGCAACTGGGAGATAAAGACTTTGATCTTCCAGTAAAAAAGAAAAGTGATATCTGTACTATAATGTATACTAGTGGAACAACTGGCGACCCCAAGGGTGTACTGATATCCAATGAAAGCATCATTACTCTACTGGCTGGGGTGAAACGACTGCTGGAGAGTGTAAATGAAGAGATCTACCTTCCAAATACATACGAGACAGTGCATTTGAACCGCAATGTTGGGCTGCTCCAGGGATACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

195

Amino Acids

21.66

Weight (kDa)

5.95

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	29 - 163	5.1e-22	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64400 AT4G11030 AT4G23850
fragaria_vesca	FvH4_5g04520 FvH4_5g04520 FvH4_5g04520
malus_domestica	MD02G1279200.v1.1 MD06G1106100.v1.1 MD14G1128200.v1.1
prunus_persica	Prupe.5G118400_v2.0.a1 Prupe.5G118400_v2.0.a1
pyrus_communis	pycom06g10040
rosa_chinensis	RchiOBHm_Chr7g0179891 RchiOBHm_Chr7g0194931
rosa_laevigata	RLG00000004156
rosa_multiflora	Rmu_sc0008218.1_g000002 Rmu_sc0010214.1_g000001 Rmu_ssc0000157.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260880
rosa_rugosa	Rorug04G0299500 Rorug07G0019100 Rorug07G0019200
rosa_samantha	Rh1DG084200 Rh7AG146900 Rh7BG147600 Rh7CG151000 Rh7DG148100
rosa_wichuraiana	Rw7G012540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	410
AciI	CCGC	1 cut(s)	556
AclWI	GGATC	1 cut(s)	322
AcsI	RAATTY	2 cut(s)	155, 338
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	2 cut(s)	400, 444
AflII	CTTAAG	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	223, 305, 553
AhlI	ACTAGT	1 cut(s)	413
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	2 cut(s)	217, 267
AluI	AGCT	2 cut(s)	217, 267
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	1 cut(s)	322
ApeKI	GCWGC	2 cut(s)	74, 568
ApoI	RAATTY	2 cut(s)	155, 338
ArsI	GACNNNNNNTTYG	2 cut(s)	532, 564
AsuHPI	GGTGA	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	86, 555
BciT130I	CCWGG	1 cut(s)	575
BciVI	GTATCC	1 cut(s)	572
BcoDI	GTCTC	1 cut(s)	533
BcuI	ACTAGT	1 cut(s)	413
BfaI	CTAG	2 cut(s)	137, 414
BfrI	CTTAAG	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	572
BglII	AGATCT	1 cut(s)	516
BisI	GCNGC	2 cut(s)	75, 569
BlsI	GCNGC	2 cut(s)	76, 570
Bme1390I	CCNGG	1 cut(s)	575
BmrFI	CCNGG	1 cut(s)	575
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	2 cut(s)	248, 471
BmuI	ACTGGG	1 cut(s)	359
BpiI	GAAGAC	1 cut(s)	230
BpmI	CTGGAG	2 cut(s)	518, 557
BsaJI	CCNNGG	2 cut(s)	435, 574
Bse1I	ACTGG	4 cut(s)	354, 374, 430, 480
Bse3DI	GCAATG	3 cut(s)	103, 227, 565
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	2 cut(s)	435, 574
BseMI	GCAATG	3 cut(s)	103, 227, 565
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	4 cut(s)	354, 374, 430, 480
BseXI	GCAGC	2 cut(s)	86, 555
BseYI	CCCAGC	1 cut(s)	479
BsmAI	GTCTC	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	314, 367, 516
BspACI	CCGC	1 cut(s)	556
BspCNI	CTCAG	1 cut(s)	205
BspPI	GGATC	1 cut(s)	322
BspTI	CTTAAG	1 cut(s)	251
BsrDI	GCAATG	3 cut(s)	103, 227, 565
BsrI	ACTGG	4 cut(s)	354, 374, 430, 480
BssECI	CCNNGG	2 cut(s)	435, 574
BssMI	GATC	3 cut(s)	314, 367, 516
BssNAI	GTATAC	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	435
Bst1107I	GTATAC	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	1 cut(s)	507
BstAFI	CTTAAG	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	213
BstEII	GGTNACC	1 cut(s)	277
BstKTI	GATC	3 cut(s)	317, 370, 519
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	3 cut(s)	314, 367, 516
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	575
BstPI	GGTNACC	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	573
BstV1I	GCAGC	2 cut(s)	86, 555
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	2 cut(s)	314, 516
BstYI	RGATCY	2 cut(s)	314, 516
BstZ17I	GTATAC	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	572
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	399, 443
CviAII	CATG	4 cut(s)	104, 170, 311, 330
CviJI	RGCY	6 cut(s)	92, 109, 217, 267, 479, 568
CviKI_1	RGCY	6 cut(s)	92, 109, 217, 267, 479, 568
CviQI	GTAC	2 cut(s)	399, 443
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	3 cut(s)	316, 369, 518
DpnII	GATC	3 cut(s)	314, 367, 516
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	111
Eco32I	GATATC	3 cut(s)	210, 394, 450
Eco57I	CTGAAG	1 cut(s)	195
Eco91I	GGTNACC	1 cut(s)	277
EcoO65I	GGTNACC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	573
EcoRV	GATATC	3 cut(s)	210, 394, 450
EcoT14I	CCWWGG	1 cut(s)	435
EcoT22I	ATGCAT	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	4 cut(s)	107, 173, 314, 333
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	4 cut(s)	103, 169, 310, 329
FauNDI	CATATG	2 cut(s)	164, 584
FblI	GTMKAC	1 cut(s)	410
Fnu4HI	GCNGC	2 cut(s)	75, 569
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	2 cut(s)	75, 569
FspBI	CTAG	2 cut(s)	137, 414
GluI	GCNGC	2 cut(s)	75, 569
GsaI	CCCAGC	1 cut(s)	483
GsuI	CTGGAG	2 cut(s)	518, 557
Hin1II	CATG	4 cut(s)	107, 173, 314, 333
HindIII	AAGCTT	1 cut(s)	265
HinfI	GANTC	1 cut(s)	296
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	3 cut(s)	8, 411, 443
Hpy188I	TCNGA	2 cut(s)	55, 214
Hpy8I	GTNNAC	3 cut(s)	8, 411, 443
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4V	TGCA	4 cut(s)	96, 239, 346, 547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	4 cut(s)	107, 173, 314, 333
Kzo9I	GATC	3 cut(s)	314, 367, 516
LmnI	GCTCC	1 cut(s)	576
Lsp1109I	GCAGC	2 cut(s)	86, 555
LweI	GCATC	2 cut(s)	248, 471
MaeI	CTAG	2 cut(s)	137, 414
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	3 cut(s)	316, 369, 518
MboI	GATC	3 cut(s)	314, 367, 516
MboII	GAAGA	4 cut(s)	209, 235, 362, 524
MflI	RGATCY	2 cut(s)	314, 516
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	2 cut(s)	155, 338
Mph1103I	ATGCAT	1 cut(s)	241
MseI	TTAA	1 cut(s)	252
MspCI	CTTAAG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	575
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeI	CATATG	2 cut(s)	164, 584
NdeII	GATC	3 cut(s)	314, 367, 516
NlaIII	CATG	4 cut(s)	107, 173, 314, 333
NsiI	ATGCAT	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	76, 570
Psp6I	CCWGG	1 cut(s)	573
PspEI	GGTNACC	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	573
PsuI	RGATCY	2 cut(s)	314, 516
RsaI	GTAC	2 cut(s)	400, 444
RsaNI	GTAC	2 cut(s)	399, 443
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	2 cut(s)	75, 569
Sau3AI	GATC	3 cut(s)	314, 367, 516
ScrFI	CCNGG	1 cut(s)	575
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	5 cut(s)	142, 219, 269, 279, 525
SfaNI	GCATC	2 cut(s)	248, 471
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SpeI	ACTAGT	1 cut(s)	413
Sse9I	AATT	2 cut(s)	155, 338
SsiI	CCGC	1 cut(s)	556
SspMI	CTAG	2 cut(s)	137, 414
StyD4I	CCNGG	1 cut(s)	573
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	1 cut(s)	544
TasI	AATT	2 cut(s)	155, 338
TatI	WGTACW	2 cut(s)	398, 442
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	549
TseI	GCWGC	2 cut(s)	74, 568
TspDTI	ATGAA	4 cut(s)	318, 351, 471, 525
TspRI	CASTG	1 cut(s)	549
Vha464I	CTTAAG	1 cut(s)	251
XapI	RAATTY	2 cut(s)	155, 338
XmiI	GTMKAC	1 cut(s)	410
XspI	CTAG	2 cut(s)	137, 414
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.