Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005568

Physical Location & Seq

Genomic Coordinates Forward (+)

33522989 .. 33523627

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1279200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTATACTAGTGGAACAACTGGTGACCCCAAGGGAGTACTGATATCCAATGAAAGCATCATTACTCTTCTGGCTGGGGTGAAGCTTTTGCTAGAGAGTGTAAATGAACAGCTCAGTGAGGAGGATGTATATCTTTCATTTCTTCCCCTGGCACATATCTTCGATCGGGTGATTGAGGAGTTATTTATCTGGACTGGCGCCCAAATAGGGTTTTGGCATGGGGATGTCAAATTATTAACTGAAGACATTGGGGAACGAAAACCGACTATCTTCTGTGCTGTTCCACGTGTGTTAGACAGAATCTATTCAGGCTTGACACAGAAGATTTCATCAGGCGGCTTTCTGAAAAAGACCTTGTTCAATGTTGCATATTCATACAAGTATCATAACATGCAAAATGGCCATGGGCATGTACAGGCGTCTCCAATTGCTGACAAAGTTGTGTTTAGTAAGGTAAAGCAAGGATTGGGCGGTAGTGGTGGAGCTTCTTCCTCTGTACCTCCGCCATGGTTGCCGCCTTTGAATGAGATTGACAAAACCAAAGTTTGTCAACTCACACCCAAAGGCCTTCTCTCCGTCCGTGACAAACAACAACGAAGAACTTCAATAAACCGCCGTCAAACGACTAGCCGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

213

Amino Acids

23.43

Weight (kDa)

9.32

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	1 - 115	3.7e-25	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64400 AT4G11030 AT4G23850
fragaria_vesca	FvH4_5g04520 FvH4_5g04520 FvH4_5g04520
malus_domestica	MD02G1279200.v1.1 MD06G1106100.v1.1 MD14G1128200.v1.1
prunus_persica	Prupe.5G118400_v2.0.a1 Prupe.5G118400_v2.0.a1
pyrus_communis	pycom06g10040
rosa_chinensis	RchiOBHm_Chr7g0179891 RchiOBHm_Chr7g0194931
rosa_laevigata	RLG00000004156
rosa_multiflora	Rmu_sc0008218.1_g000002 Rmu_sc0010214.1_g000001 Rmu_ssc0000157.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260880
rosa_rugosa	Rorug04G0299500 Rorug07G0019100 Rorug07G0019200
rosa_samantha	Rh1DG084200 Rh7AG146900 Rh7BG147600 Rh7CG151000 Rh7DG148100
rosa_wichuraiana	Rw7G012540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	631
AccB1I	GGYRCC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	5 cut(s)	336, 471, 503, 515, 613
AcoI	YGGCCR	1 cut(s)	400
AcuI	CTGAAG	1 cut(s)	261
AcvI	CACGTG	1 cut(s)	287
AcyI	GRCGYC	2 cut(s)	198, 419
AfaI	GTAC	3 cut(s)	39, 414, 498
AfiI	CCNNNNNNNGG	1 cut(s)	207
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	3 cut(s)	361, 523, 606
AhlI	ACTAGT	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	3 cut(s)	85, 112, 485
AluI	AGCT	3 cut(s)	85, 112, 485
Alw26I	GTCTC	1 cut(s)	426
AoxI	GGCC	2 cut(s)	400, 565
Asp700I	GAANNNNTTC	2 cut(s)	304, 601
AspLEI	GCGC	1 cut(s)	200
AsuHPI	GGTGA	3 cut(s)	35, 91, 181
BalI	TGGCCA	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	197
BbrPI	CACGTG	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	249
BceAI	ACGGC	1 cut(s)	600
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	426
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	3 cut(s)	9, 92, 627
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	2 cut(s)	337, 515
BlsI	GCNGC	2 cut(s)	338, 516
BmcAI	AGTACT	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	249
BsaAI	YACGTR	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	129
BsaHI	GRCGYC	2 cut(s)	198, 419
BsaJI	CCNNGG	4 cut(s)	30, 147, 403, 506
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse118I	RCCGGY	1 cut(s)	630
Bse1I	ACTGG	2 cut(s)	25, 199
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	4 cut(s)	30, 147, 403, 506
BseGI	GGATG	2 cut(s)	130, 229
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	2 cut(s)	25, 199
BseRI	GAGGAG	2 cut(s)	134, 191
BseYI	CCCAGC	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	402, 567
BshNI	GGYRCC	1 cut(s)	197
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	631
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	426
BsmBI	CGTCTC	1 cut(s)	426
BsnI	GGCC	2 cut(s)	402, 567
Bsp1407I	TGTACA	1 cut(s)	412
Bsp143I	GATC	1 cut(s)	163
Bsp19I	CCATGG	2 cut(s)	403, 506
BspACI	CCGC	5 cut(s)	336, 471, 503, 515, 613
BspANI	GGCC	2 cut(s)	402, 567
BspCNI	CTCAG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	635
BspLI	GGNNCC	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	630
BsrGI	TGTACA	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	25, 199
BssAI	RCCGGY	1 cut(s)	630
BssECI	CCNNGG	4 cut(s)	30, 147, 403, 506
BssMI	GATC	1 cut(s)	163
BssNAI	GTATAC	1 cut(s)	6
BssNI	GRCGYC	2 cut(s)	198, 419
BssT1I	CCWWGG	3 cut(s)	30, 403, 506
Bst1107I	GTATAC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	72
BstACI	GRCGYC	2 cut(s)	198, 419
BstAUI	TGTACA	1 cut(s)	412
BstBAI	YACGTR	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	113
BstDSI	CCRYGG	2 cut(s)	403, 506
BstEII	GGTNACC	1 cut(s)	23
BstF5I	GGATG	2 cut(s)	130, 229
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	1 cut(s)	163
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	511
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	2 cut(s)	394, 413
BstPI	GGTNACC	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	147
BstV2I	GAAGAC	1 cut(s)	249
BstZ17I	GTATAC	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	402, 567
BtgI	CCRYGG	2 cut(s)	403, 506
BtsCI	GGATG	2 cut(s)	130, 229
BtsIMutI	CAGTG	1 cut(s)	121
CciI	TCATGA	1 cut(s)	635
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	630
CseI	GACGC	1 cut(s)	408
Csp6I	GTAC	3 cut(s)	38, 413, 497
CviAII	CATG	6 cut(s)	218, 391, 404, 410, 507, 636
CviJI	RGCY	9 cut(s)	74, 85, 112, 312, 339, 402, 485, 567, 630
CviKI_1	RGCY	9 cut(s)	74, 85, 112, 312, 339, 402, 485, 567, 630
CviQI	GTAC	3 cut(s)	38, 413, 497
DdeI	CTNAG	1 cut(s)	113
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
DrdI	GACNNNNNNGTC	1 cut(s)	631
DseDI	GACNNNNNNGTC	1 cut(s)	631
EaeI	YGGCCR	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
EciI	GGCGGA	1 cut(s)	492
Eco130I	CCWWGG	3 cut(s)	30, 403, 506
Eco147I	AGGCCT	1 cut(s)	567
Eco32I	GATATC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	261
Eco72I	CACGTG	1 cut(s)	287
Eco91I	GGTNACC	1 cut(s)	23
EcoO65I	GGTNACC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	147
EcoRV	GATATC	1 cut(s)	45
EcoT14I	CCWWGG	3 cut(s)	30, 403, 506
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
ErhI	CCWWGG	3 cut(s)	30, 403, 506
Esp3I	CGTCTC	1 cut(s)	426
FaeI	CATG	6 cut(s)	221, 394, 407, 413, 510, 639
FatI	CATG	6 cut(s)	217, 390, 403, 409, 506, 635
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	337, 515
FokI	GGATG	2 cut(s)	137, 236
Fsp4HI	GCNGC	2 cut(s)	337, 515
FspBI	CTAG	3 cut(s)	9, 92, 627
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	2 cut(s)	337, 515
GsaI	CCCAGC	1 cut(s)	78
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	402, 567
HapII	CCGG	1 cut(s)	631
HgaI	GACGC	1 cut(s)	408
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	2 cut(s)	198, 419
Hin1II	CATG	6 cut(s)	221, 394, 407, 413, 510, 639
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	551
HindII	GTYRAC	1 cut(s)	551
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	1 cut(s)	300
HpaII	CCGG	1 cut(s)	631
HphI	GGTGA	3 cut(s)	35, 91, 181
Hpy166II	GTNNAC	2 cut(s)	6, 551
Hpy188I	TCNGA	1 cut(s)	345
Hpy188III	TCNNGA	2 cut(s)	190, 636
Hpy8I	GTNNAC	2 cut(s)	6, 551
HpyAV	CCTTC	1 cut(s)	578
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	2 cut(s)	368, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	511
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	286
Hsp92I	GRCGYC	2 cut(s)	198, 419
Hsp92II	CATG	6 cut(s)	221, 394, 407, 413, 510, 639
HspAI	GCGC	1 cut(s)	198
KasI	GGCGCC	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	482
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	3 cut(s)	9, 92, 627
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	2 cut(s)	23, 581
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	8 cut(s)	59, 134, 151, 254, 262, 334, 480, 609
MfeI	CAATTG	1 cut(s)	426
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	2 cut(s)	230, 426
MluNI	TGGCCA	1 cut(s)	402
Mly113I	GGCGCC	1 cut(s)	198
MnlI	CCTC	5 cut(s)	112, 115, 169, 502, 510
Mox20I	TGGCCA	1 cut(s)	402
MroXI	GAANNNNTTC	2 cut(s)	304, 601
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	1 cut(s)	236
MslI	CAYNNNNRTG	2 cut(s)	222, 408
Msp20I	TGGCCA	1 cut(s)	402
MspI	CCGG	1 cut(s)	631
MspR9I	CCNGG	1 cut(s)	149
MunI	CAATTG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	511
NarI	GGCGCC	1 cut(s)	198
NcoI	CCATGG	2 cut(s)	403, 506
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	6 cut(s)	221, 394, 407, 413, 510, 639
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	2 cut(s)	23, 581
NspI	RCATGY	2 cut(s)	394, 413
PagI	TCATGA	1 cut(s)	635
PceI	AGGCCT	1 cut(s)	567
PdmI	GAANNNNTTC	2 cut(s)	304, 601
PfeI	GAWTC	1 cut(s)	300
PkrI	GCNGC	2 cut(s)	338, 516
Ple19I	CGATCG	1 cut(s)	166
PluTI	GGCGCC	1 cut(s)	201
PmaCI	CACGTG	1 cut(s)	287
PmlI	CACGTG	1 cut(s)	287
Ppu21I	YACGTR	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	147
PspCI	CACGTG	1 cut(s)	287
PspEI	GGTNACC	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	199
PvuI	CGATCG	1 cut(s)	166
RsaI	GTAC	3 cut(s)	39, 414, 498
RsaNI	GTAC	3 cut(s)	38, 413, 497
RseI	CAYNNNNRTG	2 cut(s)	222, 408
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	2 cut(s)	337, 515
Sau3AI	GATC	1 cut(s)	163
ScaI	AGTACT	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	7 cut(s)	87, 114, 289, 356, 456, 487, 502
SfaNI	GCATC	1 cut(s)	66
SfoI	GGCGCC	1 cut(s)	199
SmiMI	CAYNNNNRTG	2 cut(s)	222, 408
SpeI	ACTAGT	1 cut(s)	8
Sse9I	AATT	2 cut(s)	230, 426
SseBI	AGGCCT	1 cut(s)	567
SsiI	CCGC	5 cut(s)	336, 471, 503, 515, 613
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	3 cut(s)	9, 92, 627
StuI	AGGCCT	1 cut(s)	567
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	3 cut(s)	30, 403, 506
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	162
TasI	AATT	2 cut(s)	230, 426
TatI	WGTACW	2 cut(s)	37, 412
TauI	GCSGC	2 cut(s)	339, 517
TfiI	GAWTC	1 cut(s)	300
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	2 cut(s)	23, 581
Tsp45I	GTSAC	2 cut(s)	23, 581
TspDTI	ATGAA	5 cut(s)	66, 120, 126, 318, 363
TspGWI	ACGGA	2 cut(s)	565, 569
TspRI	CASTG	1 cut(s)	121
XceI	RCATGY	2 cut(s)	394, 413
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	2 cut(s)	304, 601
XspI	CTAG	3 cut(s)	9, 92, 627
ZrmI	AGTACT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.