Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010214.1

Orthogroup ID

OG0005568

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1607

Gene Structure 1607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010214.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 638 bp

gtgctggtgctgtggaatttatcatatgccatgctgaagttccacttgcttttgtagaagaaaaaaagatatctgagctgttgaagacattgcccaacgcatcaaaatatcttaagacacttgtaagctttggcaaggttacccctgaacaaaaggaatcagttgaaaagcatggatctgtgatatattcatggaatgaatttctgcaactgggagataaagactttgatcttccagtaaaaaagaaaagtgatatctgtactataatgtatactagtggaacaactggtgaccccaagggtgtactgatatccaatgaaagcatcattactctactggctggggtgaaacgcctgctggagagtgtaaatgaagagttgggcgtgaacgacgtatatctttcctttcttcctcttgcacatatctttgatcgggttatcgaggagttatttatctggactggtgcctcgatagggttttggcgtggggatgtcaaattgttaactgaagacattgcggagctaaaaccaactattttttgtgctgttcctcgcgttttagatagaatctacgcaggtatatcagaatatggaaacatcatagctcttggaagaagttgtaaacctaaaaaaactctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

212

Amino Acids

23.54

Weight (kDa)

5.73

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64400 AT4G11030 AT4G23850
fragaria_vesca	FvH4_5g04520 FvH4_5g04520 FvH4_5g04520
malus_domestica	MD02G1279200.v1.1 MD06G1106100.v1.1 MD14G1128200.v1.1
prunus_persica	Prupe.5G118400_v2.0.a1 Prupe.5G118400_v2.0.a1
pyrus_communis	pycom06g10040
rosa_chinensis	RchiOBHm_Chr7g0179891 RchiOBHm_Chr7g0194931
rosa_laevigata	RLG00000004156
rosa_multiflora	Rmu_sc0008218.1_g000002 Rmu_sc0010214.1_g000001 Rmu_ssc0000157.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260880
rosa_rugosa	Rorug04G0299500 Rorug07G0019100 Rorug07G0019200
rosa_samantha	Rh1DG084200 Rh7AG146900 Rh7BG147600 Rh7CG151000 Rh7DG148100
rosa_wichuraiana	Rw7G012540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	565
AccB1I	GGYRCC	1 cut(s)	463
AccI	GTMKAC	1 cut(s)	271
AccII	CGCG	1 cut(s)	554
AciI	CCGC	1 cut(s)	517
AclWI	GGATC	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	16, 199
AcuI	CTGAAG	2 cut(s)	56, 527
AfaI	GTAC	2 cut(s)	261, 305
AfiI	CCNNNNNNNGG	1 cut(s)	473
AflII	CTTAAG	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	84, 166
AhlI	ACTAGT	1 cut(s)	274
AluBI	AGCT	4 cut(s)	78, 128, 522, 604
AluI	AGCT	4 cut(s)	78, 128, 522, 604
AlwI	GGATC	1 cut(s)	183
ApoI	RAATTY	2 cut(s)	16, 199
AsuHPI	GGTGA	2 cut(s)	301, 357
BanI	GGYRCC	1 cut(s)	463
BbsI	GAAGAC	2 cut(s)	91, 515
BcuI	ACTAGT	1 cut(s)	274
BfaI	CTAG	1 cut(s)	275
BfrI	CTTAAG	1 cut(s)	112
BfuAI	ACCTGC	1 cut(s)	565
BmiI	GGNNCC	1 cut(s)	465
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	2 cut(s)	109, 332
BmuI	ACTGGG	1 cut(s)	220
BpiI	GAAGAC	2 cut(s)	91, 515
BpmI	CTGGAG	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse1I	ACTGG	5 cut(s)	215, 235, 291, 341, 465
Bse3DI	GCAATG	2 cut(s)	88, 512
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	495
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMI	GCAATG	2 cut(s)	88, 512
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	5 cut(s)	215, 235, 291, 341, 465
BseRI	GAGGAG	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	554
BshNI	GGYRCC	1 cut(s)	463
BslI	CCNNNNNNNGG	1 cut(s)	473
Bsp143I	GATC	3 cut(s)	175, 228, 429
BspACI	CCGC	1 cut(s)	517
BspCNI	CTCAG	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	554
BspLI	GGNNCC	1 cut(s)	465
BspMI	ACCTGC	1 cut(s)	565
BspPI	GGATC	1 cut(s)	183
BspT107I	GGYRCC	1 cut(s)	463
BspTI	CTTAAG	1 cut(s)	112
BsrDI	GCAATG	2 cut(s)	88, 512
BsrI	ACTGG	5 cut(s)	215, 235, 291, 341, 465
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	3 cut(s)	175, 228, 429
BssNAI	GTATAC	1 cut(s)	272
BssT1I	CCWWGG	1 cut(s)	296
Bst1107I	GTATAC	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	368
BstAFI	CTTAAG	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	1 cut(s)	74
BstEII	GGTNACC	2 cut(s)	138, 289
BstF5I	GGATG	1 cut(s)	495
BstFNI	CGCG	1 cut(s)	554
BstKTI	GATC	3 cut(s)	178, 231, 432
BstMBI	GATC	3 cut(s)	175, 228, 429
BstPI	GGTNACC	2 cut(s)	138, 289
BstUI	CGCG	1 cut(s)	554
BstV2I	GAAGAC	2 cut(s)	91, 515
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BstZ17I	GTATAC	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	495
BveI	ACCTGC	1 cut(s)	565
Cac8I	GCNNGC	1 cut(s)	355
Csp6I	GTAC	2 cut(s)	260, 304
CviAII	CATG	3 cut(s)	31, 172, 191
CviJI	RGCY	5 cut(s)	78, 128, 340, 522, 604
CviKI_1	RGCY	5 cut(s)	78, 128, 340, 522, 604
CviQI	GTAC	2 cut(s)	260, 304
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	3 cut(s)	177, 230, 431
DpnII	GATC	3 cut(s)	175, 228, 429
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Eco130I	CCWWGG	1 cut(s)	296
Eco32I	GATATC	3 cut(s)	71, 255, 311
Eco57I	CTGAAG	2 cut(s)	56, 527
Eco91I	GGTNACC	2 cut(s)	138, 289
EcoO65I	GGTNACC	2 cut(s)	138, 289
EcoRV	GATATC	3 cut(s)	71, 255, 311
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	3 cut(s)	34, 175, 194
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	3 cut(s)	30, 171, 190
FauNDI	CATATG	1 cut(s)	25
FblI	GTMKAC	1 cut(s)	271
FokI	GGATG	1 cut(s)	502
FspBI	CTAG	1 cut(s)	275
GsaI	CCCAGC	1 cut(s)	344
GsuI	CTGGAG	1 cut(s)	379
Hin1II	CATG	3 cut(s)	34, 175, 194
HincII	GTYRAC	1 cut(s)	503
HindII	GTYRAC	1 cut(s)	503
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	2 cut(s)	157, 566
HpaI	GTTAAC	1 cut(s)	503
HphI	GGTGA	2 cut(s)	301, 357
Hpy166II	GTNNAC	5 cut(s)	272, 304, 387, 503, 622
Hpy188I	TCNGA	2 cut(s)	75, 585
Hpy188III	TCNNGA	1 cut(s)	456
Hpy8I	GTNNAC	5 cut(s)	272, 304, 387, 503, 622
Hpy99I	CGWCG	1 cut(s)	394
HpyCH4IV	ACGT	1 cut(s)	392
HpyCH4V	TGCA	2 cut(s)	207, 418
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	392
Hsp92II	CATG	3 cut(s)	34, 175, 194
KspAI	GTTAAC	1 cut(s)	503
Kzo9I	GATC	3 cut(s)	175, 228, 429
LmnI	GCTCC	1 cut(s)	519
LweI	GCATC	2 cut(s)	109, 332
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	392
MaeIII	GTNAC	2 cut(s)	138, 289
MalI	GATC	3 cut(s)	177, 230, 431
MboI	GATC	3 cut(s)	175, 228, 429
MboII	GAAGA	7 cut(s)	70, 96, 223, 385, 400, 520, 623
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	3 cut(s)	16, 199, 496
MnlI	CCTC	4 cut(s)	422, 435, 477, 560
MseI	TTAA	2 cut(s)	113, 502
MspCI	CTTAAG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	554
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	3 cut(s)	175, 228, 429
NlaIII	CATG	3 cut(s)	34, 175, 194
NlaIV	GGNNCC	1 cut(s)	465
NmuCI	GTSAC	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	157, 566
PspEI	GGTNACC	2 cut(s)	138, 289
PspFI	CCCAGC	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	465
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	2 cut(s)	261, 305
RsaNI	GTAC	2 cut(s)	260, 304
SaqAI	TTAA	2 cut(s)	113, 502
Sau3AI	GATC	3 cut(s)	175, 228, 429
SetI	ASST	8 cut(s)	80, 130, 140, 395, 524, 579, 606, 627
SfaNI	GCATC	2 cut(s)	109, 332
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
SpeI	ACTAGT	1 cut(s)	274
Sse9I	AATT	3 cut(s)	16, 199, 496
SsiI	CCGC	1 cut(s)	517
SspMI	CTAG	1 cut(s)	275
StyI	CCWWGG	1 cut(s)	296
TaiI	ACGT	1 cut(s)	395
TaqI	TCGA	2 cut(s)	440, 469
TasI	AATT	3 cut(s)	16, 199, 496
TatI	WGTACW	2 cut(s)	259, 303
TfiI	GAWTC	2 cut(s)	157, 566
Tru1I	TTAA	2 cut(s)	113, 502
Tru9I	TTAA	2 cut(s)	113, 502
TseFI	GTSAC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	4 cut(s)	179, 212, 332, 386
Vha464I	CTTAAG	1 cut(s)	112
XapI	RAATTY	2 cut(s)	16, 199
XmiI	GTMKAC	1 cut(s)	271
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.