Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005568

Physical Location & Seq

Genomic Coordinates Reverse (-)

2020748 .. 2024484

Gene Structure 3737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16038

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGCAATGCCAAATGTGGAAGAGGACCAGCCTTCAAGTTTGTAATGGACGCCAAGAGATGAAGTATCTTCACATTTCAAGTCTATCATATGAAGTGTTTTCCTATTTCAAAACAACCTATAAGCATGGAGTAAAAGTCTATGATGTGGTAGTAAAAGTTGGAAATTCCATGCGCTCTCTTGGTTTGGCACAAGGAGACAAATGTGGTATATTTGGTGCTAATTGCCCAGAATGGATTATGAGCATGGAGGCTTGCAATGTTCATGGGCTCTATTGTGTTCCTTTATATGACACTCTAGGTGCTGGTGCTGTGGAATTTATCATATGCCATGCTGAAGTTCCACTTGCTTTTGTAGAAGAAAAAAAGATATCTGAGCTGTTGAAGACATTGCCTAATGCATCAAAATATCTTAAGACACTTGTAAGCTTTGGCAAGGTTACCCCTGAACAAAAGGAATCAGTTGAAAAGCATGGATCTGTGATATATTCATGGAATGAATTTCTGCAACTGGGAGATAAAGACTATGATCTTCCAGTAAAAAAGAAAAGTGATATCTGTACTATAATGTATACTAGTGGAACAACTGGCGACCCCAAGGGTGTACTGATATCCAATGAAAGCATCATTACTCTACTGGCTGGGGTGAAACGACTGCTGGAGAGTGTAAATGAAGAGATCTACCTTCCAAATACATACGAGACAGTGCATTTGAACCGCAATGTTGGGCTGCTCCAGGGATACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

248

Amino Acids

27.83

Weight (kDa)

6.99

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	35 - 216	2.1e-33	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64400 AT4G11030 AT4G23850
fragaria_vesca	FvH4_5g04520 FvH4_5g04520 FvH4_5g04520
malus_domestica	MD02G1279200.v1.1 MD06G1106100.v1.1 MD14G1128200.v1.1
prunus_persica	Prupe.5G118400_v2.0.a1 Prupe.5G118400_v2.0.a1
pyrus_communis	pycom06g10040
rosa_chinensis	RchiOBHm_Chr7g0179891 RchiOBHm_Chr7g0194931
rosa_laevigata	RLG00000004156
rosa_multiflora	Rmu_sc0008218.1_g000002 Rmu_sc0010214.1_g000001 Rmu_ssc0000157.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260880
rosa_rugosa	Rorug04G0299500 Rorug07G0019100 Rorug07G0019200
rosa_samantha	Rh1DG084200 Rh7AG146900 Rh7BG147600 Rh7CG151000 Rh7DG148100
rosa_wichuraiana	Rw7G012540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	569
AciI	CCGC	1 cut(s)	715
AclWI	GGATC	1 cut(s)	481
AcsI	RAATTY	3 cut(s)	163, 314, 497
AcuI	CTGAAG	1 cut(s)	354
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	2 cut(s)	559, 603
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	6 cut(s)	35, 78, 109, 382, 464, 712
AhlI	ACTAGT	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	732
AluBI	AGCT	2 cut(s)	376, 426
AluI	AGCT	2 cut(s)	376, 426
Alw26I	GTCTC	2 cut(s)	189, 692
AlwI	GGATC	1 cut(s)	481
ApeKI	GCWGC	1 cut(s)	727
ApoI	RAATTY	3 cut(s)	163, 314, 497
ArsI	GACNNNNNNTTYG	2 cut(s)	691, 723
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	655
AvaII	GGWCC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	389
BbvI	GCAGC	1 cut(s)	714
BciT130I	CCWGG	1 cut(s)	734
BciVI	GTATCC	1 cut(s)	731
BcoDI	GTCTC	2 cut(s)	189, 692
BcuI	ACTAGT	1 cut(s)	572
BfaI	CTAG	2 cut(s)	296, 573
BfrI	CTTAAG	1 cut(s)	410
BfuI	GTATCC	1 cut(s)	731
BglII	AGATCT	1 cut(s)	675
BisI	GCNGC	1 cut(s)	728
BlsI	GCNGC	1 cut(s)	729
Bme1390I	CCNGG	1 cut(s)	734
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	734
BmrI	ACTGGG	1 cut(s)	518
BmsI	GCATC	2 cut(s)	407, 630
BmuI	ACTGGG	1 cut(s)	518
BpiI	GAAGAC	1 cut(s)	389
BpmI	CTGGAG	2 cut(s)	677, 716
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	594, 733
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bse1I	ACTGG	4 cut(s)	513, 533, 589, 639
Bse3DI	GCAATG	4 cut(s)	11, 262, 386, 724
BseBI	CCWGG	1 cut(s)	734
BseDI	CCNNGG	2 cut(s)	594, 733
BseMI	GCAATG	4 cut(s)	11, 262, 386, 724
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	4 cut(s)	513, 533, 589, 639
BseXI	GCAGC	1 cut(s)	714
BseYI	CCCAGC	1 cut(s)	638
BsmAI	GTCTC	2 cut(s)	189, 692
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	473, 526, 675
BspACI	CCGC	1 cut(s)	715
BspCNI	CTCAG	1 cut(s)	364
BspPI	GGATC	1 cut(s)	481
BspTI	CTTAAG	1 cut(s)	410
BsrDI	GCAATG	4 cut(s)	11, 262, 386, 724
BsrI	ACTGG	4 cut(s)	513, 533, 589, 639
BssECI	CCNNGG	2 cut(s)	594, 733
BssMI	GATC	3 cut(s)	473, 526, 675
BssNAI	GTATAC	1 cut(s)	570
BssNI	GRCGYC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	594
Bst1107I	GTATAC	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	734
Bst4CI	ACNGT	1 cut(s)	703
Bst6I	CTCTTC	2 cut(s)	14, 666
BstACI	GRCGYC	1 cut(s)	49
BstAFI	CTTAAG	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	1 cut(s)	372
BstEII	GGTNACC	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	3 cut(s)	476, 529, 678
BstMAI	GTCTC	2 cut(s)	189, 692
BstMBI	GATC	3 cut(s)	473, 526, 675
BstNI	CCWGG	1 cut(s)	734
BstPI	GGTNACC	1 cut(s)	436
BstSCI	CCNGG	1 cut(s)	732
BstV1I	GCAGC	1 cut(s)	714
BstV2I	GAAGAC	1 cut(s)	389
BstX2I	RGATCY	2 cut(s)	473, 675
BstYI	RGATCY	2 cut(s)	473, 675
BstZ17I	GTATAC	1 cut(s)	570
BsuI	GTATCC	1 cut(s)	731
BtsIMutI	CAGTG	1 cut(s)	708
Cac8I	GCNNGC	1 cut(s)	253
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	24
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	558, 602
CviAII	CATG	7 cut(s)	125, 169, 244, 263, 329, 470, 489
CviJI	RGCY	7 cut(s)	30, 251, 268, 376, 426, 638, 727
CviKI_1	RGCY	7 cut(s)	30, 251, 268, 376, 426, 638, 727
CviQI	GTAC	2 cut(s)	558, 602
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	3 cut(s)	475, 528, 677
DpnII	GATC	3 cut(s)	473, 526, 675
Eam1104I	CTCTTC	2 cut(s)	14, 666
EarI	CTCTTC	2 cut(s)	14, 666
Eco130I	CCWWGG	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	270
Eco32I	GATATC	3 cut(s)	369, 553, 609
Eco47I	GGWCC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	354
Eco91I	GGTNACC	1 cut(s)	436
EcoO65I	GGTNACC	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	732
EcoRV	GATATC	3 cut(s)	369, 553, 609
EcoT14I	CCWWGG	1 cut(s)	594
EcoT22I	ATGCAT	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	7 cut(s)	128, 172, 247, 266, 332, 473, 492
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FatI	CATG	7 cut(s)	124, 168, 243, 262, 328, 469, 488
FauNDI	CATATG	3 cut(s)	88, 323, 743
FblI	GTMKAC	1 cut(s)	569
Fnu4HI	GCNGC	1 cut(s)	728
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	728
FspBI	CTAG	2 cut(s)	296, 573
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	1 cut(s)	728
GsaI	CCCAGC	1 cut(s)	642
GsuI	CTGGAG	2 cut(s)	677, 716
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	7 cut(s)	128, 172, 247, 266, 332, 473, 492
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	424
HinfI	GANTC	1 cut(s)	455
HphI	GGTGA	1 cut(s)	655
Hpy166II	GTNNAC	2 cut(s)	570, 602
Hpy188I	TCNGA	1 cut(s)	373
Hpy8I	GTNNAC	2 cut(s)	570, 602
HpyAV	CCTTC	2 cut(s)	41, 692
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4V	TGCA	5 cut(s)	4, 255, 398, 505, 706
HpyF3I	CTNAG	1 cut(s)	372
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	7 cut(s)	128, 172, 247, 266, 332, 473, 492
HspAI	GCGC	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	473, 526, 675
LmnI	GCTCC	1 cut(s)	735
Lsp1109I	GCAGC	1 cut(s)	714
LweI	GCATC	2 cut(s)	407, 630
MaeI	CTAG	2 cut(s)	296, 573
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	3 cut(s)	475, 528, 677
MboI	GATC	3 cut(s)	473, 526, 675
MboII	GAAGA	6 cut(s)	31, 59, 368, 394, 521, 683
MflI	RGATCY	2 cut(s)	473, 675
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	4 cut(s)	163, 220, 314, 497
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	2 cut(s)	15, 241
Mph1103I	ATGCAT	1 cut(s)	400
MseI	TTAA	1 cut(s)	411
MspCI	CTTAAG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	734
MvaI	CCWGG	1 cut(s)	734
NdeI	CATATG	3 cut(s)	88, 323, 743
NdeII	GATC	3 cut(s)	473, 526, 675
NlaIII	CATG	7 cut(s)	128, 172, 247, 266, 332, 473, 492
NsiI	ATGCAT	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	455
PkrI	GCNGC	1 cut(s)	729
Psp6I	CCWGG	1 cut(s)	732
PspEI	GGTNACC	1 cut(s)	436
PspFI	CCCAGC	1 cut(s)	638
PspGI	CCWGG	1 cut(s)	732
PspPI	GGNCC	1 cut(s)	24
PsuI	RGATCY	2 cut(s)	473, 675
RsaI	GTAC	2 cut(s)	559, 603
RsaNI	GTAC	2 cut(s)	558, 602
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	1 cut(s)	728
Sau3AI	GATC	3 cut(s)	473, 526, 675
Sau96I	GGNCC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	734
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	6 cut(s)	119, 301, 378, 428, 438, 684
SfaNI	GCATC	2 cut(s)	407, 630
SinI	GGWCC	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SpeI	ACTAGT	1 cut(s)	572
Sse9I	AATT	4 cut(s)	163, 220, 314, 497
SsiI	CCGC	1 cut(s)	715
SspMI	CTAG	2 cut(s)	296, 573
StyD4I	CCNGG	1 cut(s)	732
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	1 cut(s)	703
TasI	AATT	4 cut(s)	163, 220, 314, 497
TatI	WGTACW	2 cut(s)	557, 601
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	708
TseI	GCWGC	1 cut(s)	727
TspDTI	ATGAA	7 cut(s)	74, 105, 251, 477, 510, 630, 684
TspRI	CASTG	1 cut(s)	708
Vha464I	CTTAAG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	3 cut(s)	163, 314, 497
XmiI	GTMKAC	1 cut(s)	569
XspI	CTAG	2 cut(s)	296, 573
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.