Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005568

Physical Location & Seq

Genomic Coordinates Reverse (-)

55198605 .. 55207114

Gene Structure 8510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00260880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1737 bp

ATGGCGGAGACTAAGTACAAGTACCTGATTGAGGTCGAGAAGGGAAAGGCGGCCAAGGACGGCCGGCCGTCGCTCGGTCCGGTTTACCGGAGCCTATTCGCCAAAGACGGCTTTCCGCAGCCGATTGCCGGAATGGACAGTTGCTGGGATGTTTTCCGCATGTCGGTGGAGAAAAATCCCGGAAACCGAATGCTTGGTCGTCGTGAGACTGTGAATGGGAAGGGTGGTAAATATGTGTGGTTAACTTACAAACAAGTCTATGATGTGGTAGTGAAAGTTGGAAATTCCATGCGCACTCTTGGATTGGCAGAAGGAGATAAATGTGGTATATTTGGTGCCAATTGTCCAGAATGGATTATGAGCATGGAGGCGTGCAATGCTCATGGGCTCTATTGTGTTCCTTTATATGACACTCTAGGTGCTGGTGCTGTGGAATTTATCATATGCCATGCTGAAGTTTCACTTGCTTTTGTAGAAGAAAAAAAGATATCTGAGCTGTTGAAGACATTGCCCAACGCATCAAAATATCTTAAGACACTTGTAAGCTTTGGCAAGGTTACCCCTGAACAAAAGGAATCAGTTGAAAAGCATGGATCTGTGATATATTCATGGAATGAATTTCTGCAACTGGGAGATAAAGACTTTGATCTTCCAGTAAAAAAGAAAAGTGATATCTGTACTATAATGTATACTAGTGGAACAACTGGTGACCCCAAGGGTGTACTGATATCCAATGAAAGCATCATTACTCTACTGGCTGGGGTGAAACGCCTGCTGGAGAGTGTAAATGAAGAGGATGTCAAATTGTTAACTGAAGACATTGCGGAGCTAAAACCAACTATTTTTTGTGCTGTTCCTCGCGTTTTAGATAGAATCTACGCAGGTAAAGGAAGGATTGGGGGTAGGGTGCGGCTTATTTTGTCTGGAGCTGCTCCTCTTTCTACTCATGTGGAATCTTACTTACGTGTGGTGGCATGCGCTCATGTTTTACAAGGATATGGTCTGACAGAAACTTGTGCTGGGACATTTGTATCGCTACCAAATGAATTGTCAATGCTTGGCACAGTGGGTCCTCCGGTTCCAAATGTGGATGTATGTCTGGAATCTGTTCCTGAAATGGGATACGACGCTCTGTCAGATACACCTCGTGGAGAAGTTGGTATACTTATCTATTTGTTAGTAAGTTATGGCTCTTATATCATTAAGTGGAAAATAATCAGCTGTGCCCATAATTATCTTGCATCAGGGGATATTGGTGAGTGGCAACAAGATGGAAGCCTTAAAATCATTGATCGCAAGAAGAATATCTTCAAGCTTTCACAAGGAGAATATGTTGCAGTTGAAAACTTGGAGAATATTTATGGACTTGTTTCAGATATTGATGCGATATGGGTTTATGGGAACAGCTTTGAGTCCTGCCTAGTTGCAATAGTCACTCCCAACAAGCAAGCAATTGAAAGATGGGCTCAACAAAATGATGTATCTGGTGACTTCAATTCTCTTTGTGAAAATACAAAGGTGAAAGAATATGTGCTTGGAGAGCTGAATAAGATTGCTAAAGACAAAAAGTTGAAAGGTTTTGAGGTTATAAAAGCAGCTCACCTCGACCCAGAGCCGTTCGACATGGAGCGTGACCTTATCACTCCAACATACAAGAAAAAGAGGCCCCAGTTGCTTAAATACTACAAGGGCGTCATTGATAACATGTACAAGAGTGTAAATCAGCCCAAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

578

Amino Acids

64.04

Weight (kDa)

6.69

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	67 - 267	2e-38	AMP-binding enzyme
AMP-binding	PF00501	263 - 386	2.3e-21	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64400 AT4G11030 AT4G23850
fragaria_vesca	FvH4_5g04520 FvH4_5g04520 FvH4_5g04520
malus_domestica	MD02G1279200.v1.1 MD06G1106100.v1.1 MD14G1128200.v1.1
prunus_persica	Prupe.5G118400_v2.0.a1 Prupe.5G118400_v2.0.a1
pyrus_communis	pycom06g10040
rosa_chinensis	RchiOBHm_Chr7g0179891 RchiOBHm_Chr7g0194931
rosa_laevigata	RLG00000004156
rosa_multiflora	Rmu_sc0008218.1_g000002 Rmu_sc0010214.1_g000001 Rmu_ssc0000157.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260880
rosa_rugosa	Rorug04G0299500 Rorug07G0019100 Rorug07G0019200
rosa_samantha	Rh1DG084200 Rh7AG146900 Rh7BG147600 Rh7CG151000 Rh7DG148100
rosa_wichuraiana	Rw7G012540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1589
Acc16I	TGCGCA	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	872
AccB1I	GGYRCC	1 cut(s)	335
AccI	GTMKAC	2 cut(s)	689, 1162
AccII	CGCG	1 cut(s)	861
AciI	CCGC	6 cut(s)	5, 50, 116, 157, 824, 910
AclWI	GGATC	1 cut(s)	601
AcoI	YGGCCR	3 cut(s)	51, 61, 65
AcsI	RAATTY	3 cut(s)	283, 434, 617
AcuI	CTGAAG	2 cut(s)	474, 834
AcyI	GRCGYC	1 cut(s)	1692
AdeI	CACNNNGTG	1 cut(s)	1148
AfaI	GTAC	5 cut(s)	17, 23, 679, 723, 1709
AfiI	CCNNNNNNNGG	5 cut(s)	31, 74, 128, 163, 1118
AflII	CTTAAG	1 cut(s)	530
AflIII	ACRYGT	2 cut(s)	964, 1704
AgsI	TTSAA	7 cut(s)	502, 584, 1312, 1343, 1457, 1495, 1573
AhdI	GACNNNNNGTC	1 cut(s)	1132
AhlI	ACTAGT	1 cut(s)	692
AjuI	GAANNNNNNNTTGG	2 cut(s)	1518, 1550
AluBI	AGCT	9 cut(s)	496, 546, 829, 929, 1221, 1315, 1407, 1543, 1598
AluI	AGCT	9 cut(s)	496, 546, 829, 929, 1221, 1315, 1407, 1543, 1598
Alw26I	GTCTC	2 cut(s)	2, 200
AlwI	GGATC	1 cut(s)	601
AlwNI	CAGNNNCTG	1 cut(s)	144
AoxI	GGCC	5 cut(s)	51, 61, 65, 1664, 1731
ApeKI	GCWGC	3 cut(s)	118, 929, 1595
ApoI	RAATTY	3 cut(s)	283, 434, 617
ArsI	GACNNNNNNTTYG	4 cut(s)	181, 213, 1034, 1066
Asp700I	GAANNNNTTC	2 cut(s)	1107, 1307
AspLEI	GCGC	2 cut(s)	294, 980
AspS9I	GGNCC	3 cut(s)	77, 1070, 1665
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	6 cut(s)	719, 775, 1268, 1499, 1531, 1592
AvaII	GGWCC	2 cut(s)	77, 1070
BaeGI	GKGCMC	1 cut(s)	1228
BaeI	ACNNNNGTAYC	2 cut(s)	1014, 1047
BanI	GGYRCC	1 cut(s)	335
BanII	GRGCYC	2 cut(s)	390, 1468
BarI	GAAGNNNNNNTAC	2 cut(s)	1146, 1178
BauI	CACGAG	1 cut(s)	1146
BbsI	GAAGAC	2 cut(s)	509, 822
BbvI	GCAGC	3 cut(s)	130, 916, 1607
BccI	CCATC	2 cut(s)	1265, 1455
BceAI	ACGGC	4 cut(s)	52, 76, 124, 1600
BciVI	GTATCC	1 cut(s)	1115
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	2 cut(s)	2, 200
BcuI	ACTAGT	1 cut(s)	692
BfaI	CTAG	3 cut(s)	416, 693, 1421
BfrI	CTTAAG	1 cut(s)	530
BfuAI	ACCTGC	1 cut(s)	872
BfuI	GTATCC	1 cut(s)	1115
BisI	GCNGC	5 cut(s)	51, 119, 911, 930, 1596
BlsI	GCNGC	5 cut(s)	52, 120, 912, 931, 1597
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	2 cut(s)	77, 1070
BmeRI	GACNNNNNGTC	1 cut(s)	1132
BmgT120I	GGNCC	3 cut(s)	77, 1070, 1665
BmiI	GGNNCC	5 cut(s)	92, 337, 1071, 1080, 1667
BmrFI	CCNGG	1 cut(s)	180
BmrI	ACTGGG	2 cut(s)	638, 1663
BmsI	GCATC	4 cut(s)	527, 750, 1250, 1372
BmuI	ACTGGG	2 cut(s)	638, 1663
BpiI	GAAGAC	2 cut(s)	509, 822
BpmI	CTGGAG	2 cut(s)	797, 945
BpuMI	CCSGG	1 cut(s)	180
BsaAI	YACGTR	1 cut(s)	965
BsaHI	GRCGYC	1 cut(s)	1692
BsaJI	CCNNGG	3 cut(s)	54, 714, 1728
BsaWI	WCCGGW	3 cut(s)	79, 87, 1075
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 1317, 1347
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 74, 128, 163, 1118
Bse118I	RCCGGY	1 cut(s)	63
Bse1I	ACTGG	5 cut(s)	633, 653, 709, 759, 1669
Bse3DI	GCAATG	3 cut(s)	382, 506, 819
BseDI	CCNNGG	3 cut(s)	54, 714, 1728
BseGI	GGATG	3 cut(s)	154, 802, 1096
BseLI	CCNNNNNNNGG	5 cut(s)	31, 74, 128, 163, 1118
BseMI	GCAATG	3 cut(s)	382, 506, 819
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	5 cut(s)	633, 653, 709, 759, 1669
BseRI	GAGGAG	1 cut(s)	924
BseSI	GKGCMC	1 cut(s)	1228
BseX3I	CGGCCG	2 cut(s)	61, 65
BseXI	GCAGC	3 cut(s)	130, 916, 1607
BseYI	CCCAGC	3 cut(s)	144, 758, 1019
Bsh1236I	CGCG	1 cut(s)	861
Bsh1285I	CGRYCG	2 cut(s)	64, 68
BshFI	GGCC	5 cut(s)	53, 63, 67, 1666, 1733
BshNI	GGYRCC	1 cut(s)	335
BsiEI	CGRYCG	2 cut(s)	64, 68
BsiSI	CCGG	6 cut(s)	64, 80, 88, 129, 180, 1076
BslFI	GGGAC	1 cut(s)	1036
BslI	CCNNNNNNNGG	5 cut(s)	31, 74, 128, 163, 1118
BsmAI	GTCTC	2 cut(s)	2, 200
BsmFI	GGGAC	1 cut(s)	1036
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	5 cut(s)	53, 63, 67, 1666, 1733
Bsp1286I	GDGCHC	3 cut(s)	390, 1228, 1468
Bsp1407I	TGTACA	1 cut(s)	1707
Bsp143I	GATC	3 cut(s)	593, 646, 1291
BspACI	CCGC	6 cut(s)	5, 50, 116, 157, 824, 910
BspANI	GGCC	5 cut(s)	53, 63, 67, 1666, 1733
BspCNI	CTCAG	1 cut(s)	484
BspFNI	CGCG	1 cut(s)	861
BspLI	GGNNCC	5 cut(s)	92, 337, 1071, 1080, 1667
BspMI	ACCTGC	1 cut(s)	872
BspPI	GGATC	1 cut(s)	601
BspT107I	GGYRCC	1 cut(s)	335
BspTI	CTTAAG	1 cut(s)	530
BsrDI	GCAATG	3 cut(s)	382, 506, 819
BsrFI	RCCGGY	1 cut(s)	63
BsrGI	TGTACA	1 cut(s)	1707
BsrI	ACTGG	5 cut(s)	633, 653, 709, 759, 1669
BssAI	RCCGGY	1 cut(s)	63
BssECI	CCNNGG	3 cut(s)	54, 714, 1728
BssMI	GATC	3 cut(s)	593, 646, 1291
BssNAI	GTATAC	2 cut(s)	690, 1163
BssNI	GRCGYC	1 cut(s)	1692
BssSI	CACGAG	1 cut(s)	1146
BssT1I	CCWWGG	3 cut(s)	54, 714, 1728
Bst1107I	GTATAC	2 cut(s)	690, 1163
Bst2BI	CACGAG	1 cut(s)	1146
Bst4CI	ACNGT	3 cut(s)	140, 211, 1066
Bst6I	CTCTTC	1 cut(s)	786
BstACI	GRCGYC	1 cut(s)	1692
BstAFI	CTTAAG	1 cut(s)	530
BstAUI	TGTACA	1 cut(s)	1707
BstBAI	YACGTR	1 cut(s)	965
BstC8I	GCNNGC	5 cut(s)	65, 373, 773, 976, 1449
BstDEI	CTNAG	2 cut(s)	12, 492
BstEII	GGTNACC	2 cut(s)	556, 707
BstENI	CCTNNNNNAGG	1 cut(s)	29
BstF5I	GGATG	3 cut(s)	154, 802, 1096
BstFNI	CGCG	1 cut(s)	861
BstHHI	GCGC	2 cut(s)	294, 980
BstKTI	GATC	3 cut(s)	596, 649, 1294
BstMAI	GTCTC	2 cut(s)	2, 200
BstMBI	GATC	3 cut(s)	593, 646, 1291
BstMCI	CGRYCG	2 cut(s)	64, 68
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 1540, 1672
BstNSI	RCATGY	3 cut(s)	163, 978, 1708
BstPI	GGTNACC	2 cut(s)	556, 707
BstSCI	CCNGG	1 cut(s)	178
BstSLI	GKGCMC	1 cut(s)	1228
BstUI	CGCG	1 cut(s)	861
BstV1I	GCAGC	3 cut(s)	130, 916, 1607
BstV2I	GAAGAC	2 cut(s)	509, 822
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
BstZ17I	GTATAC	2 cut(s)	690, 1163
BstZI	CGGCCG	2 cut(s)	61, 65
BsuI	GTATCC	1 cut(s)	1115
BsuRI	GGCC	5 cut(s)	53, 63, 67, 1666, 1733
BtsCI	GGATG	3 cut(s)	154, 802, 1096
BtsIMutI	CAGTG	1 cut(s)	1071
BveI	ACCTGC	1 cut(s)	872
Cac8I	GCNNGC	5 cut(s)	65, 373, 773, 976, 1449
CaiI	CAGNNNCTG	1 cut(s)	144
CfoI	GCGC	2 cut(s)	294, 980
Cfr10I	RCCGGY	1 cut(s)	63
Cfr13I	GGNCC	3 cut(s)	77, 1070, 1665
CpoI	CGGWCCG	1 cut(s)	77
CseI	GACGC	2 cut(s)	1136, 1681
Csp6I	GTAC	5 cut(s)	16, 22, 678, 722, 1708
CspI	CGGWCCG	1 cut(s)	77
CviQI	GTAC	5 cut(s)	16, 22, 678, 722, 1708
DdeI	CTNAG	2 cut(s)	12, 492
DpnI	GATC	3 cut(s)	595, 648, 1293
DpnII	GATC	3 cut(s)	593, 646, 1291
DraIII	CACNNNGTG	1 cut(s)	1148
DriI	GACNNNNNGTC	1 cut(s)	1132
EaeI	YGGCCR	3 cut(s)	51, 61, 65
EagI	CGGCCG	2 cut(s)	61, 65
Eam1104I	CTCTTC	1 cut(s)	786
Eam1105I	GACNNNNNGTC	1 cut(s)	1132
EarI	CTCTTC	1 cut(s)	786
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	2 cut(s)	61, 65
Eco130I	CCWWGG	3 cut(s)	54, 714, 1728
Eco147I	AGGCCT	1 cut(s)	1733
Eco24I	GRGCYC	2 cut(s)	390, 1468
Eco32I	GATATC	3 cut(s)	489, 673, 729
Eco47I	GGWCC	2 cut(s)	77, 1070
Eco52I	CGGCCG	2 cut(s)	61, 65
Eco57I	CTGAAG	2 cut(s)	474, 834
Eco91I	GGTNACC	2 cut(s)	556, 707
EcoNI	CCTNNNNNAGG	1 cut(s)	29
EcoO109I	RGGNCCY	2 cut(s)	1070, 1665
EcoO65I	GGTNACC	2 cut(s)	556, 707
EcoRV	GATATC	3 cut(s)	489, 673, 729
EcoT14I	CCWWGG	3 cut(s)	54, 714, 1728
EcoT38I	GRGCYC	2 cut(s)	390, 1468
ErhI	CCWWGG	3 cut(s)	54, 714, 1728
FalI	AAGNNNNNCTT	4 cut(s)	447, 479, 1292, 1324
FaqI	GGGAC	1 cut(s)	1036
FauNDI	CATATG	1 cut(s)	443
FblI	GTMKAC	2 cut(s)	689, 1162
Fnu4HI	GCNGC	5 cut(s)	51, 119, 911, 930, 1596
FokI	GGATG	3 cut(s)	161, 809, 1103
FriOI	GRGCYC	2 cut(s)	390, 1468
FseI	GGCCGGCC	1 cut(s)	67
Fsp4HI	GCNGC	5 cut(s)	51, 119, 911, 930, 1596
FspAI	RTGCGCAY	1 cut(s)	293
FspBI	CTAG	3 cut(s)	416, 693, 1421
FspI	TGCGCA	1 cut(s)	293
GlaI	GCGC	2 cut(s)	293, 979
GluI	GCNGC	5 cut(s)	51, 119, 911, 930, 1596
GsaI	CCCAGC	3 cut(s)	148, 762, 1023
GsuI	CTGGAG	2 cut(s)	797, 945
HaeIII	GGCC	5 cut(s)	53, 63, 67, 1666, 1733
HapII	CCGG	6 cut(s)	64, 80, 88, 129, 180, 1076
HgaI	GACGC	2 cut(s)	1136, 1681
HhaI	GCGC	2 cut(s)	294, 980
Hin1I	GRCGYC	1 cut(s)	1692
Hin6I	GCGC	2 cut(s)	292, 978
HinP1I	GCGC	2 cut(s)	292, 978
HincII	GTYRAC	2 cut(s)	243, 810
HindII	GTYRAC	2 cut(s)	243, 810
HindIII	AAGCTT	2 cut(s)	544, 1313
HinfI	GANTC	5 cut(s)	575, 873, 953, 1103, 1412
HpaI	GTTAAC	2 cut(s)	243, 810
HpaII	CCGG	6 cut(s)	64, 80, 88, 129, 180, 1076
HphI	GGTGA	6 cut(s)	719, 775, 1268, 1499, 1531, 1592
Hpy166II	GTNNAC	6 cut(s)	85, 243, 690, 722, 810, 1163
Hpy188I	TCNGA	4 cut(s)	493, 1005, 1138, 1375
Hpy188III	TCNNGA	6 cut(s)	37, 203, 347, 924, 1100, 1112
Hpy8I	GTNNAC	6 cut(s)	85, 243, 690, 722, 810, 1163
Hpy99I	CGWCG	3 cut(s)	73, 204, 1130
HpyAV	CCTTC	4 cut(s)	34, 214, 305, 885
HpyCH4III	ACNGT	3 cut(s)	140, 211, 1066
HpyCH4IV	ACGT	1 cut(s)	964
HpyCH4V	TGCA	5 cut(s)	375, 625, 1241, 1337, 1427
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 1540, 1672
HpyF3I	CTNAG	2 cut(s)	12, 492
HpySE526I	ACGT	1 cut(s)	964
Hsp92I	GRCGYC	1 cut(s)	1692
HspAI	GCGC	2 cut(s)	292, 978
KroI	GCCGGC	1 cut(s)	63
KroNI	GCCGGC	1 cut(s)	65
KspAI	GTTAAC	2 cut(s)	243, 810
Kzo9I	GATC	3 cut(s)	593, 646, 1291
LmnI	GCTCC	5 cut(s)	90, 826, 926, 937, 1627
Lsp1109I	GCAGC	3 cut(s)	130, 916, 1607
LweI	GCATC	4 cut(s)	527, 750, 1250, 1372
MaeI	CTAG	3 cut(s)	416, 693, 1421
MaeII	ACGT	1 cut(s)	964
MaeIII	GTNAC	5 cut(s)	556, 707, 1432, 1487, 1631
MalI	GATC	3 cut(s)	595, 648, 1293
MboI	GATC	3 cut(s)	593, 646, 1291
MboII	GAAGA	7 cut(s)	488, 514, 641, 803, 827, 1300, 1312
MfeI	CAATTG	2 cut(s)	340, 1452
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	3 cut(s)	390, 1228, 1468
MluCI	AATT	9 cut(s)	283, 340, 434, 617, 803, 1046, 1231, 1452, 1495
MlyI	GAGTC	1 cut(s)	1421
MmeI	TCCRAC	2 cut(s)	259, 1670
MroNI	GCCGGC	1 cut(s)	63
MroXI	GAANNNNTTC	2 cut(s)	1107, 1307
MseI	TTAA	6 cut(s)	242, 531, 809, 1203, 1281, 1677
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	1221
MspCI	CTTAAG	1 cut(s)	530
MspI	CCGG	6 cut(s)	64, 80, 88, 129, 180, 1076
MspR9I	CCNGG	1 cut(s)	180
MunI	CAATTG	2 cut(s)	340, 1452
Mva1269I	GAATGC	1 cut(s)	195
MvnI	CGCG	1 cut(s)	861
MwoI	GCNNNNNNNGC	3 cut(s)	377, 1540, 1672
NaeI	GCCGGC	1 cut(s)	65
NciI	CCSGG	1 cut(s)	180
NdeI	CATATG	1 cut(s)	443
NdeII	GATC	3 cut(s)	593, 646, 1291
NgoMIV	GCCGGC	1 cut(s)	63
NlaIV	GGNNCC	5 cut(s)	92, 337, 1071, 1080, 1667
NmuCI	GTSAC	4 cut(s)	707, 1432, 1487, 1631
NsbI	TGCGCA	1 cut(s)	293
NspI	RCATGY	3 cut(s)	163, 978, 1708
PaeI	GCATGC	1 cut(s)	978
PceI	AGGCCT	1 cut(s)	1733
PciI	ACATGT	1 cut(s)	1704
PctI	GAATGC	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	65
PdmI	GAANNNNTTC	2 cut(s)	1107, 1307
PfeI	GAWTC	4 cut(s)	575, 873, 953, 1103
PfoI	TCCNGGA	1 cut(s)	178
PkrI	GCNGC	5 cut(s)	52, 120, 912, 931, 1597
PleI	GAGTC	1 cut(s)	1420
PpsI	GAGTC	1 cut(s)	1420
Ppu21I	YACGTR	1 cut(s)	965
PpuMI	RGGWCCY	1 cut(s)	1070
PscI	ACATGT	1 cut(s)	1704
PsiI	TTATAA	1 cut(s)	1589
Psp5II	RGGWCCY	1 cut(s)	1070
PspEI	GGTNACC	2 cut(s)	556, 707
PspFI	CCCAGC	3 cut(s)	144, 758, 1019
PspN4I	GGNNCC	5 cut(s)	92, 337, 1071, 1080, 1667
PspPI	GGNCC	3 cut(s)	77, 1070, 1665
PspPPI	RGGWCCY	1 cut(s)	1070
PstNI	CAGNNNCTG	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	593
PvuII	CAGCTG	1 cut(s)	1221
RigI	GGCCGGCC	1 cut(s)	67
RsaI	GTAC	5 cut(s)	17, 23, 679, 723, 1709
RsaNI	GTAC	5 cut(s)	16, 22, 678, 722, 1708
RseI	CAYNNNNRTG	1 cut(s)	164
Rsr2I	CGGWCCG	1 cut(s)	77
RsrII	CGGWCCG	1 cut(s)	77
SaqAI	TTAA	6 cut(s)	242, 531, 809, 1203, 1281, 1677
SatI	GCNGC	5 cut(s)	51, 119, 911, 930, 1596
Sau3AI	GATC	3 cut(s)	593, 646, 1291
Sau96I	GGNCC	3 cut(s)	77, 1070, 1665
SchI	GAGTC	1 cut(s)	1421
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	3 cut(s)	390, 1228, 1468
SfaNI	GCATC	4 cut(s)	527, 750, 1250, 1372
SinI	GGWCC	2 cut(s)	77, 1070
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
SpeI	ACTAGT	1 cut(s)	692
SphI	GCATGC	1 cut(s)	978
Sse9I	AATT	9 cut(s)	283, 340, 434, 617, 803, 1046, 1231, 1452, 1495
SseBI	AGGCCT	1 cut(s)	1733
SsiI	CCGC	6 cut(s)	5, 50, 116, 157, 824, 910
SspI	AATATT	1 cut(s)	1357
SspMI	CTAG	3 cut(s)	416, 693, 1421
StuI	AGGCCT	1 cut(s)	1733
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	3 cut(s)	54, 714, 1728
TaaI	ACNGT	3 cut(s)	140, 211, 1066
TaiI	ACGT	1 cut(s)	967
TaqI	TCGA	3 cut(s)	36, 1605, 1620
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	9 cut(s)	283, 340, 434, 617, 803, 1046, 1231, 1452, 1495
TatI	WGTACW	4 cut(s)	15, 677, 721, 1707
TauI	GCSGC	2 cut(s)	53, 913
TfiI	GAWTC	4 cut(s)	575, 873, 953, 1103
Tru1I	TTAA	6 cut(s)	242, 531, 809, 1203, 1281, 1677
Tru9I	TTAA	6 cut(s)	242, 531, 809, 1203, 1281, 1677
TscAI	CASTG	1 cut(s)	1071
TseFI	GTSAC	4 cut(s)	707, 1432, 1487, 1631
TseI	GCWGC	3 cut(s)	118, 929, 1595
Tsp45I	GTSAC	4 cut(s)	707, 1432, 1487, 1631
TspDTI	ATGAA	5 cut(s)	597, 630, 750, 804, 1059
TspRI	CASTG	1 cut(s)	1071
Vha464I	CTTAAG	1 cut(s)	530
VpaK11BI	GGWCC	2 cut(s)	77, 1070
XagI	CCTNNNNNAGG	1 cut(s)	29
XapI	RAATTY	3 cut(s)	283, 434, 617
XceI	RCATGY	3 cut(s)	163, 978, 1708
XmiI	GTMKAC	2 cut(s)	689, 1162
XmnI	GAANNNNTTC	2 cut(s)	1107, 1307
XspI	CTAG	3 cut(s)	416, 693, 1421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.