Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005568

Physical Location & Seq

Genomic Coordinates Reverse (-)

1467382 .. 1468471

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0019200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTGATAGGCGGGGAAGTTGAAATTGAATGGGCTCTGAAGCACAAAGGGATAACCTACGAGTACATAGAAGAAGACTTGAGAAACAAGAGTACCCTGCTCCTCAAGTCAAACCCTGTCCATAAGAAAATCCCAGTGCTTCTGCACGGTGATAAACCAGTTGCAGAGTCCCTTATCATCCTTGAGTATATAGATGAAACATGGAGGGAGAACCCTCTAATGCCAGATGATCCTTCTGAAAAAGCAATGGTGCGATTTTGGGCAAAATATGTTGACGAGAAGTGTGTGATCAGTGCATGGACTGCTAGCCGTACAAAAGGCCATGAACAAGAGAAAGCAATAGAGTCAACACAAGAATCACTCAAACTTCTGAATAAGCTCATTGAAGGCAAGACCTTTTTTGGAGGAGAAACCATGGGTTTCCTAGACTTAGTGGTGGGATCTTTACCTAACTGGATCAAATTCATAGAAGAATTTGTTGGCATAAAGCTATTTGATACGAAAGAGTTGTCATTTCTTCATGAATGGGCACAGAGATTCACTGAAATTCCAATAATCAAAGAAAGTATTCCAATGAAGGAAGATCTCCTCAATTACTTTCGAGCTCAGCAGAATGCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

207

Amino Acids

24.0

Weight (kDa)

5.38

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	8 - 66	2.2e-16	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 70	1.2e-08	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	10 - 67	2.1e-09	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64400 AT4G11030 AT4G23850
fragaria_vesca	FvH4_5g04520 FvH4_5g04520 FvH4_5g04520
malus_domestica	MD02G1279200.v1.1 MD06G1106100.v1.1 MD14G1128200.v1.1
prunus_persica	Prupe.5G118400_v2.0.a1 Prupe.5G118400_v2.0.a1
pyrus_communis	pycom06g10040
rosa_chinensis	RchiOBHm_Chr7g0179891 RchiOBHm_Chr7g0194931
rosa_laevigata	RLG00000004156
rosa_multiflora	Rmu_sc0008218.1_g000002 Rmu_sc0010214.1_g000001 Rmu_ssc0000157.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260880
rosa_rugosa	Rorug04G0299500 Rorug07G0019100 Rorug07G0019200
rosa_samantha	Rh1DG084200 Rh7AG146900 Rh7BG147600 Rh7CG151000 Rh7DG148100
rosa_wichuraiana	Rw7G012540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	12
AclWI	GGATC	3 cut(s)	224, 448, 464
AcsI	RAATTY	3 cut(s)	461, 473, 546
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	3 cut(s)	65, 94, 313
AgsI	TTSAA	3 cut(s)	23, 29, 386
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
AluBI	AGCT	3 cut(s)	379, 490, 605
AluI	AGCT	3 cut(s)	379, 490, 605
Alw21I	GWGCWC	1 cut(s)	607
AlwI	GGATC	3 cut(s)	224, 448, 464
AoxI	GGCC	1 cut(s)	319
ApoI	RAATTY	3 cut(s)	461, 473, 546
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
Asp700I	GAANNNNTTC	1 cut(s)	567
AsuHPI	GGTGA	2 cut(s)	16, 161
AsuNHI	GCTAGC	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	532
BaeI	ACNNNNGTAYC	2 cut(s)	76, 109
BanII	GRGCYC	2 cut(s)	37, 607
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	607
BceAI	ACGGC	1 cut(s)	294
BclI	TGATCA	1 cut(s)	288
BfaI	CTAG	2 cut(s)	306, 425
BglII	AGATCT	1 cut(s)	583
BlpI	GCTNAGC	1 cut(s)	606
BmrI	ACTGGG	1 cut(s)	128
BmtI	GCTAGC	1 cut(s)	309
BmuI	ACTGGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	606
BpuEI	CTTGAG	3 cut(s)	89, 100, 203
BsaJI	CCNNGG	1 cut(s)	414
Bse1I	ACTGG	3 cut(s)	134, 158, 458
Bse3DI	GCAATG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	620
BseNI	ACTGG	3 cut(s)	134, 158, 458
BseRI	GAGGAG	3 cut(s)	92, 420, 578
BseSI	GKGCMC	1 cut(s)	532
BsgI	GTGCAG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	607
BslFI	GGGAC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	154
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	1 cut(s)	321
Bsp1286I	GDGCHC	3 cut(s)	37, 532, 607
Bsp143I	GATC	5 cut(s)	229, 288, 440, 456, 583
Bsp1720I	GCTNAGC	1 cut(s)	606
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	1 cut(s)	619
BspHI	TCATGA	1 cut(s)	520
BspOI	GCTAGC	1 cut(s)	309
BspPI	GGATC	3 cut(s)	224, 448, 464
BsrDI	GCAATG	1 cut(s)	252
BsrI	ACTGG	3 cut(s)	134, 158, 458
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	5 cut(s)	229, 288, 440, 456, 583
BssT1I	CCWWGG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	430, 606
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	177
BstKTI	GATC	5 cut(s)	232, 291, 443, 459, 586
BstMBI	GATC	5 cut(s)	229, 288, 440, 456, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstSLI	GKGCMC	1 cut(s)	532
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	440, 583
BstYI	RGATCY	2 cut(s)	440, 583
BsuRI	GGCC	1 cut(s)	321
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	3 cut(s)	141, 298, 540
Cac8I	GCNNGC	1 cut(s)	307
CciI	TCATGA	1 cut(s)	520
Csp6I	GTAC	3 cut(s)	64, 93, 312
CviAII	CATG	5 cut(s)	201, 297, 323, 415, 521
CviJI	RGCY	6 cut(s)	35, 309, 321, 379, 490, 605
CviKI_1	RGCY	6 cut(s)	35, 309, 321, 379, 490, 605
CviQI	GTAC	3 cut(s)	64, 93, 312
DdeI	CTNAG	2 cut(s)	430, 606
DpnI	GATC	5 cut(s)	231, 290, 442, 458, 585
DpnII	GATC	5 cut(s)	229, 288, 440, 456, 583
Ecl136II	GAGCTC	1 cut(s)	605
Eco130I	CCWWGG	1 cut(s)	414
Eco24I	GRGCYC	2 cut(s)	37, 607
Eco53kI	GAGCTC	1 cut(s)	605
Eco57I	CTGAAG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	605
EcoT14I	CCWWGG	1 cut(s)	414
EcoT38I	GRGCYC	2 cut(s)	37, 607
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	5 cut(s)	204, 300, 326, 418, 524
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	5 cut(s)	200, 296, 322, 414, 520
FauI	CCCGC	1 cut(s)	5
FbaI	TGATCA	1 cut(s)	288
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	2 cut(s)	37, 607
FspBI	CTAG	2 cut(s)	306, 425
HaeIII	GGCC	1 cut(s)	321
Hin1II	CATG	5 cut(s)	204, 300, 326, 418, 524
HincII	GTYRAC	2 cut(s)	274, 348
HindII	GTYRAC	2 cut(s)	274, 348
HinfI	GANTC	4 cut(s)	167, 344, 356, 537
HphI	GGTGA	2 cut(s)	16, 161
Hpy166II	GTNNAC	2 cut(s)	274, 348
Hpy188I	TCNGA	3 cut(s)	39, 238, 372
Hpy188III	TCNNGA	1 cut(s)	521
Hpy8I	GTNNAC	2 cut(s)	274, 348
HpyAV	CCTTC	3 cut(s)	243, 380, 571
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	3 cut(s)	145, 164, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	2 cut(s)	430, 606
Hsp92II	CATG	5 cut(s)	204, 300, 326, 418, 524
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	5 cut(s)	229, 288, 440, 456, 583
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	6 cut(s)	110, 129, 147, 171, 237, 439
MaeI	CTAG	2 cut(s)	306, 425
MalI	GATC	5 cut(s)	231, 290, 442, 458, 585
MboI	GATC	5 cut(s)	229, 288, 440, 456, 583
MboII	GAAGA	5 cut(s)	83, 86, 482, 509, 593
MflI	RGATCY	2 cut(s)	440, 583
MhlI	GDGCHC	3 cut(s)	37, 532, 607
MluCI	AATT	5 cut(s)	24, 461, 473, 546, 592
MlyI	GAGTC	2 cut(s)	176, 353
MnlI	CCTC	5 cut(s)	113, 198, 225, 398, 599
MroXI	GAANNNNTTC	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	619
MwoI	GCNNNNNNNGC	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	5 cut(s)	229, 288, 440, 456, 583
NheI	GCTAGC	1 cut(s)	305
NlaIII	CATG	5 cut(s)	204, 300, 326, 418, 524
PagI	TCATGA	1 cut(s)	520
PctI	GAATGC	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	2 cut(s)	356, 537
PleI	GAGTC	2 cut(s)	175, 352
PpsI	GAGTC	2 cut(s)	175, 352
Psp124BI	GAGCTC	1 cut(s)	607
PsuI	RGATCY	2 cut(s)	440, 583
RsaI	GTAC	3 cut(s)	65, 94, 313
RsaNI	GTAC	3 cut(s)	64, 93, 312
SacI	GAGCTC	1 cut(s)	607
Sau3AI	GATC	5 cut(s)	229, 288, 440, 456, 583
SchI	GAGTC	2 cut(s)	176, 353
SduI	GDGCHC	3 cut(s)	37, 532, 607
SetI	ASST	6 cut(s)	59, 381, 398, 451, 492, 607
SmlI	CTYRAG	3 cut(s)	79, 104, 182
SmoI	CTYRAG	3 cut(s)	79, 104, 182
Sse9I	AATT	5 cut(s)	24, 461, 473, 546, 592
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	2 cut(s)	306, 425
SstI	GAGCTC	1 cut(s)	607
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	601
TasI	AATT	5 cut(s)	24, 461, 473, 546, 592
TatI	WGTACW	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	356, 537
TscAI	CASTG	3 cut(s)	141, 298, 547
TspDTI	ATGAA	6 cut(s)	210, 339, 454, 509, 537, 590
TspRI	CASTG	3 cut(s)	141, 298, 547
XapI	RAATTY	3 cut(s)	461, 473, 546
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	2 cut(s)	306, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.