Rh4BG364700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0017658
Physical Location & Seq
Reverse (-)
52232897 .. 52234293
1397 bp
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UTR
Exon/CDS
Intron
Rh4BG364700.1

Sequence Viewer

Length: 477 bp
ATGGAGCTGGTATTCTTCACCAGTGTCACTATGCTATGCATTCTTCTCTCTACTTTGCTAACACCTTGTGCTTATTCTCTGCAAATTCAAGTGCAGCCATGGAGTAAAGTAGCTGCCAAGAAAGAAGTTCAAGTCTCTCAGCTCCATGCATTGCCAAGAAAGCTTCAACTCACTGAAATAGAAGCTACTGTTGTAGGACAAGAAGGCCAAGATTCAGCACCTAATCACAAAAAGCAGCCGAAGCAAAATGTTCTAGCTGCAGGTACTAAGCCATTGATCCATAAAGAAGAAGAAGAAGGTGTAGAGGTGAAGCACAGAAGCAGTTCAGGGACATGGCAGGAATGGATGGAGAGCGACGACGAGGACACATCGGCGTTCTTCACAATGGACTATTCCAAAGTCAGAAGACGACGCCCGATACACAACAAGTCCTTGAAGCCAAAGGGCGTTAAAGTTGCAGCAGCAGCAACTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.7

Weight (kDa)

8.87

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017658)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g29280
malus_domestica MD13G1056400.v1.1 MD16G1055300.v1.1
prunus_persica Prupe.1G293600_v2.0.a1
rosa_laevigata RLG00000006445
rosa_roxburghii Rroxscaffold_5G00378480
rosa_rugosa Rorug04G0299500
rosa_samantha Rh4AG354800 Rh4BG364700 Rh4CG378800 Rh4DG358500
rosa_wichuraiana Rw4G031100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 251
AclWI GGATC 1 cut(s) 271
AcsI RAATTY 1 cut(s) 84
AcyI GRCGYC 1 cut(s) 412
AdeI CACNNNGTG 1 cut(s) 68
AfaI GTAC 1 cut(s) 265
AgsI TTSAA 4 cut(s) 89, 131, 167, 436
AluBI AGCT 6 cut(s) 7, 113, 142, 163, 185, 257
AluI AGCT 6 cut(s) 7, 113, 142, 163, 185, 257
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 1 cut(s) 271
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 7 cut(s) 94, 113, 235, 257, 458, 461, 464
ApoI RAATTY 1 cut(s) 84
Asp700I GAANNNNTTC 1 cut(s) 322
AsuHPI GGTGA 2 cut(s) 10, 319
BbsI GAAGAC 1 cut(s) 412
BbvI GCAGC 6 cut(s) 100, 106, 244, 247, 470, 473
BccI CCATC 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 251
BisI GCNGC 7 cut(s) 95, 114, 236, 258, 459, 462, 465
BlsI GCNGC 7 cut(s) 96, 115, 237, 259, 460, 463, 466
BpiI GAAGAC 1 cut(s) 412
BsaHI GRCGYC 1 cut(s) 412
BsaJI CCNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 98
BseGI GGATG 1 cut(s) 351
BseMI GCAATG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 21
BseXI GCAGC 6 cut(s) 100, 106, 244, 247, 470, 473
BsgI GTGCAG 1 cut(s) 113
BshFI GGCC 1 cut(s) 207
BslFI GGGAC 1 cut(s) 343
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 343
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 276
Bsp19I CCATGG 1 cut(s) 98
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 151
BspMAI CTGCAG 1 cut(s) 262
BspMI ACCTGC 1 cut(s) 251
BspPI GGATC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 149
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 1 cut(s) 276
BssNI GRCGYC 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 190
BstACI GRCGYC 1 cut(s) 412
BstDEI CTNAG 2 cut(s) 138, 267
BstDSI CCRYGG 1 cut(s) 98
BstF5I GGATG 1 cut(s) 351
BstKTI GATC 1 cut(s) 279
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 3 cut(s) 160, 241, 464
BstSFI CTRYAG 1 cut(s) 258
BstV1I GCAGC 6 cut(s) 100, 106, 244, 247, 470, 473
BstV2I GAAGAC 1 cut(s) 412
BsuRI GGCC 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 98
BtsCI GGATG 1 cut(s) 351
BtsIMutI CAGTG 2 cut(s) 28, 171
BveI ACCTGC 1 cut(s) 251
CseI GACGC 1 cut(s) 420
Csp6I GTAC 1 cut(s) 264
CviAII CATG 4 cut(s) 99, 146, 333, 474
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 2 cut(s) 138, 267
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
DraIII CACNNNGTG 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 98
EcoT22I ATGCAT 2 cut(s) 41, 151
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 4 cut(s) 102, 149, 336, 477
FaiI YATR 7 cut(s) 32, 37, 100, 147, 282, 334, 475
FaqI GGGAC 1 cut(s) 343
FatI CATG 4 cut(s) 98, 145, 332, 473
Fnu4HI GCNGC 7 cut(s) 95, 114, 236, 258, 459, 462, 465
FokI GGATG 1 cut(s) 358
Fsp4HI GCNGC 7 cut(s) 95, 114, 236, 258, 459, 462, 465
FspBI CTAG 1 cut(s) 254
GluI GCNGC 7 cut(s) 95, 114, 236, 258, 459, 462, 465
HaeIII GGCC 1 cut(s) 207
HgaI GACGC 1 cut(s) 420
Hin1I GRCGYC 1 cut(s) 412
Hin1II CATG 4 cut(s) 102, 149, 336, 477
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 212
HphI GGTGA 2 cut(s) 10, 319
Hpy188I TCNGA 1 cut(s) 404
Hpy99I CGWCG 3 cut(s) 359, 362, 414
HpyAV CCTTC 2 cut(s) 197, 290
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 6 cut(s) 39, 82, 94, 149, 260, 458
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 241, 464
HpyF3I CTNAG 2 cut(s) 138, 267
Hsp92I GRCGYC 1 cut(s) 412
Hsp92II CATG 4 cut(s) 102, 149, 336, 477
Kzo9I GATC 1 cut(s) 276
LmnI GCTCC 2 cut(s) 4, 147
LpnPI CCDG 4 cut(s) 34, 246, 312, 323
Lsp1109I GCAGC 6 cut(s) 100, 106, 244, 247, 470, 473
MaeI CTAG 1 cut(s) 254
MaeIII GTNAC 1 cut(s) 25
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 7 cut(s) 7, 35, 299, 302, 305, 370, 417
MluCI AATT 1 cut(s) 84
MnlI CCTC 2 cut(s) 298, 355
Mph1103I ATGCAT 2 cut(s) 41, 151
MroXI GAANNNNTTC 1 cut(s) 322
MseI TTAA 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 39
MwoI GCNNNNNNNGC 3 cut(s) 160, 241, 464
NcoI CCATGG 1 cut(s) 98
NdeII GATC 1 cut(s) 276
NlaIII CATG 4 cut(s) 102, 149, 336, 477
NmuCI GTSAC 1 cut(s) 25
NsiI ATGCAT 2 cut(s) 41, 151
PctI GAATGC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 322
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 7 cut(s) 96, 115, 237, 259, 460, 463, 466
PstI CTGCAG 1 cut(s) 262
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 7 cut(s) 95, 114, 236, 258, 459, 462, 465
Sau3AI GATC 1 cut(s) 276
SfcI CTRYAG 1 cut(s) 258
Sse9I AATT 1 cut(s) 84
SspMI CTAG 1 cut(s) 254
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 190
TasI AATT 1 cut(s) 84
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 2 cut(s) 28, 178
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 7 cut(s) 94, 113, 235, 257, 458, 461, 464
Tsp45I GTSAC 1 cut(s) 25
TspRI CASTG 2 cut(s) 28, 178
XapI RAATTY 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 322
XspI CTAG 1 cut(s) 254
Zsp2I ATGCAT 2 cut(s) 41, 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.