Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0016002

Physical Location & Seq

Genomic Coordinates Forward (+)

5780891 .. 5784408

Gene Structure 3518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1082700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2334 bp

ATGGACTCGACGACGATTTCACATCTTTCACACGGATCGATTTCGTCGAGCATTGGAGACTCGTGGGAGCTTGAAGGCAATCTTCCGCTCAAAGATCGCCTCAAGGCCTTTAAAACCAACCAGTTCGACCCCAACGTCTACGTCACCACCAAATGTCATACCATGAGTGAGAAGGAAATAAAGCACCTCCACTCTTACCTTGTTGACCTGAAGAAGGCGTCTGCAGAGGAAATGCGTAAAAGTGTTTACGCTAATTATCCGGCATTTATCCGTACATCGAGGGAAATCACTGAACTTGAGGGACAACTCCTTTCCATGAGAAATCTCCTCTCTAGTCAGGCAACTTTAGTTCACGGTTTATCTGATGGAACTCGAGTTGATTCATTGTCCACTGGCAACGAAGATTTAAATGACGAGGACATATTAGTAGAAAGTAAGGAACTTTCTGAGATTGAGAACTGGTCAGGAGAATTCGAGGACACCCTCGAGGTTCTATTGGCCGAAAGAAGAGTGGATGAAGCGTTAACTGCCTTGGACGAAGGTGAACGCATAGTGCAACAAGCTAAGGACAGGAATAAATTAACCTCAGCTGCATTCTTGTCACTGCAGACTACCATCACTGAACAGAGGCAAAAATTGATGGATCAGCTGGCAGAGACAATGAGTCAACCTTCCACGCGTATCGTTGAGCTTCGCCCAGCTGTTCTAGCTCTCAAAAAGCTCGGGGATGGTCCCCGTTCACACACGTTGCTGCTCAATGCTCACCATCAAAAGTTGAAGTCTAATATGCAAGGTCTTAGCTTATCTAGCACTTCATATGGCGGAGCATATATCGCTGCGCTTTCTCAACTGGTCTTCTCAAGCATTGCGCAAGCGGCAAGTGACTCCCTGGCAGTTTTCAGTGAGGAGCCCGCTTATACATCTGAACTTGTCACTTGGGCAGTCAAACAGACCGAGGCTTTTGCTCAGCTCCTAAAAAGGCATGTTCTGGCTTCATCAGCAGCTGCCGGGAGTCTAAGAGTTGCCGCAGAGTGTGTTCATATATGCTTGGGACACTGTTCGCTATTAGAAGATCGCGGGTTGTGCCTCTCTCCTGTCTTATTGAAACATTTCAGGCCAGTCCTTGAGCAGGCATTGTACTCCAACTTGAAAAGAATTGAACAGAGCAGTGCTGCATTAGCTGCTGCTGATGATTGGATGCTTCTTTATCCACCGGTAGGCTCACGCCTTATGGGTTCGACTTCATCTCTTACTACTATGAGCCAAAACCAGCCAAAGCTTTCAAGCAGTGCTCACAGATTCAATTCAATGGTTCAGGAACTTCTCGAGGATATGGTGCCGCTTGAGACCCTGCAGTTGGATGGTCCGGCATTAGAAGGCATTTTACAAGCGTTTAACTCGTATGTAACTATATTGATGAATGCAGTGCCTGGTTCAGCGGAGACTGAAGAGAACTTGGAAGGATCAAGACATAAACTTGTTAGGATGGCGGAGACAGAAGCTCAACAGCTAGCTTTGCTAGCAAACGCATCATTGCTAGCAGACGAGCTGCTACCACGAGCTGCTATGAAGCTTTTGCCCCTACAGCAGGGTCAGCAGGCTAATAGACCAATGGAAACCCCTAAAAGATCTTCGGACAGGGGAAATCGTGTCCCGGAACCTAGCAGGGAATGGAAGAGGAGGCTTCAACGCTCGGTCGAGCAGTTGAGAGACAGCTTCTGCAGACTACATGCCCTTGATCTCATCTTCACTGAAGATGGGGACACGCGCCTTAACGCGCAAATGTACACCAGCATGGACGGAAACCTAGACCCCGAATGGTTCCCATCTCCGATACTTCAGGAACTTTTCACAAAATTGACAACCTTGGCGAACCTTGCAACGGATATTTTTGTAGGGAGGGAAAGGTTTGCGACTATCCTGCTAATGAGACTGACTGAGACTGTGATCTTGTGGCTTTCAGATGATCAGAACTTCTGGGCAGAAATTGAAGGGCCAAATCCATTAGGCCCTCTCGGCCTTCAACAGTTCTATTTGGATATGGAGTTTGTGTTGCTTTTCACATCGCAAGGCCGGTACCTTTCTCGGAATCTGCATCAAGTTATAAAGAACATCATTGCTCGAGCCATCGATGCAGTGACTGCTACCGGAATAGATCCATACAGTGTTTTGCCGGAGGACGACTGGTTTGCCGAAGTAGCTCAAATAGCAATAAAGATGCTGACAGGGAAGGCCAACTTCTCGAATGTGGAACAAGACGTTACGAGCCCCAATCAATCTGCAAGATCTTCTCATGGAAGTGAGACCGGTTTTTCTCAGCACTACAGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001927 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0008104 GO:0008150 GO:0009987 GO:0016043 GO:0016192 GO:0022406 GO:0022607 GO:0031503 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0034622 GO:0034629 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0046903 GO:0048278 GO:0051179 GO:0051234 GO:0051601 GO:0051640 GO:0051641 GO:0065003 GO:0070727 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo84_C Vps51

Protein Analysis

778

Amino Acids

86.44

Weight (kDa)

5.25

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VPS51_Exo84_N	PF08700	38 - 114	7.6e-13	Vps51/EXO84/COG1 N-terminal
Exo84_C	PF16528	156 - 361	1.8e-20	Exocyst component 84 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10385
fragaria_vesca	FvH4_4g35500
malus_domestica	MD13G1082700.v1.1
prunus_persica	Prupe.1G264200_v2.0.a1
pyrus_communis	pycom13g07130
rosa_chinensis	RchiOBHm_Chr4g0445151
rosa_laevigata	RLG00000005763
rosa_multiflora	Rmu_sc0000050.1_g000042
rosa_roxburghii	Rroxscaffold_5G00385670
rosa_rugosa	Rorug04G0359400
rosa_samantha	Rh4AG420200 Rh4BG432000 Rh4CG446600 Rh4DG428100
rosa_wichuraiana	Rw4G036030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2105
AasI	GACNNNNNNGTC	1 cut(s)	134
AbsI	CCTCGAGG	1 cut(s)	485
Acc16I	TGCGCA	1 cut(s)	870
Acc65I	GGTACC	1 cut(s)	2076
AccB1I	GGYRCC	2 cut(s)	1336, 2076
AccBSI	CCGCTC	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	4 cut(s)	679, 1077, 1768, 1778
AciI	CCGC	9 cut(s)	86, 822, 875, 912, 1026, 1077, 1340, 1439, 1490
AclWI	GGATC	4 cut(s)	43, 651, 1471, 2150
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	470
AcuI	CTGAAG	4 cut(s)	230, 1467, 1773, 1823
AcyI	GRCGYC	1 cut(s)	218
AfaI	GTAC	4 cut(s)	274, 1139, 1787, 2078
AfiI	CCNNNNNNNGG	6 cut(s)	214, 1129, 1217, 1357, 1588, 1882
AflIII	ACRYGT	2 cut(s)	677, 744
AgeI	ACCGGT	2 cut(s)	1213, 2306
AhdI	GACNNNNNGTC	1 cut(s)	663
AjnI	CCWGG	2 cut(s)	888, 1429
Alw21I	GWGCWC	1 cut(s)	1294
Alw26I	GTCTC	9 cut(s)	51, 650, 1340, 1436, 1487, 1704, 1924, 1934, 2297
AlwI	GGATC	4 cut(s)	43, 651, 1471, 2150
AlwNI	CAGNNNCTG	4 cut(s)	1004, 1430, 1719, 2141
Ama87I	CYCGRG	5 cut(s)	372, 485, 722, 1325, 2121
AoxI	GGCC	8 cut(s)	105, 498, 1115, 1994, 2008, 2017, 2071, 2232
ApoI	RAATTY	1 cut(s)	470
ArsI	GACNNNNNNTTYG	2 cut(s)	2171, 2203
AsiGI	ACCGGT	2 cut(s)	1213, 2306
Asp700I	GAANNNNTTC	1 cut(s)	1109
Asp718I	GGTACC	1 cut(s)	2076
AspLEI	GCGC	4 cut(s)	841, 871, 1770, 1780
AspS9I	GGNCC	4 cut(s)	731, 1364, 1994, 2009
AsuC2I	CCSGG	2 cut(s)	1009, 1655
AsuHPI	GGTGA	3 cut(s)	136, 554, 755
AsuNHI	GCTAGC	3 cut(s)	1510, 1519, 1537
AvaI	CYCGRG	5 cut(s)	372, 485, 722, 1325, 2121
AvaII	GGWCC	2 cut(s)	731, 1364
BanI	GGYRCC	2 cut(s)	1336, 2076
BanII	GRGCYC	2 cut(s)	912, 2270
BarI	GAAGNNNNNNTAC	2 cut(s)	1368, 1400
BauI	CACGAG	2 cut(s)	61, 1557
BbsI	GAAGAC	1 cut(s)	847
Bbv12I	GWGCWC	1 cut(s)	1294
BbvCI	CCTCAGC	1 cut(s)	586
BcgI	CGANNNNNNTGC	6 cut(s)	944, 978, 1903, 1937, 2171, 2205
BciT130I	CCWGG	2 cut(s)	890, 1431
BclI	TGATCA	1 cut(s)	1966
BcnI	CCSGG	2 cut(s)	1009, 1655
BcoDI	GTCTC	9 cut(s)	51, 650, 1340, 1436, 1487, 1704, 1924, 1934, 2297
BfaI	CTAG	8 cut(s)	333, 707, 807, 1511, 1520, 1538, 1662, 1808
BfmI	CTRYAG	6 cut(s)	222, 605, 1352, 1583, 1720, 2323
BglI	GCCNNNNNGGC	1 cut(s)	2016
BglII	AGATCT	2 cut(s)	1628, 2285
BlpI	GCTNAGC	1 cut(s)	966
Bme1390I	CCNGG	4 cut(s)	890, 1009, 1431, 1655
Bme18I	GGWCC	2 cut(s)	731, 1364
BmeRI	GACNNNNNGTC	1 cut(s)	663
BmeT110I	CYCGRG	5 cut(s)	372, 485, 722, 1325, 2121
BmgT120I	GGNCC	4 cut(s)	731, 1364, 1994, 2009
BmiI	GGNNCC	6 cut(s)	733, 909, 1338, 1659, 1823, 2078
BmrFI	CCNGG	4 cut(s)	890, 1009, 1431, 1655
BmsI	GCATC	5 cut(s)	1188, 1538, 2104, 2122, 2208
BmtI	GCTAGC	3 cut(s)	1514, 1523, 1541
BpiI	GAAGAC	1 cut(s)	847
Bpu10I	CCTNAGC	2 cut(s)	564, 586
Bpu1102I	GCTNAGC	1 cut(s)	966
BpuEI	CTTGAG	5 cut(s)	86, 317, 844, 1145, 1364
BpuMI	CCSGG	2 cut(s)	1009, 1655
Bsa29I	ATCGAT	2 cut(s)	38, 2130
BsaHI	GRCGYC	1 cut(s)	218
BsaI	GGTCTC	2 cut(s)	1340, 2297
BsaJI	CCNNGG	4 cut(s)	531, 888, 954, 1866
BsaWI	WCCGGW	3 cut(s)	1213, 2147, 2306
BsaXI	ACNNNNNCTCC	2 cut(s)	2036, 2066
Bsc4I	CCNNNNNNNGG	6 cut(s)	214, 1129, 1217, 1357, 1588, 1882
Bse118I	RCCGGY	3 cut(s)	1213, 2073, 2306
Bse1I	ACTGG	6 cut(s)	121, 397, 464, 855, 1118, 2189
Bse3DI	GCAATG	3 cut(s)	864, 1532, 2115
BseBI	CCWGG	2 cut(s)	890, 1431
BseCI	ATCGAT	2 cut(s)	38, 2130
BseDI	CCNNGG	4 cut(s)	531, 888, 954, 1866
BseGI	GGATG	5 cut(s)	520, 733, 1203, 1366, 1491
BseLI	CCNNNNNNNGG	6 cut(s)	214, 1129, 1217, 1357, 1588, 1882
BseMI	GCAATG	3 cut(s)	864, 1532, 2115
BseMII	CTCAG	5 cut(s)	438, 600, 980, 1929, 2330
BseNI	ACTGG	6 cut(s)	121, 397, 464, 855, 1118, 2189
BseRI	GAGGAG	3 cut(s)	317, 920, 1693
BseYI	CCCAGC	1 cut(s)	697
Bsh1236I	CGCG	4 cut(s)	679, 1077, 1768, 1778
Bsh1285I	CGRYCG	1 cut(s)	1698
BshFI	GGCC	8 cut(s)	107, 500, 1117, 1996, 2010, 2019, 2073, 2234
BshNI	GGYRCC	2 cut(s)	1336, 2076
BshTI	ACCGGT	2 cut(s)	1213, 2306
BshVI	ATCGAT	2 cut(s)	38, 2130
BsiEI	CGRYCG	1 cut(s)	1698
BsiHKAI	GWGCWC	1 cut(s)	1294
BsiHKCI	CYCGRG	5 cut(s)	372, 485, 722, 1325, 2121
BsiSI	CCGG	9 cut(s)	260, 1008, 1214, 1367, 1655, 2074, 2148, 2174, 2307
BslFI	GGGAC	5 cut(s)	315, 717, 1065, 1637, 1775
BslI	CCNNNNNNNGG	6 cut(s)	214, 1129, 1217, 1357, 1588, 1882
BsmAI	GTCTC	9 cut(s)	51, 650, 1340, 1436, 1487, 1704, 1924, 1934, 2297
BsmFI	GGGAC	5 cut(s)	315, 717, 1065, 1637, 1775
BsmI	GAATGC	2 cut(s)	593, 1426
BsnI	GGCC	8 cut(s)	107, 500, 1117, 1996, 2010, 2019, 2073, 2234
Bso31I	GGTCTC	2 cut(s)	1340, 2297
BsoBI	CYCGRG	5 cut(s)	372, 485, 722, 1325, 2121
Bsp1286I	GDGCHC	3 cut(s)	912, 1294, 2270
Bsp1407I	TGTACA	1 cut(s)	1785
Bsp1720I	GCTNAGC	1 cut(s)	966
BspACI	CCGC	9 cut(s)	86, 822, 875, 912, 1026, 1077, 1340, 1439, 1490
BspANI	GGCC	8 cut(s)	107, 500, 1117, 1996, 2010, 2019, 2073, 2234
BspCNI	CTCAG	5 cut(s)	439, 599, 979, 1930, 2329
BspDI	ATCGAT	2 cut(s)	38, 2130
BspFNI	CGCG	4 cut(s)	679, 1077, 1768, 1778
BspLI	GGNNCC	6 cut(s)	733, 909, 1338, 1659, 1823, 2078
BspMAI	CTGCAG	4 cut(s)	226, 609, 1356, 1724
BspOI	GCTAGC	3 cut(s)	1514, 1523, 1541
BspPI	GGATC	4 cut(s)	43, 651, 1471, 2150
BspT107I	GGYRCC	2 cut(s)	1336, 2076
BspTNI	GGTCTC	2 cut(s)	1340, 2297
BsrBI	CCGCTC	1 cut(s)	88
BsrDI	GCAATG	3 cut(s)	864, 1532, 2115
BsrFI	RCCGGY	3 cut(s)	1213, 2073, 2306
BsrGI	TGTACA	1 cut(s)	1785
BsrI	ACTGG	6 cut(s)	121, 397, 464, 855, 1118, 2189
BssAI	RCCGGY	3 cut(s)	1213, 2073, 2306
BssECI	CCNNGG	4 cut(s)	531, 888, 954, 1866
BssNI	GRCGYC	1 cut(s)	218
BssSI	CACGAG	2 cut(s)	61, 1557
BssT1I	CCWWGG	2 cut(s)	531, 1866
Bst2BI	CACGAG	2 cut(s)	61, 1557
Bst2UI	CCWGG	2 cut(s)	890, 1431
Bst4CI	ACNGT	5 cut(s)	356, 1058, 1945, 2028, 2165
Bst6I	CTCTTC	3 cut(s)	502, 1443, 1670
BstACI	GRCGYC	1 cut(s)	218
BstAPI	GCANNNNNTGC	2 cut(s)	1181, 2141
BstAUI	TGTACA	1 cut(s)	1785
BstC8I	GCNNGC	8 cut(s)	651, 873, 912, 1131, 1512, 1521, 1539, 1599
BstDEI	CTNAG	8 cut(s)	447, 564, 586, 797, 966, 1016, 1938, 2316
BstENI	CCTNNNNNAGG	3 cut(s)	212, 1127, 1586
BstF5I	GGATG	5 cut(s)	520, 733, 1203, 1366, 1491
BstFNI	CGCG	4 cut(s)	679, 1077, 1768, 1778
BstHHI	GCGC	4 cut(s)	841, 871, 1770, 1780
BstMAI	GTCTC	9 cut(s)	51, 650, 1340, 1436, 1487, 1704, 1924, 1934, 2297
BstMCI	CGRYCG	1 cut(s)	1698
BstNI	CCWGG	2 cut(s)	890, 1431
BstNSI	RCATGY	2 cut(s)	986, 1733
BstSCI	CCNGG	4 cut(s)	888, 1007, 1429, 1653
BstSFI	CTRYAG	6 cut(s)	222, 605, 1352, 1583, 1720, 2323
BstUI	CGCG	4 cut(s)	679, 1077, 1768, 1778
BstV2I	GAAGAC	1 cut(s)	847
BstX2I	RGATCY	3 cut(s)	1628, 2155, 2285
BstYI	RGATCY	3 cut(s)	1628, 2155, 2285
Bsu15I	ATCGAT	2 cut(s)	38, 2130
BsuRI	GGCC	8 cut(s)	107, 500, 1117, 1996, 2010, 2019, 2073, 2234
BsuTUI	ATCGAT	2 cut(s)	38, 2130
BtgZI	GCGATG	1 cut(s)	2049
BtsCI	GGATG	5 cut(s)	520, 733, 1203, 1366, 1491
BtsI	GCAGTG	5 cut(s)	602, 1174, 1294, 1431, 2142
Cac8I	GCNNGC	8 cut(s)	651, 873, 912, 1131, 1512, 1521, 1539, 1599
CaiI	CAGNNNCTG	4 cut(s)	1004, 1430, 1719, 2141
CfoI	GCGC	4 cut(s)	841, 871, 1770, 1780
Cfr10I	RCCGGY	3 cut(s)	1213, 2073, 2306
Cfr13I	GGNCC	4 cut(s)	731, 1364, 1994, 2009
ClaI	ATCGAT	2 cut(s)	38, 2130
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	4 cut(s)	273, 1138, 1786, 2077
CspAI	ACCGGT	2 cut(s)	1213, 2306
CviAII	CATG	6 cut(s)	163, 316, 983, 1730, 1795, 2294
CviQI	GTAC	4 cut(s)	273, 1138, 1786, 2077
DdeI	CTNAG	8 cut(s)	447, 564, 586, 797, 966, 1016, 1938, 2316
DraI	TTTAAA	2 cut(s)	112, 408
DrdI	GACNNNNNNGTC	1 cut(s)	134
DriI	GACNNNNNGTC	1 cut(s)	663
DseDI	GACNNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	498
Eam1104I	CTCTTC	3 cut(s)	502, 1443, 1670
Eam1105I	GACNNNNNGTC	1 cut(s)	663
EarI	CTCTTC	3 cut(s)	502, 1443, 1670
EciI	GGCGGA	2 cut(s)	837, 1505
Eco130I	CCWWGG	2 cut(s)	531, 1866
Eco147I	AGGCCT	1 cut(s)	107
Eco24I	GRGCYC	2 cut(s)	912, 2270
Eco31I	GGTCTC	2 cut(s)	1340, 2297
Eco47I	GGWCC	2 cut(s)	731, 1364
Eco57I	CTGAAG	4 cut(s)	230, 1467, 1773, 1823
Eco88I	CYCGRG	5 cut(s)	372, 485, 722, 1325, 2121
EcoNI	CCTNNNNNAGG	3 cut(s)	212, 1127, 1586
EcoO109I	RGGNCCY	1 cut(s)	2009
EcoRI	GAATTC	1 cut(s)	470
EcoRII	CCWGG	2 cut(s)	888, 1429
EcoT14I	CCWWGG	2 cut(s)	531, 1866
EcoT38I	GRGCYC	2 cut(s)	912, 2270
ErhI	CCWWGG	2 cut(s)	531, 1866
FaeI	CATG	6 cut(s)	166, 319, 986, 1733, 1798, 2297
FalI	AAGNNNNNCTT	4 cut(s)	66, 98, 2222, 2254
FaqI	GGGAC	5 cut(s)	315, 717, 1065, 1637, 1775
FatI	CATG	6 cut(s)	162, 315, 982, 1729, 1794, 2293
FauI	CCCGC	2 cut(s)	919, 1070
FauNDI	CATATG	1 cut(s)	817
FbaI	TGATCA	1 cut(s)	1966
FblI	GTMKAC	1 cut(s)	138
FokI	GGATG	5 cut(s)	527, 740, 1210, 1373, 1498
FriOI	GRGCYC	2 cut(s)	912, 2270
FspBI	CTAG	8 cut(s)	333, 707, 807, 1511, 1520, 1538, 1662, 1808
FspI	TGCGCA	1 cut(s)	870
GlaI	GCGC	4 cut(s)	840, 870, 1769, 1779
GsaI	CCCAGC	1 cut(s)	701
HaeIII	GGCC	8 cut(s)	107, 500, 1117, 1996, 2010, 2019, 2073, 2234
HapII	CCGG	9 cut(s)	260, 1008, 1214, 1367, 1655, 2074, 2148, 2174, 2307
HgaI	GACGC	1 cut(s)	207
HhaI	GCGC	4 cut(s)	841, 871, 1770, 1780
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	6 cut(s)	166, 319, 986, 1733, 1798, 2297
Hin6I	GCGC	4 cut(s)	839, 869, 1768, 1778
HinP1I	GCGC	4 cut(s)	839, 869, 1768, 1778
HincII	GTYRAC	3 cut(s)	205, 525, 668
HindII	GTYRAC	3 cut(s)	205, 525, 668
HindIII	AAGCTT	2 cut(s)	1277, 1571
HinfI	GANTC	8 cut(s)	5, 59, 380, 664, 884, 1012, 1299, 2089
HpaI	GTTAAC	1 cut(s)	525
HpaII	CCGG	9 cut(s)	260, 1008, 1214, 1367, 1655, 2074, 2148, 2174, 2307
HphI	GGTGA	3 cut(s)	136, 554, 755
Hpy188I	TCNGA	8 cut(s)	364, 448, 925, 1636, 1833, 1963, 1971, 2088
Hpy188III	TCNNGA	6 cut(s)	465, 1316, 1325, 1467, 1841, 2242
Hpy99I	CGWCG	3 cut(s)	13, 16, 49
HpyCH4III	ACNGT	5 cut(s)	356, 1058, 1945, 2028, 2165
HpyCH4IV	ACGT	4 cut(s)	135, 141, 746, 2259
HpyF3I	CTNAG	8 cut(s)	447, 564, 586, 797, 966, 1016, 1938, 2316
HpySE526I	ACGT	4 cut(s)	135, 141, 746, 2259
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	6 cut(s)	166, 319, 986, 1733, 1798, 2297
HspAI	GCGC	4 cut(s)	839, 869, 1768, 1778
KpnI	GGTACC	1 cut(s)	2080
Ksp22I	TGATCA	1 cut(s)	1966
KspAI	GTTAAC	1 cut(s)	525
LmnI	GCTCC	4 cut(s)	67, 824, 907, 975
LweI	GCATC	5 cut(s)	1188, 1538, 2104, 2122, 2208
MaeI	CTAG	8 cut(s)	333, 707, 807, 1511, 1520, 1538, 1662, 1808
MaeII	ACGT	4 cut(s)	135, 141, 746, 2259
MaeIII	GTNAC	7 cut(s)	142, 600, 881, 931, 1405, 2137, 2260
MbiI	CCGCTC	1 cut(s)	88
MflI	RGATCY	3 cut(s)	1628, 2155, 2285
MhlI	GDGCHC	3 cut(s)	912, 1294, 2270
MluCI	AATT	8 cut(s)	253, 470, 578, 635, 1155, 1303, 1856, 1986
MluI	ACGCGT	1 cut(s)	677
MlyI	GAGTC	4 cut(s)	53, 673, 878, 1021
MmeI	TCCRAC	2 cut(s)	1167, 1338
MroXI	GAANNNNTTC	1 cut(s)	1109
MseI	TTAA	6 cut(s)	111, 407, 524, 581, 1395, 1773
MslI	CAYNNNNRTG	2 cut(s)	1793, 2298
MspA1I	CMGCKG	5 cut(s)	590, 649, 701, 1004, 1439
MspI	CCGG	9 cut(s)	260, 1008, 1214, 1367, 1655, 2074, 2148, 2174, 2307
MspR9I	CCNGG	4 cut(s)	890, 1009, 1431, 1655
Mva1269I	GAATGC	2 cut(s)	593, 1426
MvaI	CCWGG	2 cut(s)	890, 1431
MvnI	CGCG	4 cut(s)	679, 1077, 1768, 1778
NciI	CCSGG	2 cut(s)	1009, 1655
NdeI	CATATG	1 cut(s)	817
NheI	GCTAGC	3 cut(s)	1510, 1519, 1537
NlaIII	CATG	6 cut(s)	166, 319, 986, 1733, 1798, 2297
NlaIV	GGNNCC	6 cut(s)	733, 909, 1338, 1659, 1823, 2078
NmeAIII	GCCGAG	1 cut(s)	1995
NmuCI	GTSAC	5 cut(s)	142, 600, 881, 931, 2137
NsbI	TGCGCA	1 cut(s)	870
NspI	RCATGY	2 cut(s)	986, 1733
PaeR7I	CTCGAG	4 cut(s)	372, 485, 1325, 2121
PceI	AGGCCT	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	2 cut(s)	44, 132
PctI	GAATGC	2 cut(s)	593, 1426
PdmI	GAANNNNTTC	1 cut(s)	1109
PfeI	GAWTC	3 cut(s)	380, 1299, 2089
PfoI	TCCNGGA	1 cut(s)	1653
PinAI	ACCGGT	2 cut(s)	1213, 2306
PleI	GAGTC	4 cut(s)	53, 672, 878, 1020
PpsI	GAGTC	4 cut(s)	53, 672, 878, 1020
PsiI	TTATAA	1 cut(s)	2105
Psp6I	CCWGG	2 cut(s)	888, 1429
PspFI	CCCAGC	1 cut(s)	697
PspGI	CCWGG	2 cut(s)	888, 1429
PspN4I	GGNNCC	6 cut(s)	733, 909, 1338, 1659, 1823, 2078
PspPI	GGNCC	4 cut(s)	731, 1364, 1994, 2009
PspXI	VCTCGAGB	3 cut(s)	372, 485, 2121
PstI	CTGCAG	4 cut(s)	226, 609, 1356, 1724
PstNI	CAGNNNCTG	4 cut(s)	1004, 1430, 1719, 2141
PsuI	RGATCY	3 cut(s)	1628, 2155, 2285
PvuII	CAGCTG	4 cut(s)	590, 649, 701, 1004
RsaI	GTAC	4 cut(s)	274, 1139, 1787, 2078
RsaNI	GTAC	4 cut(s)	273, 1138, 1786, 2077
RseI	CAYNNNNRTG	2 cut(s)	1793, 2298
SaqAI	TTAA	6 cut(s)	111, 407, 524, 581, 1395, 1773
Sau96I	GGNCC	4 cut(s)	731, 1364, 1994, 2009
SchI	GAGTC	4 cut(s)	53, 673, 878, 1021
ScrFI	CCNGG	4 cut(s)	890, 1009, 1431, 1655
SduI	GDGCHC	3 cut(s)	912, 1294, 2270
SfaNI	GCATC	5 cut(s)	1188, 1538, 2104, 2122, 2208
SfcI	CTRYAG	6 cut(s)	222, 605, 1352, 1583, 1720, 2323
SfiI	GGCCNNNNNGGCC	1 cut(s)	2016
Sfr274I	CTCGAG	4 cut(s)	372, 485, 1325, 2121
SinI	GGWCC	2 cut(s)	731, 1364
SlaI	CTCGAG	4 cut(s)	372, 485, 1325, 2121
SmiI	ATTTAAAT	1 cut(s)	408
SmiMI	CAYNNNNRTG	2 cut(s)	1793, 2298
SmlI	CTYRAG	9 cut(s)	101, 296, 372, 485, 859, 1124, 1325, 1343, 2121
SmoI	CTYRAG	9 cut(s)	101, 296, 372, 485, 859, 1124, 1325, 1343, 2121
Sse9I	AATT	8 cut(s)	253, 470, 578, 635, 1155, 1303, 1856, 1986
SseBI	AGGCCT	1 cut(s)	107
SsiI	CCGC	9 cut(s)	86, 822, 875, 912, 1026, 1077, 1340, 1439, 1490
SspMI	CTAG	8 cut(s)	333, 707, 807, 1511, 1520, 1538, 1662, 1808
StuI	AGGCCT	1 cut(s)	107
StyD4I	CCNGG	4 cut(s)	888, 1007, 1429, 1653
StyI	CCWWGG	2 cut(s)	531, 1866
SwaI	ATTTAAAT	1 cut(s)	408
TaaI	ACNGT	5 cut(s)	356, 1058, 1945, 2028, 2165
TaiI	ACGT	4 cut(s)	138, 144, 749, 2262
TaqII	GACCGA	2 cut(s)	968, 1684
TasI	AATT	8 cut(s)	253, 470, 578, 635, 1155, 1303, 1856, 1986
TatI	WGTACW	2 cut(s)	1137, 1785
TauI	GCSGC	3 cut(s)	878, 1028, 1342
TfiI	GAWTC	3 cut(s)	380, 1299, 2089
Tru1I	TTAA	6 cut(s)	111, 407, 524, 581, 1395, 1773
Tru9I	TTAA	6 cut(s)	111, 407, 524, 581, 1395, 1773
TseFI	GTSAC	5 cut(s)	142, 600, 881, 931, 2137
Tsp45I	GTSAC	5 cut(s)	142, 600, 881, 931, 2137
TspDTI	ATGAA	8 cut(s)	372, 531, 804, 984, 1028, 1233, 1433, 1583
TspGWI	ACGGA	4 cut(s)	48, 260, 1815, 1898
VpaK11BI	GGWCC	2 cut(s)	731, 1364
XagI	CCTNNNNNAGG	3 cut(s)	212, 1127, 1586
XapI	RAATTY	1 cut(s)	470
XceI	RCATGY	2 cut(s)	986, 1733
XhoI	CTCGAG	4 cut(s)	372, 485, 1325, 2121
XmiI	GTMKAC	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	1109
XspI	CTAG	8 cut(s)	333, 707, 807, 1511, 1520, 1538, 1662, 1808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.