Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0019744

Physical Location & Seq

Genomic Coordinates Forward (+)

9074984 .. 9075788

Gene Structure 805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1122700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGCACTGTGGACATTGTGCAGATGATGTTAAGAAAGGCTGCAATAAGACGAAAGGAGTTGAAAGGGTTGAGCTTGATAAGGTGAACAAAGTAGTGATAGTGGAAGGAAGATTTCGTCATAAAAAGCTTCTCAAATGCCTCCGAAGGGCTAACAAGATAGTTAACGTAAAGAGGTTGGTTATGGAAGAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0019725 GO:0022414 GO:0030001 GO:0030003 GO:0032501 GO:0032502 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04978 map04978

Pfam Domains

Protein Families

HMA

Protein Analysis

65

Amino Acids

7.41

Weight (kDa)

9.84

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	1 - 51	2.5e-08	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019744)

Species	Orthologous Gene IDs
malus_domestica	MD13G1122700.v1.1
prunus_persica	Prupe.1G222500_v2.0.a1
pyrus_communis	pycom16g10530
rosa_roxburghii	Rroxscaffold_5G00371540
rosa_samantha	Rh4AG294400 Rh4BG300400 Rh4DG297500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	62
AluBI	AGCT	2 cut(s)	73, 127
AluI	AGCT	2 cut(s)	73, 127
ApeKI	GCWGC	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	26
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	26
BsgI	GTGCAG	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	26
BtsIMutI	CAGTG	1 cut(s)	4
CviJI	RGCY	4 cut(s)	39, 73, 127, 149
CviKI_1	RGCY	4 cut(s)	39, 73, 127, 149
FaiI	YATR	3 cut(s)	120, 182, 193
Fnu4HI	GCNGC	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	125
HpaI	GTTAAC	1 cut(s)	163
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	3 cut(s)	11, 85, 163
Hpy188I	TCNGA	1 cut(s)	143
Hpy8I	GTNNAC	3 cut(s)	11, 85, 163
HpyAV	CCTTC	2 cut(s)	98, 138
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	3 cut(s)	4, 20, 42
HpySE526I	ACGT	1 cut(s)	165
KspAI	GTTAAC	1 cut(s)	163
Lsp1109I	GCAGC	1 cut(s)	26
MaeII	ACGT	1 cut(s)	165
MboII	GAAGA	1 cut(s)	120
MnlI	CCTC	2 cut(s)	149, 165
MseI	TTAA	2 cut(s)	30, 162
PkrI	GCNGC	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	30, 162
SatI	GCNGC	1 cut(s)	40
SetI	ASST	5 cut(s)	75, 84, 129, 168, 176
SgeI	CNNG	2 cut(s)	86, 166
TaaI	ACNGT	1 cut(s)	8
TaiI	ACGT	1 cut(s)	168
Tru1I	TTAA	2 cut(s)	30, 162
Tru9I	TTAA	2 cut(s)	30, 162
TseI	GCWGC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.