Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0019744

Physical Location & Seq

Genomic Coordinates Forward (+)

7204783 .. 7206626

Gene Structure 1844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g10530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGAGGCCTTTACTTGGCTAAAGAGAAAAGGGTTTGGGACAGCTGACCAAGTCCCCTTAAGAGAGGAGGTTATGTGCCTGCTTGCTGAGCTAGAATTCAACATGCACTGTGGACATTGTGCAGATGATGTCAAGAAATGCTGCAGTAAGACGAAAGGAGTTGAAAGTGTTGAGGTTGATCAAGTGAACAAAGTAGTGACAGTGGAAGGAAGATTTCGTCATAAAAAGCTTCTCAAATGCCTCCGAAGGGCTAACAAGATTGTTAAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

91

Amino Acids

10.27

Weight (kDa)

9.15

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019744)

Species	Orthologous Gene IDs
malus_domestica	MD13G1122700.v1.1
prunus_persica	Prupe.1G222500_v2.0.a1
pyrus_communis	pycom16g10530
rosa_roxburghii	Rroxscaffold_5G00371540
rosa_samantha	Rh4AG294400 Rh4BG300400 Rh4DG297500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	15, 247
AflII	CTTAAG	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	100, 164
AluBI	AGCT	3 cut(s)	44, 91, 229
AluI	AGCT	3 cut(s)	44, 91, 229
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	128
BclI	TGATCA	1 cut(s)	178
BfaI	CTAG	2 cut(s)	92, 271
BfmI	CTRYAG	1 cut(s)	142
BfrI	CTTAAG	1 cut(s)	58
BisI	GCNGC	1 cut(s)	142
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	143
Bpu1102I	GCTNAGC	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 247
BseLI	CCNNNNNNNGG	2 cut(s)	15, 247
BseMII	CTCAG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	8
BslFI	GGGAC	2 cut(s)	38, 52
BslI	CCNNNNNNNGG	2 cut(s)	15, 247
BsmFI	GGGAC	2 cut(s)	38, 52
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	178
Bsp1720I	GCTNAGC	1 cut(s)	87
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	146
BspTI	CTTAAG	1 cut(s)	58
BssMI	GATC	1 cut(s)	178
Bst4CI	ACNGT	2 cut(s)	110, 202
BstAFI	CTTAAG	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	80, 84
BstDEI	CTNAG	1 cut(s)	87
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	106
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	8
BtsIMutI	CAGTG	2 cut(s)	106, 207
Cac8I	GCNNGC	2 cut(s)	80, 84
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	7 cut(s)	8, 19, 44, 91, 229, 251, 270
CviKI_1	RGCY	7 cut(s)	8, 19, 44, 91, 229, 251, 270
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eco147I	AGGCCT	1 cut(s)	8
EcoRI	GAATTC	1 cut(s)	95
FaeI	CATG	1 cut(s)	106
FaiI	YATR	3 cut(s)	74, 104, 222
FaqI	GGGAC	2 cut(s)	38, 52
FatI	CATG	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	142
FspBI	CTAG	2 cut(s)	92, 271
GluI	GCNGC	1 cut(s)	142
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	227
Hpy166II	GTNNAC	2 cut(s)	113, 187
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	2 cut(s)	113, 187
HpyAV	CCTTC	2 cut(s)	200, 240
HpyCH4III	ACNGT	2 cut(s)	110, 202
HpyCH4V	TGCA	3 cut(s)	106, 122, 144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	1 cut(s)	92
Lsp1109I	GCAGC	1 cut(s)	128
MaeI	CTAG	2 cut(s)	92, 271
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	222
MluCI	AATT	1 cut(s)	95
MnlI	CCTC	4 cut(s)	58, 61, 166, 251
MseI	TTAA	2 cut(s)	59, 264
MspA1I	CMGCKG	1 cut(s)	44
MspCI	CTTAAG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	106
PceI	AGGCCT	1 cut(s)	8
PflFI	GACNNNGTC	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	143
PstI	CTGCAG	1 cut(s)	146
PsyI	GACNNNGTC	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	59, 264
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	1 cut(s)	178
SetI	ASST	5 cut(s)	46, 72, 93, 177, 231
SfcI	CTRYAG	1 cut(s)	142
SgeI	CNNG	9 cut(s)	27, 62, 91, 95, 104, 115, 145, 194, 268
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	1 cut(s)	95
SseBI	AGGCCT	1 cut(s)	8
SspMI	CTAG	2 cut(s)	92, 271
StuI	AGGCCT	1 cut(s)	8
TaaI	ACNGT	2 cut(s)	110, 202
TasI	AATT	1 cut(s)	95
Tru1I	TTAA	2 cut(s)	59, 264
Tru9I	TTAA	2 cut(s)	59, 264
TscAI	CASTG	2 cut(s)	113, 207
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	196
TspRI	CASTG	2 cut(s)	113, 207
Tth111I	GACNNNGTC	1 cut(s)	50
Vha464I	CTTAAG	1 cut(s)	58
XapI	RAATTY	1 cut(s)	95
XceI	RCATGY	1 cut(s)	106
XspI	CTAG	2 cut(s)	92, 271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.