Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0019744

Physical Location & Seq

Genomic Coordinates Reverse (-)

51938276 .. 51938628

Gene Structure 353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG297500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGCACTGTGACCATTGTGCAATTGATGTCAGAAATTGCTGCATCACTGAAAAAGGAGTCGAACATGTGGTATTTGATAAGGAGAAAAAGCTAGTGAAAGTGGAAGGAAGGTATGATCTCAAAAAGATTATCGATCGCCTCAGGAAGAAGGACAAGATAGTAATATTGATTGGGAAAAAAATGGAAGAAACTCAGGAACAAGACGAGTCTCGTGTTCAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0031974 GO:0031981 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0070013 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

74

Amino Acids

8.77

Weight (kDa)

8.71

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	1 - 50	5.8e-06	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019744)

Species	Orthologous Gene IDs
malus_domestica	MD13G1122700.v1.1
prunus_persica	Prupe.1G222500_v2.0.a1
pyrus_communis	pycom16g10530
rosa_roxburghii	Rroxscaffold_5G00371540
rosa_samantha	Rh4AG294400 Rh4BG300400 Rh4DG297500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflIII	ACRYGT	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	218
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	39
AxyI	CCTNAGG	1 cut(s)	140
BauI	CACGAG	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	92
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
BmsI	GCATC	1 cut(s)	51
Bsa29I	ATCGAT	1 cut(s)	132
Bse21I	CCTNAGG	1 cut(s)	140
BseCI	ATCGAT	1 cut(s)	132
BseMII	CTCAG	2 cut(s)	154, 206
BseXI	GCAGC	1 cut(s)	26
Bsh1285I	CGRYCG	1 cut(s)	136
BshVI	ATCGAT	1 cut(s)	132
BsiEI	CGRYCG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	115, 133
BspCNI	CTCAG	2 cut(s)	153, 205
BspDI	ATCGAT	1 cut(s)	132
BssMI	GATC	2 cut(s)	115, 133
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	140, 192
BstKTI	GATC	2 cut(s)	118, 136
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	2 cut(s)	115, 133
BstMCI	CGRYCG	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	26
Bsu15I	ATCGAT	1 cut(s)	132
Bsu36I	CCTNAGG	1 cut(s)	140
BsuTUI	ATCGAT	1 cut(s)	132
BtsIMutI	CAGTG	2 cut(s)	4, 45
ClaI	ATCGAT	1 cut(s)	132
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	1 cut(s)	91
CviKI_1	RGCY	1 cut(s)	91
DdeI	CTNAG	2 cut(s)	140, 192
DpnI	GATC	2 cut(s)	117, 135
DpnII	GATC	2 cut(s)	115, 133
Eco81I	CCTNAGG	1 cut(s)	140
FaeI	CATG	1 cut(s)	68
FaiI	YATR	2 cut(s)	66, 114
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	40
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	1 cut(s)	40
Hin1II	CATG	1 cut(s)	68
HinfI	GANTC	2 cut(s)	57, 206
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	2 cut(s)	142, 194
HpyAV	CCTTC	3 cut(s)	98, 102, 142
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4V	TGCA	3 cut(s)	4, 20, 42
HpyF3I	CTNAG	2 cut(s)	140, 192
Hsp92II	CATG	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	115, 133
LpnPI	CCDG	2 cut(s)	127, 179
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	2 cut(s)	117, 135
MboI	GATC	2 cut(s)	115, 133
MboII	GAAGA	2 cut(s)	157, 197
MfeI	CAATTG	1 cut(s)	21
MluCI	AATT	2 cut(s)	21, 34
MlyI	GAGTC	2 cut(s)	66, 215
MnlI	CCTC	1 cut(s)	149
MunI	CAATTG	1 cut(s)	21
NdeII	GATC	2 cut(s)	115, 133
NlaIII	CATG	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	8
NspI	RCATGY	1 cut(s)	68
PciI	ACATGT	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	41
Ple19I	CGATCG	1 cut(s)	136
PleI	GAGTC	2 cut(s)	65, 214
PpsI	GAGTC	2 cut(s)	65, 214
PscI	ACATGT	1 cut(s)	64
PvuI	CGATCG	1 cut(s)	136
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	2 cut(s)	115, 133
SchI	GAGTC	2 cut(s)	66, 215
SetI	ASST	2 cut(s)	93, 113
SfaNI	GCATC	1 cut(s)	51
SgeI	CNNG	7 cut(s)	77, 104, 154, 166, 206, 212, 217
Sse9I	AATT	2 cut(s)	21, 34
SspI	AATATT	1 cut(s)	165
SspMI	CTAG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	60, 132
TasI	AATT	2 cut(s)	21, 34
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	1 cut(s)	39
Tsp45I	GTSAC	1 cut(s)	8
TspRI	CASTG	1 cut(s)	52
XceI	RCATGY	1 cut(s)	68
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.