Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0019744

Physical Location & Seq

Genomic Coordinates Reverse (-)

60798598 .. 60799293

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG294400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAAGGGTTTTAAGAAAAGAACCCTGAAGTGGTTCACTACCAAAAAGAAAAAATCCTTGCAATGGTTTCAGAGAACAAGGTCTGGAAAATATGAACAAGTCTCAGTCTTATTAAGAGAAGAACCAGAGTCGAACGAAAAAAGAGGGAAAGAAGAACCAGAGGTTTGCCTGGCTGCTGAGCTAGAATTTAGTATGCACTGTGACCATTGTGCAATTGATGTCAGAAATTGCTGCATCACAGAAAAAGGAGTCGAACATGTGGTATTTGATAAGGAGAAAAAGCTAGTGAAAGTGGAAGGAAGGTTTGATCTCAAAAAGCTTATCGATCGCCTCCGGAAGAAGGACAAGATAGTAATATTGATTGGGAAAAAAATGGAAGAAACTCAGGAACAAGACGAGTCTCGTGTTCAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0031974 GO:0031981 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0070013 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

138

Amino Acids

16.41

Weight (kDa)

9.35

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	65 - 114	3.5e-06	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019744)

Species	Orthologous Gene IDs
malus_domestica	MD13G1122700.v1.1
prunus_persica	Prupe.1G222500_v2.0.a1
pyrus_communis	pycom16g10530
rosa_roxburghii	Rroxscaffold_5G00371540
rosa_samantha	Rh4AG294400 Rh4BG300400 Rh4DG297500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	47
AfiI	CCNNNNNNNGG	3 cut(s)	30, 63, 340
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	3 cut(s)	181, 283, 319
AluI	AGCT	3 cut(s)	181, 283, 319
Alw26I	GTCTC	2 cut(s)	106, 405
Aor13HI	TCCGGA	1 cut(s)	333
ApeKI	GCWGC	2 cut(s)	173, 231
ApoI	RAATTY	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	32
BauI	CACGAG	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	160, 218
BciT130I	CCWGG	1 cut(s)	170
BcoDI	GTCTC	2 cut(s)	106, 405
BfaI	CTAG	2 cut(s)	182, 284
BisI	GCNGC	2 cut(s)	174, 232
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	2 cut(s)	175, 233
Bme1390I	CCNGG	1 cut(s)	170
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	243
Bpu1102I	GCTNAGC	1 cut(s)	177
Bsa29I	ATCGAT	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 63, 340
Bse3DI	GCAATG	1 cut(s)	68
BseAI	TCCGGA	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	170
BseCI	ATCGAT	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	30, 63, 340
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	3 cut(s)	117, 168, 398
BseXI	GCAGC	2 cut(s)	160, 218
Bsh1285I	CGRYCG	1 cut(s)	328
BshVI	ATCGAT	1 cut(s)	324
BsiEI	CGRYCG	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	334
BslI	CCNNNNNNNGG	3 cut(s)	30, 63, 340
BsmAI	GTCTC	2 cut(s)	106, 405
Bsp13I	TCCGGA	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	307, 325
Bsp1720I	GCTNAGC	1 cut(s)	177
BspCNI	CTCAG	3 cut(s)	116, 169, 397
BspDI	ATCGAT	1 cut(s)	324
BspEI	TCCGGA	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	68
BssMI	GATC	2 cut(s)	307, 325
BssSI	CACGAG	1 cut(s)	402
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	200
BstDEI	CTNAG	3 cut(s)	103, 177, 384
BstKTI	GATC	2 cut(s)	310, 328
BstMAI	GTCTC	2 cut(s)	106, 405
BstMBI	GATC	2 cut(s)	307, 325
BstMCI	CGRYCG	1 cut(s)	328
BstNI	CCWGG	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	160, 218
Bsu15I	ATCGAT	1 cut(s)	324
BsuTUI	ATCGAT	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	196
ClaI	ATCGAT	1 cut(s)	324
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	4 cut(s)	173, 181, 283, 319
CviKI_1	RGCY	4 cut(s)	173, 181, 283, 319
DdeI	CTNAG	3 cut(s)	103, 177, 384
DpnI	GATC	2 cut(s)	309, 327
DpnII	GATC	2 cut(s)	307, 325
Eco57I	CTGAAG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	168
FaeI	CATG	1 cut(s)	260
FaiI	YATR	3 cut(s)	93, 194, 258
FatI	CATG	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	174, 232
Fsp4HI	GCNGC	2 cut(s)	174, 232
FspBI	CTAG	2 cut(s)	182, 284
GluI	GCNGC	2 cut(s)	174, 232
HapII	CCGG	1 cut(s)	334
Hin1II	CATG	1 cut(s)	260
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	3 cut(s)	128, 249, 398
HpaII	CCGG	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	2 cut(s)	72, 224
Hpy188III	TCNNGA	3 cut(s)	84, 334, 386
Hpy8I	GTNNAC	1 cut(s)	36
HpyAV	CCTTC	3 cut(s)	290, 294, 334
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	4 cut(s)	61, 196, 212, 234
HpyF3I	CTNAG	3 cut(s)	103, 177, 384
Hsp92II	CATG	1 cut(s)	260
Kpn2I	TCCGGA	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	307, 325
LpnPI	CCDG	8 cut(s)	38, 69, 138, 155, 171, 182, 347, 371
Lsp1109I	GCAGC	2 cut(s)	160, 218
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	2 cut(s)	182, 284
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	2 cut(s)	309, 327
MboI	GATC	2 cut(s)	307, 325
MboII	GAAGA	4 cut(s)	131, 164, 349, 389
MfeI	CAATTG	1 cut(s)	213
MluCI	AATT	3 cut(s)	185, 213, 226
MlyI	GAGTC	3 cut(s)	137, 258, 407
MnlI	CCTC	3 cut(s)	137, 154, 341
MroI	TCCGGA	1 cut(s)	333
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	2 cut(s)	12, 113
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	170
MunI	CAATTG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	307, 325
NlaIII	CATG	1 cut(s)	260
NmuCI	GTSAC	1 cut(s)	200
NspI	RCATGY	1 cut(s)	260
PciI	ACATGT	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	175, 233
Ple19I	CGATCG	1 cut(s)	328
PleI	GAGTC	3 cut(s)	136, 257, 406
PpsI	GAGTC	3 cut(s)	136, 257, 406
PscI	ACATGT	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PvuI	CGATCG	1 cut(s)	328
SaqAI	TTAA	2 cut(s)	12, 113
SatI	GCNGC	2 cut(s)	174, 232
Sau3AI	GATC	2 cut(s)	307, 325
SchI	GAGTC	3 cut(s)	137, 258, 407
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	6 cut(s)	83, 165, 183, 285, 305, 321
SfaNI	GCATC	1 cut(s)	243
Sse9I	AATT	3 cut(s)	185, 213, 226
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	2 cut(s)	182, 284
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	3 cut(s)	131, 252, 324
TasI	AATT	3 cut(s)	185, 213, 226
Tru1I	TTAA	2 cut(s)	12, 113
Tru9I	TTAA	2 cut(s)	12, 113
TscAI	CASTG	1 cut(s)	203
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	173, 231
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	17, 108
TspRI	CASTG	1 cut(s)	203
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	2 cut(s)	182, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.