Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0019744

Physical Location & Seq

Genomic Coordinates Reverse (-)

53126016 .. 53126736

Gene Structure 721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00371540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAGGGTTTTAAGAAAAGAACCCTGAAGTGGTTCACAACCAAAAAGAAAAAATGCTTGCAATGGTTTCAGAGAACAAGGTCTGGAAAATATGAACAAGTCTCAGTCTTAAGAGAAGATCCAGAGTCGAACGAAAAAAGAGAGAAAGAAGAACCAGAGGTTTGCCTGGCTGCTGAGCTAGAATTTAGCATGCACTGTGACCATTGTGCAATTGATGTCAGAAATTGCTGCATCACAGCAAAAGGAGTCGAATATGTGGTATTTGATAAGGAGAAAAAGCTAGTGAAAGTGGAAGGAAGGTTTGATCTCAAAAAGCTTATCGATCGCCTCCGGAAGAAGGACAAGATAGTAATATTGATTGGGAAAAAAATGGAAGAAACTCAGGAACAAGACGAGTCTCGTGTTCAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0031974 GO:0031981 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0070013 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

137

Amino Acids

16.34

Weight (kDa)

9.27

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019744)

Species	Orthologous Gene IDs
malus_domestica	MD13G1122700.v1.1
prunus_persica	Prupe.1G222500_v2.0.a1
pyrus_communis	pycom16g10530
rosa_roxburghii	Rroxscaffold_5G00371540
rosa_samantha	Rh4AG294400 Rh4BG300400 Rh4DG297500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	330
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	30, 337
AflII	CTTAAG	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	3 cut(s)	178, 280, 316
AluI	AGCT	3 cut(s)	178, 280, 316
Alw26I	GTCTC	2 cut(s)	106, 402
AlwI	GGATC	1 cut(s)	113
Aor13HI	TCCGGA	1 cut(s)	330
ApeKI	GCWGC	2 cut(s)	170, 228
ApoI	RAATTY	1 cut(s)	182
Asp700I	GAANNNNTTC	1 cut(s)	32
BauI	CACGAG	1 cut(s)	399
BbvI	GCAGC	2 cut(s)	157, 215
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	2 cut(s)	106, 402
BfaI	CTAG	2 cut(s)	179, 281
BfrI	CTTAAG	1 cut(s)	109
BisI	GCNGC	2 cut(s)	171, 229
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	2 cut(s)	172, 230
Bme1390I	CCNGG	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	240
Bpu1102I	GCTNAGC	1 cut(s)	174
Bsa29I	ATCGAT	1 cut(s)	321
BsaWI	WCCGGW	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 337
Bse3DI	GCAATG	1 cut(s)	68
BseAI	TCCGGA	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	167
BseCI	ATCGAT	1 cut(s)	321
BseLI	CCNNNNNNNGG	2 cut(s)	30, 337
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	3 cut(s)	117, 165, 395
BseXI	GCAGC	2 cut(s)	157, 215
Bsh1285I	CGRYCG	1 cut(s)	325
BshVI	ATCGAT	1 cut(s)	321
BsiEI	CGRYCG	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	331
BslI	CCNNNNNNNGG	2 cut(s)	30, 337
BsmAI	GTCTC	2 cut(s)	106, 402
Bsp13I	TCCGGA	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	118, 304, 322
Bsp1720I	GCTNAGC	1 cut(s)	174
BspCNI	CTCAG	3 cut(s)	116, 166, 394
BspDI	ATCGAT	1 cut(s)	321
BspEI	TCCGGA	1 cut(s)	330
BspPI	GGATC	1 cut(s)	113
BspTI	CTTAAG	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	68
BssMI	GATC	3 cut(s)	118, 304, 322
BssSI	CACGAG	1 cut(s)	399
Bst2BI	CACGAG	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	197
BstAFI	CTTAAG	1 cut(s)	109
BstC8I	GCNNGC	2 cut(s)	59, 191
BstDEI	CTNAG	3 cut(s)	103, 174, 381
BstKTI	GATC	3 cut(s)	121, 307, 325
BstMAI	GTCTC	2 cut(s)	106, 402
BstMBI	GATC	3 cut(s)	118, 304, 322
BstMCI	CGRYCG	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	157, 215
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
Bsu15I	ATCGAT	1 cut(s)	321
BsuTUI	ATCGAT	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	59, 191
ClaI	ATCGAT	1 cut(s)	321
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	4 cut(s)	170, 178, 280, 316
CviKI_1	RGCY	4 cut(s)	170, 178, 280, 316
DdeI	CTNAG	3 cut(s)	103, 174, 381
DpnI	GATC	3 cut(s)	120, 306, 324
DpnII	GATC	3 cut(s)	118, 304, 322
Eco57I	CTGAAG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	165
FaeI	CATG	1 cut(s)	193
FaiI	YATR	3 cut(s)	93, 191, 255
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	171, 229
Fsp4HI	GCNGC	2 cut(s)	171, 229
FspBI	CTAG	2 cut(s)	179, 281
GluI	GCNGC	2 cut(s)	171, 229
HapII	CCGG	1 cut(s)	331
Hin1II	CATG	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	3 cut(s)	125, 246, 395
HpaII	CCGG	1 cut(s)	331
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	2 cut(s)	72, 221
Hpy188III	TCNNGA	4 cut(s)	84, 122, 331, 383
Hpy8I	GTNNAC	1 cut(s)	36
HpyAV	CCTTC	3 cut(s)	287, 291, 331
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4V	TGCA	4 cut(s)	61, 193, 209, 231
HpyF3I	CTNAG	3 cut(s)	103, 174, 381
Hsp92II	CATG	1 cut(s)	193
Kpn2I	TCCGGA	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	118, 304, 322
LpnPI	CCDG	8 cut(s)	38, 69, 135, 152, 168, 179, 344, 368
Lsp1109I	GCAGC	2 cut(s)	157, 215
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	2 cut(s)	179, 281
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	3 cut(s)	120, 306, 324
MboI	GATC	3 cut(s)	118, 304, 322
MboII	GAAGA	4 cut(s)	128, 161, 346, 386
MfeI	CAATTG	1 cut(s)	210
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	3 cut(s)	182, 210, 223
MlyI	GAGTC	3 cut(s)	134, 255, 404
MnlI	CCTC	2 cut(s)	151, 338
MroI	TCCGGA	1 cut(s)	330
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	2 cut(s)	12, 110
MspCI	CTTAAG	1 cut(s)	109
MspI	CCGG	1 cut(s)	331
MspR9I	CCNGG	1 cut(s)	167
MunI	CAATTG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	167
NdeII	GATC	3 cut(s)	118, 304, 322
NlaIII	CATG	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	197
NspI	RCATGY	1 cut(s)	193
PaeI	GCATGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	172, 230
Ple19I	CGATCG	1 cut(s)	325
PleI	GAGTC	3 cut(s)	133, 254, 403
PpsI	GAGTC	3 cut(s)	133, 254, 403
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	118
PvuI	CGATCG	1 cut(s)	325
SaqAI	TTAA	2 cut(s)	12, 110
SatI	GCNGC	2 cut(s)	171, 229
Sau3AI	GATC	3 cut(s)	118, 304, 322
SchI	GAGTC	3 cut(s)	134, 255, 404
ScrFI	CCNGG	1 cut(s)	167
SetI	ASST	6 cut(s)	83, 162, 180, 282, 302, 318
SfaNI	GCATC	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
SphI	GCATGC	1 cut(s)	193
Sse9I	AATT	3 cut(s)	182, 210, 223
SspI	AATATT	1 cut(s)	354
SspMI	CTAG	2 cut(s)	179, 281
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	197
TaqI	TCGA	3 cut(s)	128, 249, 321
TasI	AATT	3 cut(s)	182, 210, 223
Tru1I	TTAA	2 cut(s)	12, 110
Tru9I	TTAA	2 cut(s)	12, 110
TscAI	CASTG	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	2 cut(s)	170, 228
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	17, 108
TspRI	CASTG	1 cut(s)	200
Vha464I	CTTAAG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	182
XceI	RCATGY	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	2 cut(s)	179, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.