Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007176

Physical Location & Seq

Genomic Coordinates Forward (+)

11531856 .. 11534017

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1147400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGGCGATGGCGAGCTTGGCGCGGCGGAAGGCCTACCTTCTCTCTAGAAACTTTTCCAACACGTCATCGGAGGCCGTCAGGTACTCCTTCTCCCTCACCTCCTTCTCCAGGGGCTTCGCCTCCGCCGGATCTGACGACAACGATGTCGTCGTCGTCGGCGGCGGTCCCGGCGGCTACGTGGCGGCAATCAAGGCCGCGCAGCTCGGCCTTAAGACCACCTGCATCGAGAAGCGCGGTGCTCTCGGCGGCACCTGCCTCAACGTCGGGTGCATACCCTCCAAGGCGCTTCTTCATTCCTCTCACATGTACTATGAAGCTAAGCATGCATTTTCGCACCACGGAGTGAAGTTCTCTGATGTCGAAATAGATTTACCTGCCATGATGTCCCAGAAAGACAAAGCTGTTTCTAATCTTACACGAGGAATTGAAGGGCTGTTCAAGAAGAACAAGGTCACTTATGTTAAAGGTTATGGAAAGTTCATCTCCCCATCTGAAATTTCAGTGGACACCATTGATGGCGAGAATAAAGTTGTGAAGGGAAAGAATATCATAATTGCCACCGGTTCTGATGTCAAGTCTTTACCTGGAATTACCATTGATGAGAAGAAGATAGTGTCATCCACAGGAGCTCTGGCTTTGCAGGAAATCCCAAAGAAACTTGTGGTGGTTGGAGCAGGATATATCGGCCTAGAGATGGGCTCGGTGTGGGGCAGACTTGGTTCTGAGGTAACTGTTGTTGAGTTTGGTCCTGATATCGTCCCATCAATGGACTCGGAAATCCGCAAGCAATTTCAGCGTTCCCTTGAGAAGCAAGGGATGAAGTTCATGCTCAAAACAAAGGTGGTTGGAGTTGATACCTCTGGAGATGGTGTGAAGTTGACCCTTGAACCAGCATCCGGTGGCGACCAGACTTCCTTTGAAGCAGATGTCGTTCTTGTATCTGCTGGTAGGGTTCCATTCACATCCGGACTTGATTTGGACAAGATAGGAGTTGAAATGGACAAGGGAGGGAGAATTTTAGTGAATGAGAGGTTTTCTACAAATGTCTCGGGTGTTTATGCAATCGGAGATGTTATTCCTGGACCTATGTTGGCTCATAAGGCAGAAGAGGATGGGGTTGCATGCGTGGAGTTTCTAGCTGGTAAGGTTGGCCATGTGGACTATGACAAGGTCCCTGGGGTCGTCTACACGCACCCTGAGGTCGCATCTGTTGGAAAGACTGAGGAACAAGTGAAGGCCTCTGGCATTGCATACCGAGTTGGAAAGTTCCCCTTCATGGCAAACAGCAGAGCCAAGGCAATAGACAATGCTGAAGGACTCGTCAAAATATTGGCCGAGAAGGAAACAGATAAGATATTGGGAGTTCATATCATGGCATCCAATGCCGGAGAGCTCATTCACGAGGCGGCCATAGCCTTGCAGTATGATGCATCGAGCGAGGACATTGCACGAGTTTGCCATGCACATCCGACCATGAGCGAGGCGTTGAAGGAAGCTGCCATGGCTACTTATGACAAGCCCATTCATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004148 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005759 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009507 GO:0009536 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0017076 GO:0019866 GO:0030554 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0050897 GO:0055114 GO:0070013 GO:0070469 GO:0097159 GO:0097367 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901265 GO:1901363 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00260 ko00280 ko00620 ko00630 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00260 map00280 map00620 map00630 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Pyr_redox_2 Pyr_redox_dim

Protein Analysis

511

Amino Acids

54.18

Weight (kDa)

6.69

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	48 - 372	1.5e-76	Pyridine nucleotide-disulphide oxidoreductase
FAD_oxidored	PF12831	48 - 86	6.4e-11	FAD dependent oxidoreductase
GIDA	PF01134	48 - 193	4e-10	Glucose inhibited division protein A
FAD_binding_2	PF00890	48 - 84	1e-06	FAD binding domain
Pyr_redox_3	PF13738	171 - 356	1.4e-09	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	219 - 295	2.6e-23	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim	PF02852	391 - 500	1.5e-41	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48030 AT1G48030 AT1G48030 AT1G48030 AT1G48030 AT3G17240 AT3G17240
fragaria_vesca	FvH4_4g20900
malus_domestica	MD13G1147400.v1.1 MD16G1145800.v1.1
prunus_persica	Prupe.1G110900_v2.0.a1 Prupe.1G110900_v2.0.a1
pyrus_communis	pycom13g12690 pycom16g12500
rosa_chinensis	RchiOBHm_Chr4g0426331
rosa_laevigata	RLG00000007302
rosa_multiflora	Rmu_sc0000730.1_g000046 Rmu_sc0007942.1_g000011
rosa_roxburghii	Rroxscaffold_5G00368340
rosa_rugosa	Rorug04G0210200
rosa_samantha	Rh4AG267200 Rh4BG273100 Rh4CG287300 Rh4DG269800
rosa_wichuraiana	Rw4G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	227, 260
AasI	GACNNNNNNGTC	1 cut(s)	143
Acc36I	ACCTGC	3 cut(s)	227, 260, 382
AccB1I	GGYRCC	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	1185
AccII	CGCG	3 cut(s)	22, 197, 234
AccIII	TCCGGA	1 cut(s)	965
AclWI	GGATC	1 cut(s)	136
AcoI	YGGCCR	3 cut(s)	1150, 1332, 1407
AcsI	RAATTY	2 cut(s)	495, 1014
AcuI	CTGAAG	1 cut(s)	1332
AdeI	CACNNNGTG	1 cut(s)	343
AfaI	GTAC	2 cut(s)	83, 308
AfiI	CCNNNNNNNGG	5 cut(s)	108, 694, 766, 896, 1276
AflII	CTTAAG	1 cut(s)	209
AflIII	ACRYGT	2 cut(s)	60, 303
AgeI	ACCGGT	1 cut(s)	560
AgsI	TTSAA	6 cut(s)	428, 439, 887, 920, 995, 1489
AjiI	CACGTC	1 cut(s)	63
AjnI	CCWGG	4 cut(s)	107, 583, 1078, 1174
AluBI	AGCT	8 cut(s)	15, 202, 317, 401, 629, 1139, 1393, 1496
AluI	AGCT	8 cut(s)	15, 202, 317, 401, 629, 1139, 1393, 1496
Alw21I	GWGCWC	3 cut(s)	241, 631, 1395
Alw26I	GTCTC	1 cut(s)	1051
AlwI	GGATC	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	1048
Aor13HI	TCCGGA	1 cut(s)	965
AoxI	GGCC	9 cut(s)	30, 72, 192, 205, 685, 1150, 1236, 1332, 1407
ApeKI	GCWGC	2 cut(s)	199, 1496
ApoI	RAATTY	2 cut(s)	495, 1014
AsiGI	ACCGGT	1 cut(s)	560
Asp700I	GAANNNNTTC	1 cut(s)	52
AspLEI	GCGC	4 cut(s)	22, 199, 234, 286
AspS9I	GGNCC	4 cut(s)	164, 746, 1082, 1171
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	1048
AvaII	GGWCC	4 cut(s)	164, 746, 1082, 1171
AxyI	CCTNAGG	1 cut(s)	1197
BalI	TGGCCA	1 cut(s)	1152
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	3 cut(s)	631, 701, 1395
BauI	CACGAG	3 cut(s)	417, 1400, 1449
Bbv12I	GWGCWC	3 cut(s)	241, 631, 1395
BbvI	GCAGC	2 cut(s)	211, 1483
BccI	CCATC	6 cut(s)	496, 509, 688, 769, 860, 1106
BceAI	ACGGC	1 cut(s)	59
BcgI	CGANNNNNNTGC	2 cut(s)	1427, 1461
BciT130I	CCWGG	4 cut(s)	109, 585, 1080, 1176
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	1051
BfaI	CTAG	4 cut(s)	45, 689, 1136, 1531
BfoI	RGCGCY	1 cut(s)	287
BfrI	CTTAAG	1 cut(s)	209
BfuAI	ACCTGC	3 cut(s)	227, 260, 382
BisI	GCNGC	9 cut(s)	23, 160, 172, 183, 195, 200, 247, 1407, 1497
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	9 cut(s)	24, 161, 173, 184, 196, 201, 248, 1408, 1498
Bme1390I	CCNGG	5 cut(s)	109, 168, 585, 1080, 1176
Bme18I	GGWCC	4 cut(s)	164, 746, 1082, 1171
BmeT110I	CYCGRG	1 cut(s)	1048
BmgBI	CACGTC	1 cut(s)	63
BmgT120I	GGNCC	4 cut(s)	164, 746, 1082, 1171
BmiI	GGNNCC	4 cut(s)	166, 250, 954, 1173
BmrFI	CCNGG	5 cut(s)	109, 168, 585, 1080, 1176
BmsI	GCATC	6 cut(s)	231, 902, 1214, 1385, 1417, 1439
BplI	GAGNNNNNCTC	2 cut(s)	683, 715
BpmI	CTGGAG	2 cut(s)	91, 882
Bpu1102I	GCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	824
BpuMI	CCSGG	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	178
BsaJI	CCNNGG	7 cut(s)	108, 279, 337, 1174, 1175, 1293, 1500
BsaWI	WCCGGW	3 cut(s)	560, 896, 965
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 855, 885
Bsc4I	CCNNNNNNNGG	5 cut(s)	108, 694, 766, 896, 1276
Bse118I	RCCGGY	1 cut(s)	560
Bse21I	CCTNAGG	1 cut(s)	1197
Bse3DI	GCAATG	2 cut(s)	1245, 1443
BseAI	TCCGGA	1 cut(s)	965
BseBI	CCWGG	4 cut(s)	109, 585, 1080, 1176
BseDI	CCNNGG	7 cut(s)	108, 279, 337, 1174, 1175, 1293, 1500
BseGI	GGATG	7 cut(s)	617, 822, 893, 962, 1117, 1376, 1465
BseLI	CCNNNNNNNGG	5 cut(s)	108, 694, 766, 896, 1276
BseMI	GCAATG	2 cut(s)	1245, 1443
BseMII	CTCAG	3 cut(s)	714, 1188, 1212
BseXI	GCAGC	2 cut(s)	211, 1483
Bsh1236I	CGCG	3 cut(s)	22, 197, 234
BshFI	GGCC	9 cut(s)	32, 74, 194, 207, 687, 1152, 1238, 1334, 1409
BshNI	GGYRCC	1 cut(s)	248
BshTI	ACCGGT	1 cut(s)	560
BsiHKAI	GWGCWC	3 cut(s)	241, 631, 1395
BsiHKCI	CYCGRG	1 cut(s)	1048
BsiSI	CCGG	6 cut(s)	126, 168, 561, 897, 966, 1386
BslFI	GGGAC	4 cut(s)	150, 370, 743, 1157
BslI	CCNNNNNNNGG	5 cut(s)	108, 694, 766, 896, 1276
BsmAI	GTCTC	1 cut(s)	1051
BsmFI	GGGAC	4 cut(s)	150, 370, 743, 1157
BsnI	GGCC	9 cut(s)	32, 74, 194, 207, 687, 1152, 1238, 1334, 1409
BsoBI	CYCGRG	1 cut(s)	1048
Bsp1286I	GDGCHC	4 cut(s)	241, 631, 701, 1395
Bsp13I	TCCGGA	1 cut(s)	965
Bsp143I	GATC	1 cut(s)	128
Bsp1720I	GCTNAGC	1 cut(s)	318
Bsp19I	CCATGG	1 cut(s)	1500
BspANI	GGCC	9 cut(s)	32, 74, 194, 207, 687, 1152, 1238, 1334, 1409
BspCNI	CTCAG	3 cut(s)	715, 1189, 1213
BspEI	TCCGGA	1 cut(s)	965
BspFNI	CGCG	3 cut(s)	22, 197, 234
BspLI	GGNNCC	4 cut(s)	166, 250, 954, 1173
BspMI	ACCTGC	3 cut(s)	227, 260, 382
BspPI	GGATC	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	248
BspTI	CTTAAG	1 cut(s)	209
BsrDI	GCAATG	2 cut(s)	1245, 1443
BsrFI	RCCGGY	1 cut(s)	560
BssAI	RCCGGY	1 cut(s)	560
BssECI	CCNNGG	7 cut(s)	108, 279, 337, 1174, 1175, 1293, 1500
BssMI	GATC	1 cut(s)	128
BssSI	CACGAG	3 cut(s)	417, 1400, 1449
BssT1I	CCWWGG	3 cut(s)	279, 1293, 1500
Bst2BI	CACGAG	3 cut(s)	417, 1400, 1449
Bst2UI	CCWGG	4 cut(s)	109, 585, 1080, 1176
Bst4CI	ACNGT	1 cut(s)	733
Bst6I	CTCTTC	1 cut(s)	1101
BstAFI	CTTAAG	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	1382
BstBAI	YACGTR	1 cut(s)	178
BstC8I	GCNNGC	4 cut(s)	13, 324, 785, 1123
BstDEI	CTNAG	4 cut(s)	318, 723, 1197, 1221
BstDSI	CCRYGG	2 cut(s)	337, 1500
BstENI	CCTNNNNNAGG	1 cut(s)	106
BstF5I	GGATG	7 cut(s)	617, 822, 893, 962, 1117, 1376, 1465
BstFNI	CGCG	3 cut(s)	22, 197, 234
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	4 cut(s)	22, 199, 234, 286
BstKTI	GATC	1 cut(s)	131
BstMAI	GTCTC	1 cut(s)	1051
BstMBI	GATC	1 cut(s)	128
BstNI	CCWGG	4 cut(s)	109, 585, 1080, 1176
BstNSI	RCATGY	3 cut(s)	307, 326, 1125
BstSCI	CCNGG	5 cut(s)	107, 166, 583, 1078, 1174
BstUI	CGCG	3 cut(s)	22, 197, 234
BstV1I	GCAGC	2 cut(s)	211, 1483
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
Bsu36I	CCTNAGG	1 cut(s)	1197
BsuRI	GGCC	9 cut(s)	32, 74, 194, 207, 687, 1152, 1238, 1334, 1409
BtgI	CCRYGG	2 cut(s)	337, 1500
BtgZI	GCGATG	1 cut(s)	20
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	7 cut(s)	617, 822, 893, 962, 1117, 1376, 1465
BtsIMutI	CAGTG	1 cut(s)	507
BveI	ACCTGC	3 cut(s)	227, 260, 382
Cac8I	GCNNGC	4 cut(s)	13, 324, 785, 1123
CfoI	GCGC	4 cut(s)	22, 199, 234, 286
Cfr10I	RCCGGY	1 cut(s)	560
Cfr13I	GGNCC	4 cut(s)	164, 746, 1082, 1171
Csp6I	GTAC	2 cut(s)	82, 307
CspAI	ACCGGT	1 cut(s)	560
CviQI	GTAC	2 cut(s)	82, 307
DdeI	CTNAG	4 cut(s)	318, 723, 1197, 1221
DpnI	GATC	1 cut(s)	130
DpnII	GATC	1 cut(s)	128
DraIII	CACNNNGTG	1 cut(s)	343
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
EaeI	YGGCCR	3 cut(s)	1150, 1332, 1407
Eam1104I	CTCTTC	1 cut(s)	1101
EarI	CTCTTC	1 cut(s)	1101
EciI	GGCGGA	2 cut(s)	40, 112
Ecl136II	GAGCTC	2 cut(s)	629, 1393
Eco130I	CCWWGG	3 cut(s)	279, 1293, 1500
Eco147I	AGGCCT	2 cut(s)	32, 1238
Eco24I	GRGCYC	3 cut(s)	631, 701, 1395
Eco32I	GATATC	1 cut(s)	754
Eco47I	GGWCC	4 cut(s)	164, 746, 1082, 1171
Eco53kI	GAGCTC	2 cut(s)	629, 1393
Eco57I	CTGAAG	1 cut(s)	1332
Eco81I	CCTNAGG	1 cut(s)	1197
Eco88I	CYCGRG	1 cut(s)	1048
EcoICRI	GAGCTC	2 cut(s)	629, 1393
EcoNI	CCTNNNNNAGG	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	1171
EcoRII	CCWGG	4 cut(s)	107, 583, 1078, 1174
EcoRV	GATATC	1 cut(s)	754
EcoT14I	CCWWGG	3 cut(s)	279, 1293, 1500
EcoT22I	ATGCAT	2 cut(s)	328, 1432
EcoT38I	GRGCYC	3 cut(s)	631, 701, 1395
ErhI	CCWWGG	3 cut(s)	279, 1293, 1500
FalI	AAGNNNNNCTT	2 cut(s)	1256, 1288
FaqI	GGGAC	4 cut(s)	150, 370, 743, 1157
FblI	GTMKAC	1 cut(s)	1185
Fnu4HI	GCNGC	9 cut(s)	23, 160, 172, 183, 195, 200, 247, 1407, 1497
FokI	GGATG	7 cut(s)	604, 829, 880, 949, 1124, 1363, 1452
FriOI	GRGCYC	3 cut(s)	631, 701, 1395
Fsp4HI	GCNGC	9 cut(s)	23, 160, 172, 183, 195, 200, 247, 1407, 1497
FspBI	CTAG	4 cut(s)	45, 689, 1136, 1531
GlaI	GCGC	4 cut(s)	21, 198, 233, 285
GluI	GCNGC	9 cut(s)	23, 160, 172, 183, 195, 200, 247, 1407, 1497
GsuI	CTGGAG	2 cut(s)	91, 882
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	9 cut(s)	32, 74, 194, 207, 687, 1152, 1238, 1334, 1409
HapII	CCGG	6 cut(s)	126, 168, 561, 897, 966, 1386
HhaI	GCGC	4 cut(s)	22, 199, 234, 286
Hin6I	GCGC	4 cut(s)	20, 197, 232, 284
HinP1I	GCGC	4 cut(s)	20, 197, 232, 284
HincII	GTYRAC	1 cut(s)	879
HindII	GTYRAC	1 cut(s)	879
HinfI	GANTC	2 cut(s)	770, 1317
HpaII	CCGG	6 cut(s)	126, 168, 561, 897, 966, 1386
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	4 cut(s)	505, 879, 1159, 1186
Hpy188I	TCNGA	9 cut(s)	70, 133, 355, 493, 568, 724, 775, 1067, 1470
Hpy188III	TCNNGA	7 cut(s)	45, 226, 439, 749, 861, 966, 1400
Hpy8I	GTNNAC	4 cut(s)	505, 879, 1159, 1186
Hpy99I	CGWCG	4 cut(s)	152, 155, 158, 266
HpyCH4III	ACNGT	1 cut(s)	733
HpyCH4IV	ACGT	3 cut(s)	62, 177, 261
HpyF3I	CTNAG	4 cut(s)	318, 723, 1197, 1221
HpySE526I	ACGT	3 cut(s)	62, 177, 261
HspAI	GCGC	4 cut(s)	20, 197, 232, 284
Kpn2I	TCCGGA	1 cut(s)	965
Kzo9I	GATC	1 cut(s)	128
LmnI	GCTCC	2 cut(s)	626, 671
Lsp1109I	GCAGC	2 cut(s)	211, 1483
LweI	GCATC	6 cut(s)	231, 902, 1214, 1385, 1417, 1439
MaeI	CTAG	4 cut(s)	45, 689, 1136, 1531
MaeII	ACGT	3 cut(s)	62, 177, 261
MaeIII	GTNAC	2 cut(s)	451, 727
MalI	GATC	1 cut(s)	130
MboI	GATC	1 cut(s)	128
MboII	GAAGA	5 cut(s)	281, 454, 616, 619, 1118
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	4 cut(s)	241, 631, 701, 1395
MlsI	TGGCCA	1 cut(s)	1152
MluCI	AATT	6 cut(s)	423, 495, 552, 588, 788, 1014
MluNI	TGGCCA	1 cut(s)	1152
MlyI	GAGTC	2 cut(s)	764, 1311
MmeI	TCCRAC	6 cut(s)	81, 649, 826, 1192, 1240, 1493
Mox20I	TGGCCA	1 cut(s)	1152
Mph1103I	ATGCAT	2 cut(s)	328, 1432
MroI	TCCGGA	1 cut(s)	965
MroXI	GAANNNNTTC	1 cut(s)	52
MscI	TGGCCA	1 cut(s)	1152
MseI	TTAA	2 cut(s)	210, 462
Msp20I	TGGCCA	1 cut(s)	1152
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	6 cut(s)	126, 168, 561, 897, 966, 1386
MspR9I	CCNGG	5 cut(s)	109, 168, 585, 1080, 1176
MvaI	CCWGG	4 cut(s)	109, 585, 1080, 1176
MvnI	CGCG	3 cut(s)	22, 197, 234
NciI	CCSGG	1 cut(s)	168
NcoI	CCATGG	1 cut(s)	1500
NdeII	GATC	1 cut(s)	128
NlaIV	GGNNCC	4 cut(s)	166, 250, 954, 1173
NmeAIII	GCCGAG	3 cut(s)	183, 222, 1360
NmuCI	GTSAC	1 cut(s)	451
NsiI	ATGCAT	2 cut(s)	328, 1432
NspI	RCATGY	3 cut(s)	307, 326, 1125
PaeI	GCATGC	2 cut(s)	326, 1125
PaqCI	CACCTGC	2 cut(s)	227, 260
PasI	CCCWGGG	1 cut(s)	1175
PceI	AGGCCT	2 cut(s)	32, 1238
PciI	ACATGT	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	52
PflFI	GACNNNGTC	1 cut(s)	1169
PfoI	TCCNGGA	1 cut(s)	1078
PinAI	ACCGGT	1 cut(s)	560
PkrI	GCNGC	9 cut(s)	24, 161, 173, 184, 196, 201, 248, 1408, 1498
PleI	GAGTC	2 cut(s)	764, 1311
PpsI	GAGTC	2 cut(s)	764, 1311
Ppu21I	YACGTR	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	1171
PscI	ACATGT	1 cut(s)	303
Psp124BI	GAGCTC	2 cut(s)	631, 1395
Psp5II	RGGWCCY	1 cut(s)	1171
Psp6I	CCWGG	4 cut(s)	107, 583, 1078, 1174
PspGI	CCWGG	4 cut(s)	107, 583, 1078, 1174
PspN4I	GGNNCC	4 cut(s)	166, 250, 954, 1173
PspPI	GGNCC	4 cut(s)	164, 746, 1082, 1171
PspPPI	RGGWCCY	1 cut(s)	1171
PsuI	RGATCY	1 cut(s)	128
PsyI	GACNNNGTC	1 cut(s)	1169
RsaI	GTAC	2 cut(s)	83, 308
RsaNI	GTAC	2 cut(s)	82, 307
SacI	GAGCTC	2 cut(s)	631, 1395
SaqAI	TTAA	2 cut(s)	210, 462
SatI	GCNGC	9 cut(s)	23, 160, 172, 183, 195, 200, 247, 1407, 1497
Sau3AI	GATC	1 cut(s)	128
Sau96I	GGNCC	4 cut(s)	164, 746, 1082, 1171
SchI	GAGTC	2 cut(s)	764, 1311
ScrFI	CCNGG	5 cut(s)	109, 168, 585, 1080, 1176
SduI	GDGCHC	4 cut(s)	241, 631, 701, 1395
SfaNI	GCATC	6 cut(s)	231, 902, 1214, 1385, 1417, 1439
SinI	GGWCC	4 cut(s)	164, 746, 1082, 1171
SmlI	CTYRAG	2 cut(s)	209, 803
SmoI	CTYRAG	2 cut(s)	209, 803
SphI	GCATGC	2 cut(s)	326, 1125
Sse9I	AATT	6 cut(s)	423, 495, 552, 588, 788, 1014
SseBI	AGGCCT	2 cut(s)	32, 1238
SspI	AATATT	1 cut(s)	1329
SspMI	CTAG	4 cut(s)	45, 689, 1136, 1531
SstI	GAGCTC	2 cut(s)	631, 1395
StuI	AGGCCT	2 cut(s)	32, 1238
StyD4I	CCNGG	5 cut(s)	107, 166, 583, 1078, 1174
StyI	CCWWGG	3 cut(s)	279, 1293, 1500
TaaI	ACNGT	1 cut(s)	733
TaiI	ACGT	3 cut(s)	65, 180, 264
TaqI	TCGA	3 cut(s)	225, 360, 1433
TasI	AATT	6 cut(s)	423, 495, 552, 588, 788, 1014
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	7 cut(s)	25, 162, 174, 185, 197, 249, 1409
Tru1I	TTAA	2 cut(s)	210, 462
Tru9I	TTAA	2 cut(s)	210, 462
TscAI	CASTG	1 cut(s)	507
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	2 cut(s)	199, 1496
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	8 cut(s)	281, 327, 469, 814, 833, 1264, 1355, 1514
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	1 cut(s)	507
Tth111I	GACNNNGTC	1 cut(s)	1169
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	4 cut(s)	164, 746, 1082, 1171
XagI	CCTNNNNNAGG	1 cut(s)	106
XapI	RAATTY	2 cut(s)	495, 1014
XbaI	TCTAGA	1 cut(s)	44
XceI	RCATGY	3 cut(s)	307, 326, 1125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	628
XmiI	GTMKAC	1 cut(s)	1185
XmnI	GAANNNNTTC	1 cut(s)	52
XspI	CTAG	4 cut(s)	45, 689, 1136, 1531
Zsp2I	ATGCAT	2 cut(s)	328, 1432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.