Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007176

Physical Location & Seq

Genomic Coordinates Forward (+)

36615567 .. 36619563

Gene Structure 3997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0210200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTACTTTGGTGTGTATCAGGACTTGAACAACTTTGAAAGTGATCCGGAGGAGTTTGCTAAAACCTTGTGTGCATATTTAGGTGTTCATGACCCTGAAGATGTTGTAAGTCGCTGCATTCTATATCATTCTTGTTTAACAAATGCAATTTTTTTTTTCATTAGTAAATGCAAGGCGTTTTGGTTAAGGCTTTTGGTATGTGTCAAAGTTGGAACCTTGATCACTTTTCAGTGTGCTAAAAGAAGTCATTCTTATTGCAGCCTGCTATTGCTTTTGCAATTAGAGAACAGCTGTATGAGTGATTTTGCTTACAACTATCTTAGTGGTACAATACTAAAGGAATGGGCTTCAAGCTTGCAATATGTGGGGGGTGCTGCGCTACTCACTGATGTTGTATTTTGGCTCATTGTGTATTCATTTCTAACGAGCAAAGATTACAAACTGAACTTTATGATGGTCGGTATGTACTCATTTAATCTTGTTTTCTTCCTAGGAGAGTGGAAGGACATTGTGAACAATGGCATCAAAATACATAATGCTGAAGTCAAAAGGCAGGGCCGAAAACCAACTACGTGGAAAACTGTGCGGTATGTTTATGGAACATTCTTATCCTCCACTTATTATTTCCTTCATGGTATTCCAGTGCAACAAAGCAGCACAGACTGTGGCTATTTCATAATGAGATACATGAAGGACATCGTGGAGGATAAGAACTTGGAGTTTTTCAGCAAGTGGGAGAAAAAAGGGAAAGCAGCATATACCCAGCAGCATATTGATGAAGTCAGAAACGAGTGGGCAAAATTTGTTGTTAAAACATATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004148 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005759 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009507 GO:0009536 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0017076 GO:0019866 GO:0030554 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0050897 GO:0055114 GO:0070013 GO:0070469 GO:0097159 GO:0097367 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901265 GO:1901363 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00260 ko00280 ko00620 ko00630 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00260 map00280 map00620 map00630 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Pyr_redox_2 Pyr_redox_dim

Protein Analysis

274

Amino Acids

32.03

Weight (kDa)

8.45

Isoelectric Point (pI)

31.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48030 AT1G48030 AT1G48030 AT1G48030 AT1G48030 AT3G17240 AT3G17240
fragaria_vesca	FvH4_4g20900
malus_domestica	MD13G1147400.v1.1 MD16G1145800.v1.1
prunus_persica	Prupe.1G110900_v2.0.a1 Prupe.1G110900_v2.0.a1
pyrus_communis	pycom13g12690 pycom16g12500
rosa_chinensis	RchiOBHm_Chr4g0426331
rosa_laevigata	RLG00000007302
rosa_multiflora	Rmu_sc0000730.1_g000046 Rmu_sc0007942.1_g000011
rosa_roxburghii	Rroxscaffold_5G00368340
rosa_rugosa	Rorug04G0210200
rosa_samantha	Rh4AG267200 Rh4BG273100 Rh4CG287300 Rh4DG269800
rosa_wichuraiana	Rw4G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	1 cut(s)	586
AclWI	GGATC	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	800
AcuI	CTGAAG	2 cut(s)	117, 561
AfaI	GTAC	3 cut(s)	5, 328, 467
AgsI	TTSAA	3 cut(s)	28, 38, 351
AluBI	AGCT	2 cut(s)	291, 354
AluI	AGCT	2 cut(s)	291, 354
AlwI	GGATC	1 cut(s)	38
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	1 cut(s)	556
ApeKI	GCWGC	6 cut(s)	114, 258, 374, 654, 752, 766
ApoI	RAATTY	1 cut(s)	800
Asp700I	GAANNNNTTC	1 cut(s)	247
AspA2I	CCTAGG	1 cut(s)	490
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	556
AvrII	CCTAGG	1 cut(s)	490
BbvI	GCAGC	6 cut(s)	101, 270, 361, 666, 764, 778
BccI	CCATC	1 cut(s)	448
BclI	TGATCA	1 cut(s)	219
BfaI	CTAG	1 cut(s)	491
BisI	GCNGC	6 cut(s)	115, 259, 375, 655, 753, 767
BlnI	CCTAGG	1 cut(s)	490
BlsI	GCNGC	6 cut(s)	116, 260, 376, 656, 754, 768
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	1 cut(s)	214
BmsI	GCATC	1 cut(s)	531
BsaAI	YACGTR	1 cut(s)	573
BsaJI	CCNNGG	1 cut(s)	490
BsaWI	WCCGGW	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	641
BseAI	TCCGGA	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	490
BseNI	ACTGG	1 cut(s)	641
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	6 cut(s)	101, 270, 361, 666, 764, 778
BseYI	CCCAGC	1 cut(s)	762
BshFI	GGCC	1 cut(s)	558
BsiSI	CCGG	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	558
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	2 cut(s)	43, 219
BspACI	CCGC	1 cut(s)	586
BspANI	GGCC	1 cut(s)	558
BspEI	TCCGGA	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	641
BssECI	CCNNGG	1 cut(s)	490
BssMI	GATC	2 cut(s)	43, 219
BssT1I	CCWWGG	1 cut(s)	490
Bst4CI	ACNGT	2 cut(s)	583, 665
BstBAI	YACGTR	1 cut(s)	573
BstC8I	GCNNGC	2 cut(s)	263, 356
BstDEI	CTNAG	1 cut(s)	320
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	2 cut(s)	46, 222
BstMBI	GATC	2 cut(s)	43, 219
BstV1I	GCAGC	6 cut(s)	101, 270, 361, 666, 764, 778
BstXI	CCANNNNNNTGG	1 cut(s)	573
BsuRI	GGCC	1 cut(s)	558
BtsIMutI	CAGTG	3 cut(s)	236, 384, 648
Cac8I	GCNNGC	2 cut(s)	263, 356
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	556
Csp6I	GTAC	3 cut(s)	4, 327, 466
CviAII	CATG	3 cut(s)	89, 632, 688
CviJI	RGCY	8 cut(s)	190, 261, 291, 347, 354, 403, 558, 669
CviKI_1	RGCY	8 cut(s)	190, 261, 291, 347, 354, 403, 558, 669
CviQI	GTAC	3 cut(s)	4, 327, 466
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	2 cut(s)	45, 221
DpnII	GATC	2 cut(s)	43, 219
Eco130I	CCWWGG	1 cut(s)	490
Eco57I	CTGAAG	2 cut(s)	117, 561
EcoT14I	CCWWGG	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	3 cut(s)	92, 635, 691
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FatI	CATG	3 cut(s)	88, 631, 687
FbaI	TGATCA	1 cut(s)	219
Fnu4HI	GCNGC	6 cut(s)	115, 259, 375, 655, 753, 767
Fsp4HI	GCNGC	6 cut(s)	115, 259, 375, 655, 753, 767
FspBI	CTAG	1 cut(s)	491
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	6 cut(s)	115, 259, 375, 655, 753, 767
GsaI	CCCAGC	1 cut(s)	766
HaeIII	GGCC	1 cut(s)	558
HapII	CCGG	1 cut(s)	47
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	3 cut(s)	92, 635, 691
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HindIII	AAGCTT	1 cut(s)	352
HpaII	CCGG	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	1 cut(s)	785
Hpy188III	TCNNGA	3 cut(s)	20, 47, 89
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	3 cut(s)	496, 638, 685
HpyCH4III	ACNGT	2 cut(s)	583, 665
HpyCH4IV	ACGT	1 cut(s)	572
HpyCH4V	TGCA	8 cut(s)	74, 117, 146, 171, 258, 277, 358, 646
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	572
Hsp92II	CATG	3 cut(s)	92, 635, 691
HspAI	GCGC	1 cut(s)	377
Kpn2I	TCCGGA	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	43, 219
LpnPI	CCDG	7 cut(s)	5, 60, 108, 275, 539, 654, 776
Lsp1109I	GCAGC	6 cut(s)	101, 270, 361, 666, 764, 778
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	572
MalI	GATC	2 cut(s)	45, 221
MboI	GATC	2 cut(s)	43, 219
MboII	GAAGA	2 cut(s)	110, 478
MluCI	AATT	3 cut(s)	147, 278, 800
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	3 cut(s)	43, 622, 697
MroI	TCCGGA	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	247
MseI	TTAA	4 cut(s)	137, 185, 474, 810
MslI	CAYNNNNRTG	1 cut(s)	774
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	117
NdeII	GATC	2 cut(s)	43, 219
NlaIII	CATG	3 cut(s)	92, 635, 691
NlaIV	GGNNCC	1 cut(s)	214
PagI	TCATGA	1 cut(s)	88
PctI	GAATGC	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	247
PkrI	GCNGC	6 cut(s)	116, 260, 376, 656, 754, 768
Ppu21I	YACGTR	1 cut(s)	573
PspFI	CCCAGC	1 cut(s)	762
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	556
PvuII	CAGCTG	1 cut(s)	291
RsaI	GTAC	3 cut(s)	5, 328, 467
RsaNI	GTAC	3 cut(s)	4, 327, 466
RseI	CAYNNNNRTG	1 cut(s)	774
SaqAI	TTAA	4 cut(s)	137, 185, 474, 810
SatI	GCNGC	6 cut(s)	115, 259, 375, 655, 753, 767
Sau3AI	GATC	2 cut(s)	43, 219
Sau96I	GGNCC	1 cut(s)	556
SetI	ASST	6 cut(s)	68, 85, 218, 293, 356, 575
SfaNI	GCATC	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	774
Sse9I	AATT	3 cut(s)	147, 278, 800
SsiI	CCGC	1 cut(s)	586
SspMI	CTAG	1 cut(s)	491
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	2 cut(s)	583, 665
TaiI	ACGT	1 cut(s)	575
TasI	AATT	3 cut(s)	147, 278, 800
TatI	WGTACW	2 cut(s)	3, 465
Tru1I	TTAA	4 cut(s)	137, 185, 474, 810
Tru9I	TTAA	4 cut(s)	137, 185, 474, 810
TscAI	CASTG	3 cut(s)	236, 391, 648
TseI	GCWGC	6 cut(s)	114, 258, 374, 654, 752, 766
TspDTI	ATGAA	7 cut(s)	77, 148, 405, 620, 664, 704, 792
TspRI	CASTG	3 cut(s)	236, 391, 648
XapI	RAATTY	1 cut(s)	800
XmaJI	CCTAGG	1 cut(s)	490
XmnI	GAANNNNTTC	1 cut(s)	247
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.