Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007176

Physical Location & Seq

Genomic Coordinates Reverse (-)

49015092 .. 49017057

Gene Structure 1966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG269800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGGCCATGGCAAGCTTTGCTCGGCGGAAGGCCTACCTTCTATCTAGAAACTTGTCCAACACGTCGTCGGAGGCCGTCCGCTACTCCTTCTCCATCACCTCCTTCTCCCGCGGCTTCGCTTCCTCGGGATCTGACGACAACGACGTCGTCGTCATCGGCGGCGGACCCGGAGGCTACGTCGCCGCCATCAAGGCCGCCCAGCTCGGCCTCAAGACCACCTGCATCGAGAAGCGCGGTGCTCTCGGCGGCACCTGCCTCAACGTCGGCTGCATACCCTCCAAGGCGCTTCTTCATTCGTCTCACATGTACCATGAAGCTCTGCATTCATTTAAAAGTCATGGTGTTAAGTTCGACAATGTTCAGATCGATTTGCCTGCCATGATGTCCCAGAAAGACAAAGCCGTGTCTAATCTGACTAAAGGAATCGAAGGTCTGTTCAAGAAGAATAAGGTGACTTATGTTAAAGGCTATGGAAAGTTCGTCTCCCCCAATGAAGTTTCAGTGGACACCATTGATGGCGGGAATACGGTTGTGAAAGGAAAAAATATTATCATTGCCACAGGTTCTGATGTCAAATCTTTGCCCGGGGTTACCATTGATGAGAAGAAAATAGTATCATCAACTGGTGCTTTGGCTCTGTCAGAAATCCCAAAGAAACTTGTGGTTGTTGGAGCAGGATATATTGGCCTTGAGATGGGCTCAGTCTGGGGAAGACTTGGTTCTGAGATAACTGTTGTTGAGTTTGGACCTGATATTGTCCCATCAATGGATTCGGAAATCCGCAAGCAATTCCAGCGTTCCCTTGAGAAGCAAGGGATGAAATTTGTACTCAAAACAAAAGTGGTAGGAGTCGATACTTCTGGAGATGGTGTGAAGTTGACCCTTGAACCAGCAGCTGGTGGTGAGCAGACCACACTTGAAGCTGATGTTGTTCTTGTATCCGCTGGCAGGAATCCATTCACATCTGGGCTCGATCTGGACAAGATAGGAGTTGAAACTGACAAGATGGGGAGAATTTTAGTGAATGAAAGGTTTGTAACAAATGTTCCAAGTGTACATGCAATTGGTGATGTTATTCCTGGACCTATGCTCGCTCACAAGGCAGAAGAGGATGGGGTTGCATGTGTGGAGTTCATCGCCGGTAAGGTTGGCCATGTGGACTATGACAAGGTTCCTGGGGTTGTCTATACTCACCCTGAGGTTGCGTCTGTTGGAAAGACCGAGGAGCAAGTGAAGGCCCTAGGCGTCGAATACCGAGTTGGAAAGTTCCCATTCTTGGCAAACAGCAGAGCCAAGGCAATAGATGATGCTGAAGGACTAGTCAAGATTTTGGCTGAGAAAGAAACAGATAAGATCTTGGGAGTTCACATCATGGCACCCAATGCAGGAGAGCTCATTCACGAGGCAGCCATAGCATTGCAGTATGATGCATCAAGTGAGGACATTGCTCGCGTTTGCCATGCACATCCAACCATGAGCGAGGCCTTGAAGGAAGCTGCCATGGCGACTTATGACAAGGCCATTCACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004148 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005759 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009507 GO:0009536 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0017076 GO:0019866 GO:0030554 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0050897 GO:0055114 GO:0070013 GO:0070469 GO:0097159 GO:0097367 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901265 GO:1901363 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00260 ko00280 ko00620 ko00630 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00260 map00280 map00620 map00630 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Pyr_redox_2 Pyr_redox_dim

Protein Analysis

510

Amino Acids

54.1

Weight (kDa)

6.55

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	48 - 372	1.7e-74	Pyridine nucleotide-disulphide oxidoreductase
FAD_oxidored	PF12831	48 - 89	6.6e-11	FAD dependent oxidoreductase
GIDA	PF01134	48 - 190	2e-10	Glucose inhibited division protein A
FAD_binding_2	PF00890	48 - 84	6.2e-07	FAD binding domain
Pyr_redox_3	PF13738	175 - 356	4.9e-07	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	219 - 295	2.7e-22	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim	PF02852	391 - 500	5.4e-42	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48030 AT1G48030 AT1G48030 AT1G48030 AT1G48030 AT3G17240 AT3G17240
fragaria_vesca	FvH4_4g20900
malus_domestica	MD13G1147400.v1.1 MD16G1145800.v1.1
prunus_persica	Prupe.1G110900_v2.0.a1 Prupe.1G110900_v2.0.a1
pyrus_communis	pycom13g12690 pycom16g12500
rosa_chinensis	RchiOBHm_Chr4g0426331
rosa_laevigata	RLG00000007302
rosa_multiflora	Rmu_sc0000730.1_g000046 Rmu_sc0007942.1_g000011
rosa_roxburghii	Rroxscaffold_5G00368340
rosa_rugosa	Rorug04G0210200
rosa_samantha	Rh4AG267200 Rh4BG273100 Rh4CG287300 Rh4DG269800
rosa_wichuraiana	Rw4G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	227, 260
AasI	GACNNNNNNGTC	2 cut(s)	143, 149
AatII	GACGTC	1 cut(s)	147
Acc36I	ACCTGC	2 cut(s)	227, 260
AccB1I	GGYRCC	2 cut(s)	248, 1375
AccB7I	CCANNNNNTGG	1 cut(s)	896
AccII	CGCG	3 cut(s)	111, 234, 1452
AclWI	GGATC	1 cut(s)	136
AcoI	YGGCCR	2 cut(s)	3, 1150
AcsI	RAATTY	2 cut(s)	821, 1014
AcuI	CTGAAG	1 cut(s)	1332
AcyI	GRCGYC	2 cut(s)	144, 1245
AfaI	GTAC	3 cut(s)	308, 828, 1056
AfiI	CCNNNNNNNGG	6 cut(s)	694, 766, 896, 948, 1276, 1385
AflIII	ACRYGT	2 cut(s)	60, 303
AgsI	TTSAA	5 cut(s)	439, 887, 920, 995, 1489
AhlI	ACTAGT	1 cut(s)	1318
AjiI	CACGTC	1 cut(s)	63
AjnI	CCWGG	2 cut(s)	1078, 1174
AjuI	GAANNNNNNNTTGG	2 cut(s)	1242, 1274
AluBI	AGCT	7 cut(s)	15, 202, 317, 896, 923, 1393, 1496
AluI	AGCT	7 cut(s)	15, 202, 317, 896, 923, 1393, 1496
Alw21I	GWGCWC	2 cut(s)	241, 1395
Alw26I	GTCTC	2 cut(s)	303, 487
AlwI	GGATC	1 cut(s)	136
AlwNI	CAGNNNCTG	2 cut(s)	566, 896
Ama87I	CYCGRG	2 cut(s)	124, 584
ApeKI	GCWGC	4 cut(s)	267, 893, 1406, 1496
ApoI	RAATTY	2 cut(s)	821, 1014
Asp700I	GAANNNNTTC	1 cut(s)	956
AspA2I	CCTAGG	1 cut(s)	1240
AspLEI	GCGC	2 cut(s)	234, 286
AspS9I	GGNCC	4 cut(s)	164, 746, 1082, 1237
AsuC2I	CCSGG	3 cut(s)	168, 585, 586
AsuHPI	GGTGA	5 cut(s)	88, 463, 914, 1079, 1184
AvaI	CYCGRG	2 cut(s)	124, 584
AvaII	GGWCC	3 cut(s)	164, 746, 1082
AvrII	CCTAGG	1 cut(s)	1240
AxyI	CCTNAGG	1 cut(s)	1197
BalI	TGGCCA	2 cut(s)	5, 1152
BanI	GGYRCC	2 cut(s)	248, 1375
BanII	GRGCYC	3 cut(s)	701, 972, 1395
BauI	CACGAG	1 cut(s)	1400
BbsI	GAAGAC	1 cut(s)	718
Bbv12I	GWGCWC	2 cut(s)	241, 1395
BbvI	GCAGC	4 cut(s)	254, 905, 1418, 1483
BccI	CCATC	8 cut(s)	101, 194, 509, 688, 769, 860, 1000, 1106
BceAI	ACGGC	2 cut(s)	59, 386
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciT130I	CCWGG	2 cut(s)	1080, 1176
BciVI	GTATCC	1 cut(s)	949
BcnI	CCSGG	3 cut(s)	168, 585, 586
BcoDI	GTCTC	2 cut(s)	303, 487
BcuI	ACTAGT	1 cut(s)	1318
BfaI	CTAG	4 cut(s)	45, 1241, 1319, 1531
BfoI	RGCGCY	1 cut(s)	287
BfuAI	ACCTGC	2 cut(s)	227, 260
BfuI	GTATCC	1 cut(s)	949
BglI	GCCNNNNNGGC	1 cut(s)	191
BglII	AGATCT	1 cut(s)	1353
BisI	GCNGC	9 cut(s)	112, 160, 183, 195, 247, 268, 894, 1407, 1497
BlnI	CCTAGG	1 cut(s)	1240
BlsI	GCNGC	9 cut(s)	113, 161, 184, 196, 248, 269, 895, 1408, 1498
Bme1390I	CCNGG	5 cut(s)	168, 585, 586, 1080, 1176
Bme18I	GGWCC	3 cut(s)	164, 746, 1082
BmeT110I	CYCGRG	2 cut(s)	124, 584
BmgBI	CACGTC	1 cut(s)	63
BmgT120I	GGNCC	4 cut(s)	164, 746, 1082, 1237
BmiI	GGNNCC	4 cut(s)	166, 250, 1173, 1377
BmrFI	CCNGG	5 cut(s)	168, 585, 586, 1080, 1176
BmsI	GCATC	4 cut(s)	231, 1297, 1417, 1439
BpiI	GAAGAC	1 cut(s)	718
BplI	GAGNNNNNCTC	2 cut(s)	683, 715
BpmI	CTGGAG	1 cut(s)	882
BpuEI	CTTGAG	3 cut(s)	194, 710, 824
BpuMI	CCSGG	3 cut(s)	168, 585, 586
Bsa29I	ATCGAT	1 cut(s)	366
BsaHI	GRCGYC	2 cut(s)	144, 1245
BsaXI	ACNNNNNCTCC	6 cut(s)	74, 104, 162, 192, 855, 885
Bsc4I	CCNNNNNNNGG	6 cut(s)	694, 766, 896, 948, 1276, 1385
Bse118I	RCCGGY	1 cut(s)	1139
Bse1I	ACTGG	1 cut(s)	628
Bse21I	CCTNAGG	1 cut(s)	1197
Bse3DI	GCAATG	3 cut(s)	552, 1415, 1443
BseBI	CCWGG	2 cut(s)	1080, 1176
BseCI	ATCGAT	1 cut(s)	366
BseGI	GGATG	3 cut(s)	822, 1117, 1465
BseLI	CCNNNNNNNGG	6 cut(s)	694, 766, 896, 948, 1276, 1385
BseMI	GCAATG	3 cut(s)	552, 1415, 1443
BseMII	CTCAG	4 cut(s)	714, 714, 1188, 1326
BseNI	ACTGG	1 cut(s)	628
BseRI	GAGGAG	1 cut(s)	1238
BseXI	GCAGC	4 cut(s)	254, 905, 1418, 1483
BseYI	CCCAGC	1 cut(s)	198
Bsh1236I	CGCG	3 cut(s)	111, 234, 1452
BshNI	GGYRCC	2 cut(s)	248, 1375
BshVI	ATCGAT	1 cut(s)	366
BsiHKAI	GWGCWC	2 cut(s)	241, 1395
BsiHKCI	CYCGRG	2 cut(s)	124, 584
BsiSI	CCGG	3 cut(s)	168, 585, 1140
BslFI	GGGAC	2 cut(s)	370, 743
BslI	CCNNNNNNNGG	6 cut(s)	694, 766, 896, 948, 1276, 1385
BsmAI	GTCTC	2 cut(s)	303, 487
BsmBI	CGTCTC	2 cut(s)	303, 487
BsmFI	GGGAC	2 cut(s)	370, 743
BsmI	GAATGC	1 cut(s)	322
BsoBI	CYCGRG	2 cut(s)	124, 584
Bsp1286I	GDGCHC	4 cut(s)	241, 701, 972, 1395
Bsp1407I	TGTACA	1 cut(s)	1054
Bsp143I	GATC	4 cut(s)	128, 363, 973, 1353
Bsp19I	CCATGG	2 cut(s)	6, 1500
BspCNI	CTCAG	4 cut(s)	713, 715, 1189, 1327
BspDI	ATCGAT	1 cut(s)	366
BspFNI	CGCG	3 cut(s)	111, 234, 1452
BspLI	GGNNCC	4 cut(s)	166, 250, 1173, 1377
BspMI	ACCTGC	2 cut(s)	227, 260
BspPI	GGATC	1 cut(s)	136
BspT107I	GGYRCC	2 cut(s)	248, 1375
BsrDI	GCAATG	3 cut(s)	552, 1415, 1443
BsrFI	RCCGGY	1 cut(s)	1139
BsrGI	TGTACA	1 cut(s)	1054
BsrI	ACTGG	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	1139
BssMI	GATC	4 cut(s)	128, 363, 973, 1353
BssNI	GRCGYC	2 cut(s)	144, 1245
BssSI	CACGAG	1 cut(s)	1400
BssT1I	CCWWGG	5 cut(s)	6, 279, 1240, 1293, 1500
Bst2BI	CACGAG	1 cut(s)	1400
Bst2UI	CCWGG	2 cut(s)	1080, 1176
Bst4CI	ACNGT	2 cut(s)	529, 733
Bst6I	CTCTTC	1 cut(s)	1101
BstACI	GRCGYC	2 cut(s)	144, 1245
BstAPI	GCANNNNNTGC	2 cut(s)	17, 1382
BstAUI	TGTACA	1 cut(s)	1054
BstC8I	GCNNGC	6 cut(s)	13, 375, 785, 946, 1092, 1450
BstDEI	CTNAG	4 cut(s)	700, 723, 1197, 1335
BstDSI	CCRYGG	3 cut(s)	6, 109, 1500
BstEII	GGTNACC	1 cut(s)	589
BstF5I	GGATG	3 cut(s)	822, 1117, 1465
BstFNI	CGCG	3 cut(s)	111, 234, 1452
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	2 cut(s)	234, 286
BstKTI	GATC	4 cut(s)	131, 366, 976, 1356
BstMAI	GTCTC	2 cut(s)	303, 487
BstMBI	GATC	4 cut(s)	128, 363, 973, 1353
BstMWI	GCNNNNNNNGC	8 cut(s)	17, 191, 252, 793, 1100, 1382, 1412, 1502
BstNI	CCWGG	2 cut(s)	1080, 1176
BstNSI	RCATGY	3 cut(s)	307, 1061, 1125
BstPI	GGTNACC	1 cut(s)	589
BstSCI	CCNGG	5 cut(s)	166, 583, 584, 1078, 1174
BstUI	CGCG	3 cut(s)	111, 234, 1452
BstV1I	GCAGC	4 cut(s)	254, 905, 1418, 1483
BstV2I	GAAGAC	1 cut(s)	718
BstX2I	RGATCY	2 cut(s)	128, 1353
BstYI	RGATCY	2 cut(s)	128, 1353
Bsu15I	ATCGAT	1 cut(s)	366
Bsu36I	CCTNAGG	1 cut(s)	1197
BsuI	GTATCC	1 cut(s)	949
BsuTUI	ATCGAT	1 cut(s)	366
BtgI	CCRYGG	3 cut(s)	6, 109, 1500
BtgZI	GCGATG	1 cut(s)	1120
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	822, 1117, 1465
BtsIMutI	CAGTG	1 cut(s)	507
BveI	ACCTGC	2 cut(s)	227, 260
Cac8I	GCNNGC	6 cut(s)	13, 375, 785, 946, 1092, 1450
CaiI	CAGNNNCTG	2 cut(s)	566, 896
CfoI	GCGC	2 cut(s)	234, 286
Cfr10I	RCCGGY	1 cut(s)	1139
Cfr13I	GGNCC	4 cut(s)	164, 746, 1082, 1237
Cfr42I	CCGCGG	1 cut(s)	112
Cfr9I	CCCGGG	1 cut(s)	584
ClaI	ATCGAT	1 cut(s)	366
CseI	GACGC	2 cut(s)	1194, 1234
Csp6I	GTAC	3 cut(s)	307, 827, 1055
CviQI	GTAC	3 cut(s)	307, 827, 1055
DdeI	CTNAG	4 cut(s)	700, 723, 1197, 1335
DpnI	GATC	4 cut(s)	130, 365, 975, 1355
DpnII	GATC	4 cut(s)	128, 363, 973, 1353
DraI	TTTAAA	1 cut(s)	331
DrdI	GACNNNNNNGTC	2 cut(s)	143, 149
DseDI	GACNNNNNNGTC	2 cut(s)	143, 149
EaeI	YGGCCR	2 cut(s)	3, 1150
Eam1104I	CTCTTC	1 cut(s)	1101
EarI	CTCTTC	1 cut(s)	1101
EciI	GGCGGA	2 cut(s)	40, 177
Ecl136II	GAGCTC	1 cut(s)	1393
Eco130I	CCWWGG	5 cut(s)	6, 279, 1240, 1293, 1500
Eco147I	AGGCCT	2 cut(s)	32, 1484
Eco24I	GRGCYC	3 cut(s)	701, 972, 1395
Eco47I	GGWCC	3 cut(s)	164, 746, 1082
Eco53kI	GAGCTC	1 cut(s)	1393
Eco57I	CTGAAG	1 cut(s)	1332
Eco81I	CCTNAGG	1 cut(s)	1197
Eco88I	CYCGRG	2 cut(s)	124, 584
Eco91I	GGTNACC	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	1393
EcoO109I	RGGNCCY	1 cut(s)	1237
EcoO65I	GGTNACC	1 cut(s)	589
EcoRII	CCWGG	2 cut(s)	1078, 1174
EcoT14I	CCWWGG	5 cut(s)	6, 279, 1240, 1293, 1500
EcoT22I	ATGCAT	1 cut(s)	1432
EcoT38I	GRGCYC	3 cut(s)	701, 972, 1395
ErhI	CCWWGG	5 cut(s)	6, 279, 1240, 1293, 1500
Esp3I	CGTCTC	2 cut(s)	303, 487
FaqI	GGGAC	2 cut(s)	370, 743
FauI	CCCGC	2 cut(s)	116, 512
Fnu4HI	GCNGC	9 cut(s)	112, 160, 183, 195, 247, 268, 894, 1407, 1497
FokI	GGATG	3 cut(s)	829, 1124, 1452
FriOI	GRGCYC	3 cut(s)	701, 972, 1395
Fsp4HI	GCNGC	9 cut(s)	112, 160, 183, 195, 247, 268, 894, 1407, 1497
FspBI	CTAG	4 cut(s)	45, 1241, 1319, 1531
GlaI	GCGC	2 cut(s)	233, 285
GluI	GCNGC	9 cut(s)	112, 160, 183, 195, 247, 268, 894, 1407, 1497
GsaI	CCCAGC	1 cut(s)	202
GsuI	CTGGAG	1 cut(s)	882
HaeII	RGCGCY	1 cut(s)	287
HapII	CCGG	3 cut(s)	168, 585, 1140
HgaI	GACGC	2 cut(s)	1194, 1234
HhaI	GCGC	2 cut(s)	234, 286
Hin1I	GRCGYC	2 cut(s)	144, 1245
Hin6I	GCGC	2 cut(s)	232, 284
HinP1I	GCGC	2 cut(s)	232, 284
HincII	GTYRAC	1 cut(s)	879
HindII	GTYRAC	1 cut(s)	879
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	4 cut(s)	423, 770, 849, 952
HpaII	CCGG	3 cut(s)	168, 585, 1140
HphI	GGTGA	5 cut(s)	88, 463, 914, 1079, 1184
Hpy166II	GTNNAC	5 cut(s)	505, 879, 1055, 1159, 1366
Hpy188I	TCNGA	8 cut(s)	70, 133, 363, 414, 568, 643, 724, 775
Hpy188III	TCNNGA	9 cut(s)	45, 126, 211, 226, 439, 861, 977, 1324, 1400
Hpy8I	GTNNAC	5 cut(s)	505, 879, 1055, 1159, 1366
Hpy99I	CGWCG	8 cut(s)	67, 70, 146, 149, 152, 182, 266, 1250
HpyAV	CCTTC	8 cut(s)	22, 47, 97, 112, 422, 1228, 1307, 1483
HpyCH4III	ACNGT	2 cut(s)	529, 733
HpyCH4IV	ACGT	4 cut(s)	62, 144, 177, 261
HpyCH4V	TGCA	9 cut(s)	222, 270, 322, 1061, 1121, 1385, 1420, 1430, 1463
HpyF10VI	GCNNNNNNNGC	8 cut(s)	17, 191, 252, 793, 1100, 1382, 1412, 1502
HpyF3I	CTNAG	4 cut(s)	700, 723, 1197, 1335
HpySE526I	ACGT	4 cut(s)	62, 144, 177, 261
Hsp92I	GRCGYC	2 cut(s)	144, 1245
HspAI	GCGC	2 cut(s)	232, 284
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	128, 363, 973, 1353
LmnI	GCTCC	2 cut(s)	671, 1225
Lsp1109I	GCAGC	4 cut(s)	254, 905, 1418, 1483
LweI	GCATC	4 cut(s)	231, 1297, 1417, 1439
MaeI	CTAG	4 cut(s)	45, 1241, 1319, 1531
MaeII	ACGT	4 cut(s)	62, 144, 177, 261
MaeIII	GTNAC	3 cut(s)	451, 589, 1036
MalI	GATC	4 cut(s)	130, 365, 975, 1355
MboI	GATC	4 cut(s)	128, 363, 973, 1353
MboII	GAAGA	5 cut(s)	281, 454, 616, 723, 1118
MfeI	CAATTG	1 cut(s)	1062
MflI	RGATCY	2 cut(s)	128, 1353
MhlI	GDGCHC	4 cut(s)	241, 701, 972, 1395
MlsI	TGGCCA	2 cut(s)	5, 1152
MluCI	AATT	4 cut(s)	788, 821, 1014, 1062
MluNI	TGGCCA	2 cut(s)	5, 1152
MlyI	GAGTC	1 cut(s)	858
MmeI	TCCRAC	6 cut(s)	48, 81, 649, 1192, 1240, 1493
Mox20I	TGGCCA	2 cut(s)	5, 1152
Mph1103I	ATGCAT	1 cut(s)	1432
MroXI	GAANNNNTTC	1 cut(s)	956
MscI	TGGCCA	2 cut(s)	5, 1152
MseI	TTAA	3 cut(s)	330, 345, 462
Msp20I	TGGCCA	2 cut(s)	5, 1152
MspA1I	CMGCKG	3 cut(s)	111, 896, 944
MspI	CCGG	3 cut(s)	168, 585, 1140
MspR9I	CCNGG	5 cut(s)	168, 585, 586, 1080, 1176
MunI	CAATTG	1 cut(s)	1062
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	2 cut(s)	1080, 1176
MvnI	CGCG	3 cut(s)	111, 234, 1452
MwoI	GCNNNNNNNGC	8 cut(s)	17, 191, 252, 793, 1100, 1382, 1412, 1502
NciI	CCSGG	3 cut(s)	168, 585, 586
NcoI	CCATGG	2 cut(s)	6, 1500
NdeII	GATC	4 cut(s)	128, 363, 973, 1353
NlaIV	GGNNCC	4 cut(s)	166, 250, 1173, 1377
NmeAIII	GCCGAG	2 cut(s)	183, 222
NmuCI	GTSAC	1 cut(s)	451
NsiI	ATGCAT	1 cut(s)	1432
NspI	RCATGY	3 cut(s)	307, 1061, 1125
PaqCI	CACCTGC	2 cut(s)	227, 260
PceI	AGGCCT	2 cut(s)	32, 1484
PciI	ACATGT	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 147
PctI	GAATGC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	956
PfeI	GAWTC	3 cut(s)	423, 770, 952
PflFI	GACNNNGTC	1 cut(s)	146
PflMI	CCANNNNNTGG	1 cut(s)	896
PfoI	TCCNGGA	1 cut(s)	1078
PkrI	GCNGC	9 cut(s)	113, 161, 184, 196, 248, 269, 895, 1408, 1498
PleI	GAGTC	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	857
PscI	ACATGT	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	1395
Psp6I	CCWGG	2 cut(s)	1078, 1174
PspEI	GGTNACC	1 cut(s)	589
PspFI	CCCAGC	1 cut(s)	198
PspGI	CCWGG	2 cut(s)	1078, 1174
PspN4I	GGNNCC	4 cut(s)	166, 250, 1173, 1377
PspPI	GGNCC	4 cut(s)	164, 746, 1082, 1237
PsrI	GAACNNNNNNTAC	2 cut(s)	1029, 1061
PstNI	CAGNNNCTG	2 cut(s)	566, 896
PsuI	RGATCY	2 cut(s)	128, 1353
PsyI	GACNNNGTC	1 cut(s)	146
PvuII	CAGCTG	1 cut(s)	896
RsaI	GTAC	3 cut(s)	308, 828, 1056
RsaNI	GTAC	3 cut(s)	307, 827, 1055
SacI	GAGCTC	1 cut(s)	1395
SacII	CCGCGG	1 cut(s)	112
SaqAI	TTAA	3 cut(s)	330, 345, 462
SatI	GCNGC	9 cut(s)	112, 160, 183, 195, 247, 268, 894, 1407, 1497
Sau3AI	GATC	4 cut(s)	128, 363, 973, 1353
Sau96I	GGNCC	4 cut(s)	164, 746, 1082, 1237
SchI	GAGTC	1 cut(s)	858
ScrFI	CCNGG	5 cut(s)	168, 585, 586, 1080, 1176
SduI	GDGCHC	4 cut(s)	241, 701, 972, 1395
SfaNI	GCATC	4 cut(s)	231, 1297, 1417, 1439
Sfr303I	CCGCGG	1 cut(s)	112
SgrBI	CCGCGG	1 cut(s)	112
SinI	GGWCC	3 cut(s)	164, 746, 1082
SmaI	CCCGGG	1 cut(s)	586
SmlI	CTYRAG	3 cut(s)	209, 689, 803
SmoI	CTYRAG	3 cut(s)	209, 689, 803
SpeI	ACTAGT	1 cut(s)	1318
Sse9I	AATT	4 cut(s)	788, 821, 1014, 1062
SseBI	AGGCCT	2 cut(s)	32, 1484
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	4 cut(s)	45, 1241, 1319, 1531
SstI	GAGCTC	1 cut(s)	1395
StuI	AGGCCT	2 cut(s)	32, 1484
StyD4I	CCNGG	5 cut(s)	166, 583, 584, 1078, 1174
StyI	CCWWGG	5 cut(s)	6, 279, 1240, 1293, 1500
TaaI	ACNGT	2 cut(s)	529, 733
TaiI	ACGT	4 cut(s)	65, 147, 180, 264
TaqI	TCGA	7 cut(s)	225, 351, 366, 426, 852, 972, 1248
TaqII	GACCGA	1 cut(s)	1235
TasI	AATT	4 cut(s)	788, 821, 1014, 1062
TatI	WGTACW	2 cut(s)	826, 1054
TauI	GCSGC	5 cut(s)	114, 162, 185, 197, 249
TfiI	GAWTC	3 cut(s)	423, 770, 952
Tru1I	TTAA	3 cut(s)	330, 345, 462
Tru9I	TTAA	3 cut(s)	330, 345, 462
TscAI	CASTG	1 cut(s)	507
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	4 cut(s)	267, 893, 1406, 1496
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	7 cut(s)	281, 315, 327, 507, 833, 1041, 1123
TspMI	CCCGGG	1 cut(s)	584
TspRI	CASTG	1 cut(s)	507
Tth111I	GACNNNGTC	1 cut(s)	146
Van91I	CCANNNNNTGG	1 cut(s)	896
VpaK11BI	GGWCC	3 cut(s)	164, 746, 1082
XapI	RAATTY	2 cut(s)	821, 1014
XbaI	TCTAGA	1 cut(s)	44
XceI	RCATGY	3 cut(s)	307, 1061, 1125
XmaI	CCCGGG	1 cut(s)	584
XmaJI	CCTAGG	1 cut(s)	1240
XmnI	GAANNNNTTC	1 cut(s)	956
XspI	CTAG	4 cut(s)	45, 1241, 1319, 1531
ZraI	GACGTC	1 cut(s)	145
Zsp2I	ATGCAT	1 cut(s)	1432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.