Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007176

Physical Location & Seq

Genomic Coordinates Reverse (-)

50150433 .. 50152540

Gene Structure 2108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00368340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGGCCATGGCAAGCTTTGCTCGGCGGAAGGCCTACCTTCTCTCTAGAAACTTGTCCAACACGTCGTCGGAGGCCGTCCGCTACTCCTTCTCGATCACCTCCTTCTCCCGCGGCTTTGCTTCCGCGGGATCTGACGACAACGACGTCGTCGTCATCGGCGGCGGACCCGGCGGCTACGTCGCCGCCATCAAGGCCGCCCAGCTCGGCCTCAAGACCACCTGCATCGAGAAGCGCGGTGCTCTCGGCGGCACCTGCCTCAACGTCGGCTGCATACCCTCAAAGGCGCTTCTTCATTCGTCTCACATGTACCATGAAGCTCTGCATTCATTTAAAAGTCATGGTGTTAAGTTCGACAATGTTCAGATTGATTTGCCTGCCATGATGTCCCAGAAAGACAAAGCCGTGTCTAATCTGACTAAAGGAATCGAAGGTCTGTTCAAGAAGAATAAGGTGACTTATGTTAAAGGCTATGGAAAGTTCATCTCCCCCAATGAAGTTTCAGTGGACACCATTGATGGTTCTGATGTCAAATCTTTGCCCGGGGTTACCATTGATGAGAAGAAAATAGTATCATCAACTGGTGCTCTGGCTCTGTCAGAAATCCCAAAGAAACTTGTGGTTGTTGGAGCAGGATATATTGGCCTTGAGATGGGCTCAGTCTGGGGAAGACTTGGTTCTGAGATAACCGTTGTTGAGTTTGGACCTGATATTGTCCCATCAATGGATTCGGAAATCCGCAAGCAATTCCAGCGTTCCCTTGAGAAGCAAGGGATGAAATTTGTACTCAAAACAAAAGTGGTAGGAGTTGATACTTCTGGACATGGTGTGAAGTTGACCCTTGAACCAGCAGCTGGTGGTGAGCAGACCACACTTGAAGCTGATGTTGTTCTTGTATCTGCTGGCAGGAATCCATTCACATCTGGGCTCGATCTGGACAAGATAGGAGTTGAAACTGACAAGATGGGGAGAATTTTAGTGAATGAAAGGTTTGTAACAAATGTTCCAAGTGTTCATGCAATTGGTGATGTTATTCCTGGACCTATGCTCGCTCACAAGGCAGAAGAGGATGGGGTTGCATGTGTGGAGTTCATAGCTGGTAAGGTTGGCCATGTGGACTATGACAAGGTCCCTGGGGTTGTCTATACTCACCCTGAGGTTGCGTCTGTTGGAAAGACTGAGGAGCAAGTGAAGGCCCTAGGCGTCGAGTACCGAGTTGGAAAGTTCCCATTCTTGGCAAACAGCAGAGCCAAGGCAATAGATGATGCTGAAGGACTAGTCAAGATTTTGGCTGAGAAAGAAACAGATAAGATCTTGGGAGTTCACATCATGGCACCCAATGCGGGAGAGCTCATTCACGAGGCAGCCATAGCATTGCAGTATGATGCATCAAGTGAGGACATAGCTCGCGTTTGCCATGCACATCCAACCATGAGCGAGGCCTTGAAGGAAGCTGCCATGGCGACTTATGACAAGGCCATTCACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004148 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005759 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009507 GO:0009536 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0017076 GO:0019866 GO:0030554 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0050897 GO:0055114 GO:0070013 GO:0070469 GO:0097159 GO:0097367 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901265 GO:1901363 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00260 ko00280 ko00620 ko00630 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00260 map00280 map00620 map00630 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Pyr_redox_2 Pyr_redox_dim

Protein Analysis

495

Amino Acids

52.65

Weight (kDa)

6.45

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	48 - 357	2.3e-66	Pyridine nucleotide-disulphide oxidoreductase
FAD_oxidored	PF12831	48 - 88	7.7e-11	FAD dependent oxidoreductase
GIDA	PF01134	48 - 195	6.8e-09	Glucose inhibited division protein A
FAD_binding_2	PF00890	48 - 84	6e-07	FAD binding domain
Pyr_redox	PF00070	204 - 280	1.5e-21	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim	PF02852	376 - 485	5.1e-42	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48030 AT1G48030 AT1G48030 AT1G48030 AT1G48030 AT3G17240 AT3G17240
fragaria_vesca	FvH4_4g20900
malus_domestica	MD13G1147400.v1.1 MD16G1145800.v1.1
prunus_persica	Prupe.1G110900_v2.0.a1 Prupe.1G110900_v2.0.a1
pyrus_communis	pycom13g12690 pycom16g12500
rosa_chinensis	RchiOBHm_Chr4g0426331
rosa_laevigata	RLG00000007302
rosa_multiflora	Rmu_sc0000730.1_g000046 Rmu_sc0007942.1_g000011
rosa_roxburghii	Rroxscaffold_5G00368340
rosa_rugosa	Rorug04G0210200
rosa_samantha	Rh4AG267200 Rh4BG273100 Rh4CG287300 Rh4DG269800
rosa_wichuraiana	Rw4G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	227, 260
AasI	GACNNNNNNGTC	2 cut(s)	143, 149
AatII	GACGTC	1 cut(s)	147
Acc36I	ACCTGC	2 cut(s)	227, 260
AccB1I	GGYRCC	2 cut(s)	248, 1330
AccB7I	CCANNNNNTGG	1 cut(s)	851
AccII	CGCG	4 cut(s)	111, 125, 234, 1407
AclWI	GGATC	1 cut(s)	136
AcoI	YGGCCR	2 cut(s)	3, 1105
AcsI	RAATTY	2 cut(s)	776, 969
AcuI	CTGAAG	1 cut(s)	1287
AcyI	GRCGYC	2 cut(s)	144, 1200
AfaI	GTAC	3 cut(s)	308, 783, 1208
AfiI	CCNNNNNNNGG	5 cut(s)	649, 721, 851, 1231, 1340
AflIII	ACRYGT	2 cut(s)	60, 303
AgsI	TTSAA	5 cut(s)	439, 842, 875, 950, 1444
AhlI	ACTAGT	1 cut(s)	1273
AjiI	CACGTC	1 cut(s)	63
AjnI	CCWGG	2 cut(s)	1033, 1129
AluBI	AGCT	9 cut(s)	15, 202, 317, 851, 878, 1094, 1348, 1403, 1451
AluI	AGCT	9 cut(s)	15, 202, 317, 851, 878, 1094, 1348, 1403, 1451
Alw21I	GWGCWC	3 cut(s)	241, 586, 1350
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	136
AlwNI	CAGNNNCTG	1 cut(s)	851
Ama87I	CYCGRG	1 cut(s)	539
ApeKI	GCWGC	4 cut(s)	267, 848, 1361, 1451
ApoI	RAATTY	2 cut(s)	776, 969
Asp700I	GAANNNNTTC	1 cut(s)	911
AspA2I	CCTAGG	1 cut(s)	1195
AspLEI	GCGC	2 cut(s)	234, 286
AspS9I	GGNCC	5 cut(s)	164, 701, 1037, 1126, 1192
AsuC2I	CCSGG	3 cut(s)	168, 540, 541
AsuHPI	GGTGA	5 cut(s)	88, 463, 869, 1034, 1139
AvaI	CYCGRG	1 cut(s)	539
AvaII	GGWCC	4 cut(s)	164, 701, 1037, 1126
AvrII	CCTAGG	1 cut(s)	1195
AxyI	CCTNAGG	1 cut(s)	1152
BalI	TGGCCA	2 cut(s)	5, 1107
BanI	GGYRCC	2 cut(s)	248, 1330
BanII	GRGCYC	3 cut(s)	656, 927, 1350
BauI	CACGAG	1 cut(s)	1355
BbsI	GAAGAC	1 cut(s)	673
Bbv12I	GWGCWC	3 cut(s)	241, 586, 1350
BbvI	GCAGC	4 cut(s)	254, 860, 1373, 1438
BccI	CCATC	6 cut(s)	194, 509, 643, 724, 955, 1061
BceAI	ACGGC	2 cut(s)	59, 386
BciT130I	CCWGG	2 cut(s)	1035, 1131
BcnI	CCSGG	3 cut(s)	168, 540, 541
BcoDI	GTCTC	1 cut(s)	303
BcuI	ACTAGT	1 cut(s)	1273
BfaI	CTAG	4 cut(s)	45, 1196, 1274, 1486
BfoI	RGCGCY	1 cut(s)	287
BfuAI	ACCTGC	2 cut(s)	227, 260
BglI	GCCNNNNNGGC	1 cut(s)	191
BglII	AGATCT	1 cut(s)	1308
BlnI	CCTAGG	1 cut(s)	1195
Bme1390I	CCNGG	5 cut(s)	168, 540, 541, 1035, 1131
Bme18I	GGWCC	4 cut(s)	164, 701, 1037, 1126
BmeT110I	CYCGRG	1 cut(s)	539
BmgBI	CACGTC	1 cut(s)	63
BmgT120I	GGNCC	5 cut(s)	164, 701, 1037, 1126, 1192
BmiI	GGNNCC	4 cut(s)	166, 250, 1128, 1332
BmrFI	CCNGG	5 cut(s)	168, 540, 541, 1035, 1131
BmsI	GCATC	4 cut(s)	231, 1252, 1372, 1394
BpiI	GAAGAC	1 cut(s)	673
BplI	GAGNNNNNCTC	2 cut(s)	638, 670
BpuEI	CTTGAG	3 cut(s)	194, 665, 779
BpuMI	CCSGG	3 cut(s)	168, 540, 541
BsaHI	GRCGYC	2 cut(s)	144, 1200
Bsc4I	CCNNNNNNNGG	5 cut(s)	649, 721, 851, 1231, 1340
Bse1I	ACTGG	1 cut(s)	583
Bse21I	CCTNAGG	1 cut(s)	1152
Bse3DI	GCAATG	1 cut(s)	1370
BseBI	CCWGG	2 cut(s)	1035, 1131
BseGI	GGATG	3 cut(s)	777, 1072, 1420
BseLI	CCNNNNNNNGG	5 cut(s)	649, 721, 851, 1231, 1340
BseMI	GCAATG	1 cut(s)	1370
BseMII	CTCAG	5 cut(s)	669, 669, 1143, 1167, 1281
BseNI	ACTGG	1 cut(s)	583
BseRI	GAGGAG	1 cut(s)	1193
BseXI	GCAGC	4 cut(s)	254, 860, 1373, 1438
BseYI	CCCAGC	1 cut(s)	198
Bsh1236I	CGCG	4 cut(s)	111, 125, 234, 1407
BshNI	GGYRCC	2 cut(s)	248, 1330
BsiHKAI	GWGCWC	3 cut(s)	241, 586, 1350
BsiHKCI	CYCGRG	1 cut(s)	539
BsiSI	CCGG	2 cut(s)	168, 540
BslFI	GGGAC	3 cut(s)	370, 698, 1112
BslI	CCNNNNNNNGG	5 cut(s)	649, 721, 851, 1231, 1340
BsmAI	GTCTC	1 cut(s)	303
BsmBI	CGTCTC	1 cut(s)	303
BsmFI	GGGAC	3 cut(s)	370, 698, 1112
BsmI	GAATGC	1 cut(s)	322
BsoBI	CYCGRG	1 cut(s)	539
Bsp1286I	GDGCHC	5 cut(s)	241, 586, 656, 927, 1350
Bsp143I	GATC	4 cut(s)	93, 128, 928, 1308
Bsp19I	CCATGG	2 cut(s)	6, 1455
BspCNI	CTCAG	5 cut(s)	668, 670, 1144, 1168, 1282
BspFNI	CGCG	4 cut(s)	111, 125, 234, 1407
BspLI	GGNNCC	4 cut(s)	166, 250, 1128, 1332
BspMI	ACCTGC	2 cut(s)	227, 260
BspPI	GGATC	1 cut(s)	136
BspT107I	GGYRCC	2 cut(s)	248, 1330
BsrDI	GCAATG	1 cut(s)	1370
BsrI	ACTGG	1 cut(s)	583
BssMI	GATC	4 cut(s)	93, 128, 928, 1308
BssNI	GRCGYC	2 cut(s)	144, 1200
BssSI	CACGAG	1 cut(s)	1355
BssT1I	CCWWGG	4 cut(s)	6, 1195, 1248, 1455
Bst2BI	CACGAG	1 cut(s)	1355
Bst2UI	CCWGG	2 cut(s)	1035, 1131
Bst4CI	ACNGT	1 cut(s)	688
Bst6I	CTCTTC	1 cut(s)	1056
BstACI	GRCGYC	2 cut(s)	144, 1200
BstAPI	GCANNNNNTGC	2 cut(s)	17, 1337
BstC8I	GCNNGC	6 cut(s)	13, 375, 740, 901, 1047, 1405
BstDEI	CTNAG	5 cut(s)	655, 678, 1152, 1176, 1290
BstDSI	CCRYGG	4 cut(s)	6, 109, 123, 1455
BstEII	GGTNACC	1 cut(s)	544
BstF5I	GGATG	3 cut(s)	777, 1072, 1420
BstFNI	CGCG	4 cut(s)	111, 125, 234, 1407
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	2 cut(s)	234, 286
BstKTI	GATC	4 cut(s)	96, 131, 931, 1311
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	4 cut(s)	93, 128, 928, 1308
BstMWI	GCNNNNNNNGC	9 cut(s)	17, 168, 191, 252, 748, 1055, 1337, 1367, 1457
BstNI	CCWGG	2 cut(s)	1035, 1131
BstNSI	RCATGY	2 cut(s)	307, 1080
BstPI	GGTNACC	1 cut(s)	544
BstSCI	CCNGG	5 cut(s)	166, 538, 539, 1033, 1129
BstUI	CGCG	4 cut(s)	111, 125, 234, 1407
BstV1I	GCAGC	4 cut(s)	254, 860, 1373, 1438
BstV2I	GAAGAC	1 cut(s)	673
BstX2I	RGATCY	2 cut(s)	128, 1308
BstYI	RGATCY	2 cut(s)	128, 1308
Bsu36I	CCTNAGG	1 cut(s)	1152
BtgI	CCRYGG	4 cut(s)	6, 109, 123, 1455
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	777, 1072, 1420
BtsIMutI	CAGTG	1 cut(s)	507
BveI	ACCTGC	2 cut(s)	227, 260
Cac8I	GCNNGC	6 cut(s)	13, 375, 740, 901, 1047, 1405
CaiI	CAGNNNCTG	1 cut(s)	851
CfoI	GCGC	2 cut(s)	234, 286
Cfr13I	GGNCC	5 cut(s)	164, 701, 1037, 1126, 1192
Cfr42I	CCGCGG	2 cut(s)	112, 126
Cfr9I	CCCGGG	1 cut(s)	539
CseI	GACGC	2 cut(s)	1149, 1189
Csp6I	GTAC	3 cut(s)	307, 782, 1207
CviQI	GTAC	3 cut(s)	307, 782, 1207
DdeI	CTNAG	5 cut(s)	655, 678, 1152, 1176, 1290
DpnI	GATC	4 cut(s)	95, 130, 930, 1310
DpnII	GATC	4 cut(s)	93, 128, 928, 1308
DraI	TTTAAA	1 cut(s)	331
DrdI	GACNNNNNNGTC	2 cut(s)	143, 149
DseDI	GACNNNNNNGTC	2 cut(s)	143, 149
EaeI	YGGCCR	2 cut(s)	3, 1105
Eam1104I	CTCTTC	1 cut(s)	1056
EarI	CTCTTC	1 cut(s)	1056
EciI	GGCGGA	2 cut(s)	40, 177
Ecl136II	GAGCTC	1 cut(s)	1348
Eco130I	CCWWGG	4 cut(s)	6, 1195, 1248, 1455
Eco147I	AGGCCT	2 cut(s)	32, 1439
Eco24I	GRGCYC	3 cut(s)	656, 927, 1350
Eco47I	GGWCC	4 cut(s)	164, 701, 1037, 1126
Eco53kI	GAGCTC	1 cut(s)	1348
Eco57I	CTGAAG	1 cut(s)	1287
Eco81I	CCTNAGG	1 cut(s)	1152
Eco88I	CYCGRG	1 cut(s)	539
Eco91I	GGTNACC	1 cut(s)	544
EcoICRI	GAGCTC	1 cut(s)	1348
EcoO109I	RGGNCCY	2 cut(s)	1126, 1192
EcoO65I	GGTNACC	1 cut(s)	544
EcoRII	CCWGG	2 cut(s)	1033, 1129
EcoT14I	CCWWGG	4 cut(s)	6, 1195, 1248, 1455
EcoT22I	ATGCAT	1 cut(s)	1387
EcoT38I	GRGCYC	3 cut(s)	656, 927, 1350
ErhI	CCWWGG	4 cut(s)	6, 1195, 1248, 1455
Esp3I	CGTCTC	1 cut(s)	303
FaqI	GGGAC	3 cut(s)	370, 698, 1112
FauI	CCCGC	3 cut(s)	116, 118, 1333
FokI	GGATG	3 cut(s)	784, 1079, 1407
FriOI	GRGCYC	3 cut(s)	656, 927, 1350
FspBI	CTAG	4 cut(s)	45, 1196, 1274, 1486
GlaI	GCGC	2 cut(s)	233, 285
GsaI	CCCAGC	1 cut(s)	202
HaeII	RGCGCY	1 cut(s)	287
HapII	CCGG	2 cut(s)	168, 540
HgaI	GACGC	2 cut(s)	1149, 1189
HhaI	GCGC	2 cut(s)	234, 286
Hin1I	GRCGYC	2 cut(s)	144, 1200
Hin6I	GCGC	2 cut(s)	232, 284
HinP1I	GCGC	2 cut(s)	232, 284
HincII	GTYRAC	1 cut(s)	834
HindII	GTYRAC	1 cut(s)	834
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	3 cut(s)	423, 725, 907
HpaII	CCGG	2 cut(s)	168, 540
HphI	GGTGA	5 cut(s)	88, 463, 869, 1034, 1139
Hpy166II	GTNNAC	4 cut(s)	505, 834, 1114, 1321
Hpy188I	TCNGA	8 cut(s)	70, 133, 363, 414, 523, 598, 679, 730
Hpy188III	TCNNGA	9 cut(s)	45, 91, 211, 226, 439, 816, 932, 1279, 1355
Hpy8I	GTNNAC	4 cut(s)	505, 834, 1114, 1321
Hpy99I	CGWCG	8 cut(s)	67, 70, 146, 149, 152, 182, 266, 1205
HpyAV	CCTTC	8 cut(s)	22, 47, 97, 112, 422, 1183, 1262, 1438
HpyCH4III	ACNGT	1 cut(s)	688
HpyCH4IV	ACGT	4 cut(s)	62, 144, 177, 261
HpyCH4V	TGCA	8 cut(s)	222, 270, 322, 1016, 1076, 1375, 1385, 1418
HpyF10VI	GCNNNNNNNGC	9 cut(s)	17, 168, 191, 252, 748, 1055, 1337, 1367, 1457
HpyF3I	CTNAG	5 cut(s)	655, 678, 1152, 1176, 1290
HpySE526I	ACGT	4 cut(s)	62, 144, 177, 261
Hsp92I	GRCGYC	2 cut(s)	144, 1200
HspAI	GCGC	2 cut(s)	232, 284
KspI	CCGCGG	2 cut(s)	112, 126
Kzo9I	GATC	4 cut(s)	93, 128, 928, 1308
LmnI	GCTCC	2 cut(s)	626, 1180
Lsp1109I	GCAGC	4 cut(s)	254, 860, 1373, 1438
LweI	GCATC	4 cut(s)	231, 1252, 1372, 1394
MaeI	CTAG	4 cut(s)	45, 1196, 1274, 1486
MaeII	ACGT	4 cut(s)	62, 144, 177, 261
MaeIII	GTNAC	3 cut(s)	451, 544, 991
MalI	GATC	4 cut(s)	95, 130, 930, 1310
MboI	GATC	4 cut(s)	93, 128, 928, 1308
MboII	GAAGA	5 cut(s)	281, 454, 571, 678, 1073
MfeI	CAATTG	1 cut(s)	1017
MflI	RGATCY	2 cut(s)	128, 1308
MhlI	GDGCHC	5 cut(s)	241, 586, 656, 927, 1350
MlsI	TGGCCA	2 cut(s)	5, 1107
MluCI	AATT	4 cut(s)	743, 776, 969, 1017
MluNI	TGGCCA	2 cut(s)	5, 1107
MmeI	TCCRAC	6 cut(s)	48, 81, 604, 1147, 1195, 1448
Mox20I	TGGCCA	2 cut(s)	5, 1107
Mph1103I	ATGCAT	1 cut(s)	1387
MroXI	GAANNNNTTC	1 cut(s)	911
MscI	TGGCCA	2 cut(s)	5, 1107
MseI	TTAA	3 cut(s)	330, 345, 462
Msp20I	TGGCCA	2 cut(s)	5, 1107
MspA1I	CMGCKG	3 cut(s)	111, 125, 851
MspI	CCGG	2 cut(s)	168, 540
MspR9I	CCNGG	5 cut(s)	168, 540, 541, 1035, 1131
MunI	CAATTG	1 cut(s)	1017
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	2 cut(s)	1035, 1131
MvnI	CGCG	4 cut(s)	111, 125, 234, 1407
MwoI	GCNNNNNNNGC	9 cut(s)	17, 168, 191, 252, 748, 1055, 1337, 1367, 1457
NciI	CCSGG	3 cut(s)	168, 540, 541
NcoI	CCATGG	2 cut(s)	6, 1455
NdeII	GATC	4 cut(s)	93, 128, 928, 1308
NlaIV	GGNNCC	4 cut(s)	166, 250, 1128, 1332
NmeAIII	GCCGAG	2 cut(s)	183, 222
NmuCI	GTSAC	1 cut(s)	451
NsiI	ATGCAT	1 cut(s)	1387
NspI	RCATGY	2 cut(s)	307, 1080
PaqCI	CACCTGC	2 cut(s)	227, 260
PasI	CCCWGGG	1 cut(s)	1130
PceI	AGGCCT	2 cut(s)	32, 1439
PciI	ACATGT	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 147
PctI	GAATGC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	911
PfeI	GAWTC	3 cut(s)	423, 725, 907
PflFI	GACNNNGTC	2 cut(s)	146, 1124
PflMI	CCANNNNNTGG	1 cut(s)	851
PfoI	TCCNGGA	1 cut(s)	1033
PpuMI	RGGWCCY	1 cut(s)	1126
PscI	ACATGT	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	1350
Psp5II	RGGWCCY	1 cut(s)	1126
Psp6I	CCWGG	2 cut(s)	1033, 1129
PspEI	GGTNACC	1 cut(s)	544
PspFI	CCCAGC	1 cut(s)	198
PspGI	CCWGG	2 cut(s)	1033, 1129
PspN4I	GGNNCC	4 cut(s)	166, 250, 1128, 1332
PspPI	GGNCC	5 cut(s)	164, 701, 1037, 1126, 1192
PspPPI	RGGWCCY	1 cut(s)	1126
PsrI	GAACNNNNNNTAC	2 cut(s)	984, 1016
PstNI	CAGNNNCTG	1 cut(s)	851
PsuI	RGATCY	2 cut(s)	128, 1308
PsyI	GACNNNGTC	2 cut(s)	146, 1124
PvuII	CAGCTG	1 cut(s)	851
RsaI	GTAC	3 cut(s)	308, 783, 1208
RsaNI	GTAC	3 cut(s)	307, 782, 1207
SacI	GAGCTC	1 cut(s)	1350
SacII	CCGCGG	2 cut(s)	112, 126
SaqAI	TTAA	3 cut(s)	330, 345, 462
Sau3AI	GATC	4 cut(s)	93, 128, 928, 1308
Sau96I	GGNCC	5 cut(s)	164, 701, 1037, 1126, 1192
ScrFI	CCNGG	5 cut(s)	168, 540, 541, 1035, 1131
SduI	GDGCHC	5 cut(s)	241, 586, 656, 927, 1350
SfaNI	GCATC	4 cut(s)	231, 1252, 1372, 1394
Sfr303I	CCGCGG	2 cut(s)	112, 126
SgrBI	CCGCGG	2 cut(s)	112, 126
SinI	GGWCC	4 cut(s)	164, 701, 1037, 1126
SmaI	CCCGGG	1 cut(s)	541
SmlI	CTYRAG	3 cut(s)	209, 644, 758
SmoI	CTYRAG	3 cut(s)	209, 644, 758
SpeI	ACTAGT	1 cut(s)	1273
Sse9I	AATT	4 cut(s)	743, 776, 969, 1017
SseBI	AGGCCT	2 cut(s)	32, 1439
SspMI	CTAG	4 cut(s)	45, 1196, 1274, 1486
SstI	GAGCTC	1 cut(s)	1350
StuI	AGGCCT	2 cut(s)	32, 1439
StyD4I	CCNGG	5 cut(s)	166, 538, 539, 1033, 1129
StyI	CCWWGG	4 cut(s)	6, 1195, 1248, 1455
TaaI	ACNGT	1 cut(s)	688
TaiI	ACGT	4 cut(s)	65, 147, 180, 264
TaqI	TCGA	6 cut(s)	92, 225, 351, 426, 927, 1203
TasI	AATT	4 cut(s)	743, 776, 969, 1017
TatI	WGTACW	1 cut(s)	781
TauI	GCSGC	6 cut(s)	114, 162, 174, 185, 197, 249
TfiI	GAWTC	3 cut(s)	423, 725, 907
Tru1I	TTAA	3 cut(s)	330, 345, 462
Tru9I	TTAA	3 cut(s)	330, 345, 462
TscAI	CASTG	1 cut(s)	507
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	4 cut(s)	267, 848, 1361, 1451
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	9 cut(s)	281, 315, 327, 469, 507, 788, 996, 1001, 1078
TspMI	CCCGGG	1 cut(s)	539
TspRI	CASTG	1 cut(s)	507
Tth111I	GACNNNGTC	2 cut(s)	146, 1124
Van91I	CCANNNNNTGG	1 cut(s)	851
VpaK11BI	GGWCC	4 cut(s)	164, 701, 1037, 1126
XapI	RAATTY	2 cut(s)	776, 969
XbaI	TCTAGA	1 cut(s)	44
XceI	RCATGY	2 cut(s)	307, 1080
XmaI	CCCGGG	1 cut(s)	539
XmaJI	CCTAGG	1 cut(s)	1195
XmnI	GAANNNNTTC	1 cut(s)	911
XspI	CTAG	4 cut(s)	45, 1196, 1274, 1486
ZraI	GACGTC	1 cut(s)	145
Zsp2I	ATGCAT	1 cut(s)	1387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.