MD13G1185300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0016523
Physical Location & Seq
Forward (+)
15769163 .. 15772211
3049 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1185300.v1.1.491

Sequence Viewer

Length: 225 bp
ATGAAAGTGAATTCGAATGCGATGAGATCGGGAGTTGTGGTGCTCGGAGCGCTGGCGTTTGGGTACTTGACGCTGCAGCTTGGCTTCCGGCCCTTTCTCGAAAGAGCTCAATCTGCCGTTGACGACTTTGATCCGGCGTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGAACAACAAGAACAACAACAACCCGACTCCAGCAGCTCCACCCGCCGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

7.9

Weight (kDa)

5.04

Isoelectric Point (pI)

81.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63160 AT5G19151
fragaria_vesca FvH4_4g14770
malus_domestica MD13G1185300.v1.1
prunus_persica Prupe.1G152900_v2.0.a1
rosa_chinensis RchiOBHm_Chr0c32g0501461 RchiOBHm_Chr0c32g0501651
rosa_laevigata RLG00000007896 RLG00000023258
rosa_multiflora Rmu_sc0021105.1_g000001 Rmu_sc0028140.1_g000001
rosa_roxburghii Rroxscaffold_6G00398110
rosa_samantha Rh4DG209700
rosa_wichuraiana Rw4G017960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 162, 165, 168, 214, 217
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 1 cut(s) 10
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 1 cut(s) 65
AfeI AGCGCT 1 cut(s) 51
AluBI AGCT 3 cut(s) 79, 107, 207
AluI AGCT 3 cut(s) 79, 107, 207
Alw21I GWGCWC 2 cut(s) 45, 109
AlwI GGATC 1 cut(s) 125
Aor51HI AGCGCT 1 cut(s) 51
AoxI GGCC 1 cut(s) 89
ApeKI GCWGC 3 cut(s) 73, 76, 204
ApoI RAATTY 1 cut(s) 10
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 90
AsuII TTCGAA 1 cut(s) 14
BanII GRGCYC 1 cut(s) 109
Bbv12I GWGCWC 2 cut(s) 45, 109
BbvI GCAGC 3 cut(s) 60, 88, 216
BceAI ACGGC 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 53
BisI GCNGC 6 cut(s) 74, 77, 165, 168, 205, 217
BlsI GCNGC 6 cut(s) 75, 78, 166, 169, 206, 218
BmgT120I GGNCC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 184
Bpu14I TTCGAA 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
BseRI GAGGAG 6 cut(s) 133, 136, 139, 142, 145, 148
BseXI GCAGC 3 cut(s) 60, 88, 216
BshFI GGCC 1 cut(s) 91
BsiHKAI GWGCWC 2 cut(s) 45, 109
BsiSI CCGG 2 cut(s) 88, 134
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 45, 109
Bsp143I GATC 2 cut(s) 26, 130
BspACI CCGC 5 cut(s) 162, 165, 168, 214, 217
BspANI GGCC 1 cut(s) 91
BspMAI CTGCAG 1 cut(s) 78
BspPI GGATC 1 cut(s) 125
BspT104I TTCGAA 1 cut(s) 14
BssMI GATC 2 cut(s) 26, 130
BssNI GRCGYC 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 137
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 54
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 2 cut(s) 29, 133
BstMBI GATC 2 cut(s) 26, 130
BstMWI GCNNNNNNNGC 3 cut(s) 49, 113, 213
BstSFI CTRYAG 1 cut(s) 74
BstV1I GCAGC 3 cut(s) 60, 88, 216
BsuRI GGCC 1 cut(s) 91
BtgZI GCGATG 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 54
CfoI GCGC 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 90
CseI GACGC 2 cut(s) 79, 126
Csp6I GTAC 1 cut(s) 64
CviJI RGCY 5 cut(s) 79, 84, 91, 107, 207
CviKI_1 RGCY 5 cut(s) 79, 84, 91, 107, 207
CviQI GTAC 1 cut(s) 64
DpnI GATC 2 cut(s) 28, 132
DpnII GATC 2 cut(s) 26, 130
EciI GGCGGA 1 cut(s) 151
Ecl136II GAGCTC 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 109
Eco47III AGCGCT 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 109
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 6 cut(s) 74, 77, 165, 168, 205, 217
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 6 cut(s) 74, 77, 165, 168, 205, 217
GlaI GCGC 1 cut(s) 51
GluI GCNGC 6 cut(s) 74, 77, 165, 168, 205, 217
GsuI CTGGAG 1 cut(s) 184
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 1 cut(s) 91
HapII CCGG 2 cut(s) 88, 134
HgaI GACGC 2 cut(s) 79, 126
HhaI GCGC 1 cut(s) 52
Hin1I GRCGYC 1 cut(s) 137
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 197
HpaII CCGG 2 cut(s) 88, 134
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 2 cut(s) 30, 98
Hpy8I GTNNAC 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 113, 213
Hsp92I GRCGYC 1 cut(s) 137
HspAI GCGC 1 cut(s) 50
Kzo9I GATC 2 cut(s) 26, 130
LmnI GCTCC 2 cut(s) 47, 212
LpnPI CCDG 4 cut(s) 38, 101, 147, 214
Lsp1109I GCAGC 3 cut(s) 60, 88, 216
MalI GATC 2 cut(s) 28, 132
MboI GATC 2 cut(s) 26, 130
MhlI GDGCHC 2 cut(s) 45, 109
MluCI AATT 1 cut(s) 10
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 7 cut(s) 151, 154, 157, 160, 163, 166, 169
MspI CCGG 2 cut(s) 88, 134
Mva1269I GAATGC 1 cut(s) 22
MwoI GCNNNNNNNGC 3 cut(s) 49, 113, 213
NdeII GATC 2 cut(s) 26, 130
NspV TTCGAA 1 cut(s) 14
PctI GAATGC 1 cut(s) 22
PkrI GCNGC 6 cut(s) 75, 78, 166, 169, 206, 218
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 90
PstI CTGCAG 1 cut(s) 78
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SacI GAGCTC 1 cut(s) 109
SatI GCNGC 6 cut(s) 74, 77, 165, 168, 205, 217
Sau3AI GATC 2 cut(s) 26, 130
Sau96I GGNCC 1 cut(s) 90
SchI GAGTC 1 cut(s) 191
SduI GDGCHC 2 cut(s) 45, 109
SetI ASST 3 cut(s) 81, 109, 209
SfcI CTRYAG 1 cut(s) 74
SfuI TTCGAA 1 cut(s) 14
Sse9I AATT 1 cut(s) 10
SsiI CCGC 5 cut(s) 162, 165, 168, 214, 217
SstI GAGCTC 1 cut(s) 109
TaqI TCGA 2 cut(s) 14, 99
TasI AATT 1 cut(s) 10
TauI GCSGC 3 cut(s) 167, 170, 219
TseI GCWGC 3 cut(s) 73, 76, 204
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.