Rmu_sc0021105.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021105.1
OG0016523
Physical Location & Seq
Reverse (-)
1 .. 1174
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021105.1_g000001.1.cds

Sequence Viewer

Length: 212 bp
atgaaggagaggaggaatgtgaatgcgatgagatcggcgctggtggtgctcggagcattggcatttgggtacctaactctgcagctaggattcaagccatatcttgaaagagcccaaattgctgctgaccaatctgagctctcttcttcctcagagcaactacaacaagaacaagaacaagaacaacccaactcgagctcaactcgccattt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.87

Weight (kDa)

5.71

Isoelectric Point (pI)

80.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63160 AT5G19151
fragaria_vesca FvH4_4g14770
malus_domestica MD13G1185300.v1.1
prunus_persica Prupe.1G152900_v2.0.a1
rosa_chinensis RchiOBHm_Chr0c32g0501461 RchiOBHm_Chr0c32g0501651
rosa_laevigata RLG00000007896 RLG00000023258
rosa_multiflora Rmu_sc0021105.1_g000001 Rmu_sc0028140.1_g000001
rosa_roxburghii Rroxscaffold_6G00398110
rosa_samantha Rh4DG209700
rosa_wichuraiana Rw4G017960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 69
AccB1I GGYRCC 1 cut(s) 69
AfaI GTAC 1 cut(s) 71
AgsI TTSAA 2 cut(s) 94, 107
AluBI AGCT 3 cut(s) 85, 139, 198
AluI AGCT 3 cut(s) 85, 139, 198
Alw21I GWGCWC 3 cut(s) 51, 141, 200
Ama87I CYCGRG 1 cut(s) 193
ApeKI GCWGC 2 cut(s) 82, 122
Asp718I GGTACC 1 cut(s) 69
AspLEI GCGC 1 cut(s) 40
AvaI CYCGRG 1 cut(s) 193
BanI GGYRCC 1 cut(s) 69
BanII GRGCYC 3 cut(s) 115, 141, 200
Bbv12I GWGCWC 3 cut(s) 51, 141, 200
BbvI GCAGC 2 cut(s) 94, 109
BfaI CTAG 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 41
BisI GCNGC 2 cut(s) 83, 123
BlsI GCNGC 2 cut(s) 84, 124
BmeT110I CYCGRG 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 71
BplI GAGNNNNNCTC 1 cut(s) 187
BseMII CTCAG 2 cut(s) 126, 165
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 2 cut(s) 94, 109
BshNI GGYRCC 1 cut(s) 69
BsiHKAI GWGCWC 3 cut(s) 51, 141, 200
BsiHKCI CYCGRG 1 cut(s) 193
BsmI GAATGC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 193
Bsp1286I GDGCHC 4 cut(s) 51, 115, 141, 200
Bsp143I GATC 1 cut(s) 32
BspCNI CTCAG 2 cut(s) 127, 164
BspLI GGNNCC 1 cut(s) 71
BspMAI CTGCAG 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 69
BssMI GATC 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 135, 151
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 35
BstMBI GATC 1 cut(s) 32
BstMWI GCNNNNNNNGC 3 cut(s) 46, 119, 204
BstSFI CTRYAG 1 cut(s) 80
BstV1I GCAGC 2 cut(s) 94, 109
BtgZI GCGATG 1 cut(s) 41
CfoI GCGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 70
CviJI RGCY 5 cut(s) 85, 97, 113, 139, 198
CviKI_1 RGCY 5 cut(s) 85, 97, 113, 139, 198
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 2 cut(s) 135, 151
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Ecl136II GAGCTC 2 cut(s) 139, 198
Eco24I GRGCYC 3 cut(s) 115, 141, 200
Eco53kI GAGCTC 2 cut(s) 139, 198
Eco88I CYCGRG 1 cut(s) 193
EcoICRI GAGCTC 2 cut(s) 139, 198
EcoT38I GRGCYC 3 cut(s) 115, 141, 200
FaiI YATR 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 83, 123
FriOI GRGCYC 3 cut(s) 115, 141, 200
Fsp4HI GCNGC 2 cut(s) 83, 123
FspBI CTAG 1 cut(s) 86
GlaI GCGC 1 cut(s) 39
GluI GCNGC 2 cut(s) 83, 123
HaeII RGCGCY 1 cut(s) 41
HhaI GCGC 1 cut(s) 40
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 1 cut(s) 90
Hpy188I TCNGA 3 cut(s) 53, 136, 154
Hpy188III TCNNGA 1 cut(s) 104
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 119, 204
HpyF3I CTNAG 2 cut(s) 135, 151
HspAI GCGC 1 cut(s) 38
KpnI GGTACC 1 cut(s) 73
Kzo9I GATC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 1 cut(s) 26
Lsp1109I GCAGC 2 cut(s) 94, 109
MaeI CTAG 1 cut(s) 86
MalI GATC 1 cut(s) 34
MboI GATC 1 cut(s) 32
MboII GAAGA 2 cut(s) 135, 138
MhlI GDGCHC 4 cut(s) 51, 115, 141, 200
MluCI AATT 1 cut(s) 117
MnlI CCTC 3 cut(s) 3, 6, 160
Mva1269I GAATGC 1 cut(s) 28
MwoI GCNNNNNNNGC 3 cut(s) 46, 119, 204
NdeII GATC 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 71
PaeR7I CTCGAG 1 cut(s) 193
PctI GAATGC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 90
PkrI GCNGC 2 cut(s) 84, 124
Psp124BI GAGCTC 2 cut(s) 141, 200
PspN4I GGNNCC 1 cut(s) 71
PspXI VCTCGAGB 1 cut(s) 193
PstI CTGCAG 1 cut(s) 84
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SacI GAGCTC 2 cut(s) 141, 200
SatI GCNGC 2 cut(s) 83, 123
Sau3AI GATC 1 cut(s) 32
SduI GDGCHC 4 cut(s) 51, 115, 141, 200
SetI ASST 4 cut(s) 75, 87, 141, 200
SfcI CTRYAG 1 cut(s) 80
Sfr274I CTCGAG 1 cut(s) 193
SlaI CTCGAG 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 1 cut(s) 117
SspMI CTAG 1 cut(s) 86
SstI GAGCTC 2 cut(s) 141, 200
TaqI TCGA 1 cut(s) 194
TasI AATT 1 cut(s) 117
TfiI GAWTC 1 cut(s) 90
TseI GCWGC 2 cut(s) 82, 122
TspDTI ATGAA 1 cut(s) 17
XhoI CTCGAG 1 cut(s) 193
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.