RLG00000023258

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016523
Physical Location & Seq
Forward (+)
20708011 .. 20708364
354 bp
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UTR
Exon/CDS
Intron
RLM00000023258

Sequence Viewer

Length: 354 bp
ATGGGTTCGATAAAGTCCGTGGCTTTTTGCGTTGTGGAAGATGATATAGCCAACACCTGTAGTGGGTCCCCAGTTAAATTGCAAAACGGTGCCGCTTGGCTTAGTCTTTCCTTATTTTATAGACCTGGGAACTTTCGTTTGGGAAGGAAGGAGAGGAGGAATGTGAATGCGATGAGATCGGCGGTGGTGGTGCTCGGAGCATTGGCATTTGGGTACCTAACTCTGCAGCTCGAATTCAAGCCATATCTTGAAAGAGCCCAAATTGCTGCTGACCAATCTGAGCTCTCTTCTTCCTCAGAGCAACTACAACAAGAACAAGAACAACCCAACTCGAGCTCAACCAGCCATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.87

Weight (kDa)

6.56

Isoelectric Point (pI)

53.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63160 AT5G19151
fragaria_vesca FvH4_4g14770
malus_domestica MD13G1185300.v1.1
prunus_persica Prupe.1G152900_v2.0.a1
rosa_chinensis RchiOBHm_Chr0c32g0501461 RchiOBHm_Chr0c32g0501651
rosa_laevigata RLG00000007896 RLG00000023258
rosa_multiflora Rmu_sc0021105.1_g000001 Rmu_sc0028140.1_g000001
rosa_roxburghii Rroxscaffold_6G00398110
rosa_samantha Rh4DG209700
rosa_wichuraiana Rw4G017960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 213
AccB1I GGYRCC 2 cut(s) 89, 213
AciI CCGC 2 cut(s) 93, 182
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 2 cut(s) 238, 251
AjnI CCWGG 1 cut(s) 124
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 3 cut(s) 229, 283, 336
AluI AGCT 3 cut(s) 229, 283, 336
Alw21I GWGCWC 3 cut(s) 195, 285, 338
Ama87I CYCGRG 1 cut(s) 331
ApeKI GCWGC 2 cut(s) 226, 266
ApoI RAATTY 1 cut(s) 233
Asp718I GGTACC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 66
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 1 cut(s) 66
BanI GGYRCC 2 cut(s) 89, 213
BanII GRGCYC 3 cut(s) 259, 285, 338
Bbv12I GWGCWC 3 cut(s) 195, 285, 338
BbvI GCAGC 2 cut(s) 238, 253
BciT130I CCWGG 1 cut(s) 126
BfmI CTRYAG 2 cut(s) 58, 224
BisI GCNGC 3 cut(s) 93, 227, 267
BlsI GCNGC 3 cut(s) 94, 228, 268
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 66
BmiI GGNNCC 4 cut(s) 67, 68, 91, 215
BmrFI CCNGG 1 cut(s) 126
BmrI ACTGGG 1 cut(s) 65
BmuI ACTGGG 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 18, 125
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 18, 125
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMII CTCAG 2 cut(s) 270, 309
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 2 cut(s) 238, 253
BshNI GGYRCC 2 cut(s) 89, 213
BsiHKAI GWGCWC 3 cut(s) 195, 285, 338
BsiHKCI CYCGRG 1 cut(s) 331
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 52
BsmI GAATGC 1 cut(s) 172
BsoBI CYCGRG 1 cut(s) 331
Bsp1286I GDGCHC 4 cut(s) 195, 259, 285, 338
Bsp143I GATC 1 cut(s) 176
BspACI CCGC 2 cut(s) 93, 182
BspCNI CTCAG 2 cut(s) 271, 308
BspLI GGNNCC 4 cut(s) 67, 68, 91, 215
BspMAI CTGCAG 1 cut(s) 228
BspT107I GGYRCC 2 cut(s) 89, 213
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 18, 125
BssMI GATC 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 292
BstDEI CTNAG 3 cut(s) 101, 279, 295
BstDSI CCRYGG 1 cut(s) 18
BstKTI GATC 1 cut(s) 179
BstMBI GATC 1 cut(s) 176
BstMWI GCNNNNNNNGC 2 cut(s) 263, 342
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 2 cut(s) 58, 224
BstV1I GCAGC 2 cut(s) 238, 253
BtgI CCRYGG 1 cut(s) 18
BtgZI GCGATG 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 214
CviJI RGCY 9 cut(s) 23, 50, 100, 229, 241, 257, 283, 336, 345
CviKI_1 RGCY 9 cut(s) 23, 50, 100, 229, 241, 257, 283, 336, 345
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 3 cut(s) 101, 279, 295
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
Ecl136II GAGCTC 2 cut(s) 283, 336
Eco24I GRGCYC 3 cut(s) 259, 285, 338
Eco47I GGWCC 1 cut(s) 66
Eco53kI GAGCTC 2 cut(s) 283, 336
Eco88I CYCGRG 1 cut(s) 331
EcoICRI GAGCTC 2 cut(s) 283, 336
EcoO109I RGGNCCY 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 124
EcoT38I GRGCYC 3 cut(s) 259, 285, 338
FaiI YATR 3 cut(s) 47, 120, 244
FaqI GGGAC 1 cut(s) 52
Fnu4HI GCNGC 3 cut(s) 93, 227, 267
FriOI GRGCYC 3 cut(s) 259, 285, 338
Fsp4HI GCNGC 3 cut(s) 93, 227, 267
GluI GCNGC 3 cut(s) 93, 227, 267
Hpy188I TCNGA 3 cut(s) 197, 280, 298
Hpy188III TCNNGA 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 138, 142
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 2 cut(s) 82, 226
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 342
HpyF3I CTNAG 3 cut(s) 101, 279, 295
KflI GGGWCCC 1 cut(s) 66
KpnI GGTACC 1 cut(s) 217
Kzo9I GATC 1 cut(s) 176
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 4 cut(s) 70, 84, 111, 138
Lsp1109I GCAGC 2 cut(s) 238, 253
MalI GATC 1 cut(s) 178
MboI GATC 1 cut(s) 176
MboII GAAGA 3 cut(s) 50, 279, 282
MhlI GDGCHC 4 cut(s) 195, 259, 285, 338
MluCI AATT 3 cut(s) 77, 233, 261
MnlI CCTC 3 cut(s) 147, 150, 304
MseI TTAA 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 126
Mva1269I GAATGC 1 cut(s) 172
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 263, 342
NdeII GATC 1 cut(s) 176
NlaIV GGNNCC 4 cut(s) 67, 68, 91, 215
PaeR7I CTCGAG 1 cut(s) 331
PctI GAATGC 1 cut(s) 172
PkrI GCNGC 3 cut(s) 94, 228, 268
PpuMI RGGWCCY 1 cut(s) 66
Psp124BI GAGCTC 2 cut(s) 285, 338
Psp5II RGGWCCY 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 4 cut(s) 67, 68, 91, 215
PspPI GGNCC 1 cut(s) 66
PspPPI RGGWCCY 1 cut(s) 66
PspXI VCTCGAGB 1 cut(s) 331
PstI CTGCAG 1 cut(s) 228
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SacI GAGCTC 2 cut(s) 285, 338
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 3 cut(s) 93, 227, 267
Sau3AI GATC 1 cut(s) 176
Sau96I GGNCC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 4 cut(s) 195, 259, 285, 338
SetI ASST 6 cut(s) 59, 127, 219, 231, 285, 338
SfcI CTRYAG 2 cut(s) 58, 224
Sfr274I CTCGAG 1 cut(s) 331
SinI GGWCC 1 cut(s) 66
SlaI CTCGAG 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 3 cut(s) 77, 233, 261
SsiI CCGC 2 cut(s) 93, 182
SstI GAGCTC 2 cut(s) 285, 338
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 3 cut(s) 8, 231, 332
TasI AATT 3 cut(s) 77, 233, 261
TauI GCSGC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseI GCWGC 2 cut(s) 226, 266
TspGWI ACGGA 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 66
XapI RAATTY 1 cut(s) 233
XhoI CTCGAG 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.