Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016523

Physical Location & Seq

Genomic Coordinates Forward (+)

22561036 .. 22561404

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007896

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGTTCATTAAAGTCCGCGGCTTTTTGCATTGTGGAAGATGATATAGCCAACACTTGTAGTGGGTCGCCAGTTAAATTGCAAAACGGTACCGTTTGGCTTAGTCTTTCATTATTTTTTGACCAAGGCACTTTCATTTGGGAAGGAAGGAGAGGAAAAATGAAGGAGAGGAGGAATGTGAATGCAATGAGATCGGTGGTGGTAGTGCTCGGAGCATTGGCATTTGGGTACCTAACTCTGCAGCTCGGATTCAAGCCATATCTTGAAAGAGCCCAAATTGCTGCTGACCAATCTGAGCTCTCTTCCTCCTCAGAGCAACAACAACAACAAGAAGAACAACCCAACTCGAGCTCAACCCGCCATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.55

Weight (kDa)

6.57

Isoelectric Point (pI)

60.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63160 AT5G19151
fragaria_vesca	FvH4_4g14770
malus_domestica	MD13G1185300.v1.1
prunus_persica	Prupe.1G152900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501461 RchiOBHm_Chr0c32g0501651
rosa_laevigata	RLG00000007896 RLG00000023258
rosa_multiflora	Rmu_sc0021105.1_g000001 Rmu_sc0028140.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398110
rosa_samantha	Rh4DG209700
rosa_wichuraiana	Rw4G017960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	89, 228
AccB1I	GGYRCC	2 cut(s)	89, 228
AccII	CGCG	1 cut(s)	20
AciI	CCGC	3 cut(s)	18, 20, 358
AfaI	GTAC	2 cut(s)	91, 230
AgsI	TTSAA	2 cut(s)	253, 266
AluBI	AGCT	3 cut(s)	244, 298, 351
AluI	AGCT	3 cut(s)	244, 298, 351
Alw21I	GWGCWC	3 cut(s)	210, 300, 353
Ama87I	CYCGRG	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	241, 281
Asp718I	GGTACC	2 cut(s)	89, 228
AvaI	CYCGRG	1 cut(s)	346
BanI	GGYRCC	2 cut(s)	89, 228
BanII	GRGCYC	3 cut(s)	274, 300, 353
Bbv12I	GWGCWC	3 cut(s)	210, 300, 353
BbvI	GCAGC	2 cut(s)	253, 268
BcgI	CGANNNNNNTGC	2 cut(s)	174, 208
BfmI	CTRYAG	1 cut(s)	239
BisI	GCNGC	3 cut(s)	21, 242, 282
BlsI	GCNGC	3 cut(s)	22, 243, 283
BmeT110I	CYCGRG	1 cut(s)	346
BmiI	GGNNCC	2 cut(s)	91, 230
BsaJI	CCNNGG	2 cut(s)	18, 124
Bse1I	ACTGG	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	18, 124
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	285, 324
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	2 cut(s)	184, 298
BseXI	GCAGC	2 cut(s)	253, 268
Bsh1236I	CGCG	1 cut(s)	20
BshNI	GGYRCC	2 cut(s)	89, 228
BsiHKAI	GWGCWC	3 cut(s)	210, 300, 353
BsiHKCI	CYCGRG	1 cut(s)	346
BsmI	GAATGC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	346
Bsp1286I	GDGCHC	4 cut(s)	210, 274, 300, 353
Bsp143I	GATC	1 cut(s)	191
BspACI	CCGC	3 cut(s)	18, 20, 358
BspCNI	CTCAG	2 cut(s)	286, 323
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	91, 230
BspMAI	CTGCAG	1 cut(s)	243
BspT107I	GGYRCC	2 cut(s)	89, 228
BsrDI	GCAATG	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	18, 124
BssMI	GATC	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	89, 94
Bst6I	CTCTTC	1 cut(s)	307
BstDEI	CTNAG	3 cut(s)	101, 294, 310
BstDSI	CCRYGG	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	20
BstKTI	GATC	1 cut(s)	194
BstMBI	GATC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 357
BstSFI	CTRYAG	1 cut(s)	239
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	253, 268
BtgI	CCRYGG	1 cut(s)	18
Cfr42I	CCGCGG	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	90, 229
CviJI	RGCY	8 cut(s)	23, 50, 100, 244, 256, 272, 298, 351
CviKI_1	RGCY	8 cut(s)	23, 50, 100, 244, 256, 272, 298, 351
CviQI	GTAC	2 cut(s)	90, 229
DdeI	CTNAG	3 cut(s)	101, 294, 310
DpnI	GATC	1 cut(s)	193
DpnII	GATC	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Ecl136II	GAGCTC	2 cut(s)	298, 351
Eco130I	CCWWGG	1 cut(s)	124
Eco24I	GRGCYC	3 cut(s)	274, 300, 353
Eco53kI	GAGCTC	2 cut(s)	298, 351
Eco88I	CYCGRG	1 cut(s)	346
EcoICRI	GAGCTC	2 cut(s)	298, 351
EcoT14I	CCWWGG	1 cut(s)	124
EcoT38I	GRGCYC	3 cut(s)	274, 300, 353
ErhI	CCWWGG	1 cut(s)	124
FaiI	YATR	2 cut(s)	47, 259
FauI	CCCGC	1 cut(s)	365
Fnu4HI	GCNGC	3 cut(s)	21, 242, 282
FriOI	GRGCYC	3 cut(s)	274, 300, 353
Fsp4HI	GCNGC	3 cut(s)	21, 242, 282
GluI	GCNGC	3 cut(s)	21, 242, 282
HinfI	GANTC	1 cut(s)	249
Hpy188I	TCNGA	4 cut(s)	212, 248, 295, 313
Hpy188III	TCNNGA	1 cut(s)	263
HpyAV	CCTTC	3 cut(s)	137, 141, 157
HpyCH4III	ACNGT	2 cut(s)	89, 94
HpyCH4V	TGCA	4 cut(s)	30, 82, 185, 241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 357
HpyF3I	CTNAG	3 cut(s)	101, 294, 310
KpnI	GGTACC	2 cut(s)	93, 232
KspI	CCGCGG	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	1 cut(s)	84
Lsp1109I	GCAGC	2 cut(s)	253, 268
MalI	GATC	1 cut(s)	193
MboI	GATC	1 cut(s)	191
MboII	GAAGA	3 cut(s)	50, 294, 344
MhlI	GDGCHC	4 cut(s)	210, 274, 300, 353
MluCI	AATT	2 cut(s)	77, 276
MnlI	CCTC	5 cut(s)	146, 162, 165, 316, 319
MseI	TTAA	2 cut(s)	11, 75
MspA1I	CMGCKG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	187
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	278, 357
NdeII	GATC	1 cut(s)	191
NlaIV	GGNNCC	2 cut(s)	91, 230
PaeR7I	CTCGAG	1 cut(s)	346
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	249
PkrI	GCNGC	3 cut(s)	22, 243, 283
Psp124BI	GAGCTC	2 cut(s)	300, 353
PspN4I	GGNNCC	2 cut(s)	91, 230
PspXI	VCTCGAGB	1 cut(s)	346
PstI	CTGCAG	1 cut(s)	243
RsaI	GTAC	2 cut(s)	91, 230
RsaNI	GTAC	2 cut(s)	90, 229
SacI	GAGCTC	2 cut(s)	300, 353
SacII	CCGCGG	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	11, 75
SatI	GCNGC	3 cut(s)	21, 242, 282
Sau3AI	GATC	1 cut(s)	191
SduI	GDGCHC	4 cut(s)	210, 274, 300, 353
SetI	ASST	4 cut(s)	234, 246, 300, 353
SfcI	CTRYAG	1 cut(s)	239
Sfr274I	CTCGAG	1 cut(s)	346
Sfr303I	CCGCGG	1 cut(s)	21
SgrBI	CCGCGG	1 cut(s)	21
SlaI	CTCGAG	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	2 cut(s)	77, 276
SsiI	CCGC	3 cut(s)	18, 20, 358
SstI	GAGCTC	2 cut(s)	300, 353
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	2 cut(s)	89, 94
TaqI	TCGA	1 cut(s)	347
TasI	AATT	2 cut(s)	77, 276
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	2 cut(s)	11, 75
Tru9I	TTAA	2 cut(s)	11, 75
TseI	GCWGC	2 cut(s)	241, 281
TspDTI	ATGAA	3 cut(s)	99, 124, 176
XhoI	CTCGAG	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.