Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0012714

Physical Location & Seq

Genomic Coordinates Reverse (-)

966926 .. 967180

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1009800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGCTTTTGGGTGACGTGGCAGCCCAAGGGGAGCGTTTGGTGGCCCTGTTTAATTGGAGGGATCCAAGGGCCGCGGAAATATTTGTGGTGTTTTGCGTGGTAGCTTCTTTGGTGTTTTACATGGTGCCATTCAAGGCCTTTGTGTTGGGGTCAGGGTTCTACTACTTGCGCCACCCACGGTTCCACGACGGCATGCCTTCGGTTCCCTCCAACTTTTTCGGGCGATTGCCGTCGCTCTCTGACCAGATTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0001505 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006836 GO:0006887 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016043 GO:0016079 GO:0016082 GO:0016192 GO:0017075 GO:0017156 GO:0019905 GO:0022607 GO:0023051 GO:0023052 GO:0023061 GO:0030133 GO:0030424 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031410 GO:0031982 GO:0032879 GO:0032940 GO:0033267 GO:0034622 GO:0042995 GO:0043005 GO:0043195 GO:0043226 GO:0043227 GO:0043229 GO:0043679 GO:0043933 GO:0044085 GO:0044306 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045055 GO:0045202 GO:0046903 GO:0046907 GO:0046928 GO:0048489 GO:0048786 GO:0050789 GO:0050794 GO:0050804 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051588 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060341 GO:0065003 GO:0065007 GO:0065008 GO:0070382 GO:0071840 GO:0071944 GO:0097458 GO:0097479 GO:0097480 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098916 GO:0099003 GO:0099177 GO:0099501 GO:0099503 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:0120025 GO:0120038 GO:0140029 GO:0150034 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

85

Amino Acids

9.52

Weight (kDa)

7.96

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRT_C	PF08372	2 - 84	2.8e-35	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48060
fragaria_vesca	FvH4_7g00550
malus_domestica	MD02G1316600.v1.1 MD07G1005400.v1.1 MD14G1009800.v1.1
prunus_persica	Prupe.2G007600_v2.0.a1
pyrus_communis	pycom02g26530 pycom07g00440
rosa_chinensis	RchiOBHm_Chr1g0314341
rosa_laevigata	RLG00000030765
rosa_multiflora	Rmu_sc0000343.1_g000010 Rmu_sc0002833.1_g000008
rosa_roxburghii	Rroxscaffold_4G00331940
rosa_rugosa	Rorug01G0001200
rosa_samantha	Rh1AG010300 Rh1BG003200 Rh1DG005700
rosa_wichuraiana	Rw1G000480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AccII	CGCG	1 cut(s)	74
AciI	CCGC	2 cut(s)	72, 74
AclWI	GGATC	2 cut(s)	56, 69
AgsI	TTSAA	1 cut(s)	133
AjiI	CACGTC	1 cut(s)	16
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
AlwI	GGATC	2 cut(s)	56, 69
AoxI	GGCC	3 cut(s)	42, 69, 135
ApeKI	GCWGC	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	43, 69
AsuHPI	GGTGA	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	32
BceAI	ACGGC	2 cut(s)	205, 214
BisI	GCNGC	2 cut(s)	21, 72
BlsI	GCNGC	2 cut(s)	22, 73
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	43, 69
BmiI	GGNNCC	4 cut(s)	63, 126, 182, 204
BsaJI	CCNNGG	4 cut(s)	25, 65, 72, 176
BseDI	CCNNGG	4 cut(s)	25, 65, 72, 176
BseXI	GCAGC	1 cut(s)	32
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	3 cut(s)	44, 71, 137
BshNI	GGYRCC	1 cut(s)	124
BsnI	GGCC	3 cut(s)	44, 71, 137
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	2 cut(s)	72, 74
BspANI	GGCC	3 cut(s)	44, 71, 137
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	4 cut(s)	63, 126, 182, 204
BspPI	GGATC	2 cut(s)	56, 69
BspT107I	GGYRCC	1 cut(s)	124
BssECI	CCNNGG	4 cut(s)	25, 65, 72, 176
BssMI	GATC	1 cut(s)	61
BssT1I	CCWWGG	2 cut(s)	25, 65
Bst4CI	ACNGT	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	194
BstDSI	CCRYGG	2 cut(s)	72, 176
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	196
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	44, 71, 137
BtgI	CCRYGG	2 cut(s)	72, 176
BtrI	CACGTC	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	194
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	43, 69
Cfr42I	CCGCGG	1 cut(s)	75
CviAII	CATG	2 cut(s)	121, 193
CviJI	RGCY	5 cut(s)	23, 44, 71, 104, 137
CviKI_1	RGCY	5 cut(s)	23, 44, 71, 104, 137
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eco130I	CCWWGG	2 cut(s)	25, 65
Eco147I	AGGCCT	1 cut(s)	137
EcoT14I	CCWWGG	2 cut(s)	25, 65
ErhI	CCWWGG	2 cut(s)	25, 65
FaeI	CATG	2 cut(s)	124, 196
FaiI	YATR	3 cut(s)	122, 194, 251
FatI	CATG	2 cut(s)	120, 192
Fnu4HI	GCNGC	2 cut(s)	21, 72
Fsp4HI	GCNGC	2 cut(s)	21, 72
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	2 cut(s)	21, 72
HaeIII	GGCC	3 cut(s)	44, 71, 137
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	124, 196
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HphI	GGTGA	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	241
Hpy99I	CGWCG	2 cut(s)	191, 235
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4IV	ACGT	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	124, 196
HspAI	GCGC	1 cut(s)	169
KspI	CCGCGG	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	2 cut(s)	59, 138
Lsp1109I	GCAGC	1 cut(s)	32
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MflI	RGATCY	1 cut(s)	61
MluCI	AATT	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	2 cut(s)	51, 217
MseI	TTAA	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	74
MvnI	CGCG	1 cut(s)	74
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	124, 196
NlaIV	GGNNCC	4 cut(s)	63, 126, 182, 204
NmuCI	GTSAC	1 cut(s)	11
NspI	RCATGY	1 cut(s)	196
PaeI	GCATGC	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	22, 73
PspN4I	GGNNCC	4 cut(s)	63, 126, 182, 204
PspPI	GGNCC	2 cut(s)	43, 69
PsuI	RGATCY	1 cut(s)	61
SacII	CCGCGG	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	2 cut(s)	21, 72
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	2 cut(s)	43, 69
SetI	ASST	2 cut(s)	18, 106
Sfr303I	CCGCGG	1 cut(s)	75
SgrBI	CCGCGG	1 cut(s)	75
SphI	GCATGC	1 cut(s)	196
Sse9I	AATT	1 cut(s)	52
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	2 cut(s)	72, 74
SspI	AATATT	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	137
StyI	CCWWGG	2 cut(s)	25, 65
TaaI	ACNGT	1 cut(s)	180
TaiI	ACGT	1 cut(s)	18
TasI	AATT	1 cut(s)	52
TauI	GCSGC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	11
XceI	RCATGY	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.