MD14G1073300.v1.1

Chromatin organization modifier domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0020124
Physical Location & Seq
Forward (+)
8142012 .. 8142748
737 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1073300.v1.1.491

Sequence Viewer

Length: 462 bp
ATGAAACAGCAAGCCGATAAACATCGAACTGAGAGGTCTTTTGAGGTTGGAGATATGGTTTTTCTGCGATTGGTACCTTATCACCACCAATCACTTGCTAAACATCCCTTTCATAAGCTTCAGCCACGGTTTTATGGTCCATTTAAGGTGTTGCAGAAGATTGGTCACGTGGCTTATAAAATTGACTTACCTGCCACATCCAAACTTCACCCAGTTTTTCATGTTTCATGCTTGAAGAAACAGTTGGGCTCTGATATCATTCCTGCAGTTCCATTACCTGTAGTTACAGAGGATGGACTCTTGGAGGATTATCCATTGGCAATATTGAGGCGGAGGTTAACGGGTCATGGCAGTTCATCTATGACTGAGGTTTTGGTGCAATGGAAGCATCGGCCTAAGGAGGATGCGACCTGGGAAAATTATGCAGAGTTTGTCAACAGGTTTCCTGCATTCCAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo

Protein Analysis

154

Amino Acids

17.7

Weight (kDa)

9.52

Isoelectric Point (pI)

64.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 17 - 80 2.5e-23 Tf2-1-like, SH3 domain
Integrase_p58_C PF22938 46 - 80 1.9e-06 Integrase p58, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020124)

Species Orthologous Gene IDs
malus_domestica MD14G1073300.v1.1
pyrus_communis pycom08g08560 pycom16g15850
rosa_wichuraiana Rw1G019750 Rw5G013010 Rw5G048260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 199
Acc65I GGTACC 1 cut(s) 73
AccB1I GGYRCC 1 cut(s) 73
AciI CCGC 1 cut(s) 331
AcuI CTGAAG 1 cut(s) 104
AcvI CACGTG 1 cut(s) 169
AfaI GTAC 1 cut(s) 75
AgsI TTSAA 1 cut(s) 235
AjnI CCWGG 1 cut(s) 410
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
AoxI GGCC 1 cut(s) 392
ArsI GACNNNNNNTTYG 2 cut(s) 355, 387
Asp718I GGTACC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 74, 200
AvaII GGWCC 1 cut(s) 137
AxyI CCTNAGG 1 cut(s) 396
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 251
BbrPI CACGTG 1 cut(s) 169
BccI CCATC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 412
BfmI CTRYAG 2 cut(s) 264, 279
BfuAI ACCTGC 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 412
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 412
BmrI ACTGGG 1 cut(s) 206
BmsI GCATC 2 cut(s) 394, 397
BmuI ACTGGG 1 cut(s) 206
BsaAI YACGTR 1 cut(s) 169
BsaBI GATNNNNATC 1 cut(s) 21
BsaJI CCNNGG 2 cut(s) 125, 411
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bse1I ACTGG 1 cut(s) 212
Bse21I CCTNAGG 1 cut(s) 396
Bse3DI GCAATG 1 cut(s) 386
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 1 cut(s) 412
BseDI CCNNGG 2 cut(s) 125, 411
BseGI GGATG 4 cut(s) 103, 197, 298, 409
BseJI GATNNNNATC 1 cut(s) 21
BseMI GCAATG 1 cut(s) 386
BseMII CTCAG 2 cut(s) 21, 357
BseNI ACTGG 1 cut(s) 212
BshFI GGCC 1 cut(s) 394
BshNI GGYRCC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 449
BsnI GGCC 1 cut(s) 394
Bsp1286I GDGCHC 1 cut(s) 251
BspACI CCGC 1 cut(s) 331
BspANI GGCC 1 cut(s) 394
BspCNI CTCAG 2 cut(s) 22, 358
BspLI GGNNCC 1 cut(s) 75
BspMAI CTGCAG 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 386
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 125, 411
Bst2UI CCWGG 1 cut(s) 412
Bst4CI ACNGT 2 cut(s) 129, 243
BstBAI YACGTR 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 3 cut(s) 30, 366, 396
BstDSI CCRYGG 1 cut(s) 125
BstF5I GGATG 4 cut(s) 103, 197, 298, 409
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstNI CCWGG 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 410
BstSFI CTRYAG 2 cut(s) 264, 279
Bsu36I CCTNAGG 1 cut(s) 396
BsuRI GGCC 1 cut(s) 394
BtgI CCRYGG 1 cut(s) 125
BtsCI GGATG 4 cut(s) 103, 197, 298, 409
BveI ACCTGC 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 74
CviAII CATG 3 cut(s) 221, 228, 347
CviJI RGCY 6 cut(s) 14, 118, 124, 173, 249, 394
CviKI_1 RGCY 6 cut(s) 14, 118, 124, 173, 249, 394
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 3 cut(s) 30, 366, 396
EciI GGCGGA 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 251
Eco32I GATATC 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 104
Eco72I CACGTG 1 cut(s) 169
Eco81I CCTNAGG 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 410
EcoRV GATATC 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 251
FaeI CATG 3 cut(s) 224, 231, 350
FaiI YATR 9 cut(s) 56, 114, 135, 177, 222, 229, 348, 362, 423
FatI CATG 3 cut(s) 220, 227, 346
FokI GGATG 4 cut(s) 90, 184, 305, 416
FriOI GRGCYC 1 cut(s) 251
HaeIII GGCC 1 cut(s) 394
Hin1II CATG 3 cut(s) 224, 231, 350
HincII GTYRAC 2 cut(s) 339, 436
HindII GTYRAC 2 cut(s) 339, 436
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 1 cut(s) 297
HpaI GTTAAC 1 cut(s) 339
HphI GGTGA 2 cut(s) 74, 200
Hpy166II GTNNAC 2 cut(s) 339, 436
Hpy188I TCNGA 1 cut(s) 253
Hpy8I GTNNAC 2 cut(s) 339, 436
HpyCH4III ACNGT 2 cut(s) 129, 243
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 5 cut(s) 154, 266, 379, 425, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpyF3I CTNAG 3 cut(s) 30, 366, 396
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 3 cut(s) 224, 231, 350
KpnI GGTACC 1 cut(s) 77
KspAI GTTAAC 1 cut(s) 339
LpnPI CCDG 7 cut(s) 204, 225, 276, 291, 397, 424, 424
LweI GCATC 2 cut(s) 394, 397
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 164, 283
MboII GAAGA 2 cut(s) 169, 247
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 2 cut(s) 180, 418
MlyI GAGTC 1 cut(s) 291
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 8 cut(s) 27, 37, 283, 298, 321, 327, 361, 394
MseI TTAA 2 cut(s) 144, 338
MspR9I CCNGG 1 cut(s) 412
Mva1269I GAATGC 1 cut(s) 449
MvaI CCWGG 1 cut(s) 412
MwoI GCNNNNNNNGC 1 cut(s) 385
NlaIII CATG 3 cut(s) 224, 231, 350
NlaIV GGNNCC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 164
PctI GAATGC 1 cut(s) 449
PleI GAGTC 1 cut(s) 291
PmaCI CACGTG 1 cut(s) 169
PmlI CACGTG 1 cut(s) 169
PpsI GAGTC 1 cut(s) 291
Ppu21I YACGTR 1 cut(s) 169
PsiI TTATAA 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 410
PspCI CACGTG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 410
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 137
PstI CTGCAG 1 cut(s) 268
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SaqAI TTAA 2 cut(s) 144, 338
Sau96I GGNCC 1 cut(s) 137
SchI GAGTC 1 cut(s) 291
ScrFI CCNGG 1 cut(s) 412
SduI GDGCHC 1 cut(s) 251
SfaNI GCATC 2 cut(s) 394, 397
SfcI CTRYAG 2 cut(s) 264, 279
SinI GGWCC 1 cut(s) 137
Sse9I AATT 2 cut(s) 180, 418
SsiI CCGC 1 cut(s) 331
SspI AATATT 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 410
TaaI ACNGT 2 cut(s) 129, 243
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 25
TasI AATT 2 cut(s) 180, 418
Tru1I TTAA 2 cut(s) 144, 338
Tru9I TTAA 2 cut(s) 144, 338
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 5 cut(s) 17, 101, 209, 216, 345
VpaK11BI GGWCC 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.