pycom08g08560

Chromatin organization modifier domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0020124
Physical Location & Seq
Reverse (-)
6833199 .. 6834223
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g08560.2

Sequence Viewer

Length: 399 bp
ATGTCAGCTAAATTGGATACTGTGGAGCAAAACTTGCTAGAAAGGGATAAAATGTTGTCCATTCTCAAATCCAATTTGTCCTTAGCTCAAAACAGGATGAAGGTTCAAACGGATAAACACAGAACTAAGATGGAGTTTGCAGTTGGGGATCTGGTGTATTTCAAATTAGTTCCTTATCAGTTGCAGTCGCTTAATCCTCACTCTCATCACAAGCTACTACCAAGGTTGAGTCAGGATTTGGAATCGGGTCATAACAGGGACCTCTTCACCGGCACCGAGCAGCTCTACTACAAGCACTATGCCTCTCCGCCTCACGAACTCATCTGGGTCGGTGAACTTTTCCTCTCCTCCTCTCAGCTTCGCGAACCTTCTGCCTCCTCTGGCTCTGTCCAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo

Protein Analysis

133

Amino Acids

15.21

Weight (kDa)

8.02

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020124)

Species Orthologous Gene IDs
malus_domestica MD14G1073300.v1.1
pyrus_communis pycom08g08560 pycom16g15850
rosa_wichuraiana Rw1G019750 Rw5G013010 Rw5G048260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 272
AccII CGCG 1 cut(s) 363
AciI CCGC 1 cut(s) 308
AclWI GGATC 1 cut(s) 156
AfaI GTAC 1 cut(s) 395
AgsI TTSAA 2 cut(s) 107, 163
AluBI AGCT 5 cut(s) 8, 86, 214, 283, 358
AluI AGCT 5 cut(s) 8, 86, 214, 283, 358
AlwI GGATC 1 cut(s) 156
ApeKI GCWGC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 2 cut(s) 259, 344
AvaII GGWCC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 124
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciVI GTATCC 1 cut(s) 10
BfaI CTAG 1 cut(s) 38
BfuI GTATCC 1 cut(s) 10
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
BmcAI AGTACT 1 cut(s) 395
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 2 cut(s) 260, 274
Bpu10I CCTNAGC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 221
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 1 cut(s) 391
BseRI GAGGAG 3 cut(s) 337, 340, 367
BseXI GCAGC 1 cut(s) 292
Bsh1236I CGCG 1 cut(s) 363
BshNI GGYRCC 1 cut(s) 272
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 272
Bsp143I GATC 1 cut(s) 148
Bsp68I TCGCGA 1 cut(s) 363
BspACI CCGC 1 cut(s) 308
BspCNI CTCAG 1 cut(s) 367
BspFNI CGCG 1 cut(s) 363
BspLI GGNNCC 2 cut(s) 260, 274
BspPI GGATC 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 269
BsrI ACTGG 1 cut(s) 391
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 1 cut(s) 148
BssT1I CCWWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 269
BstAPI GCANNNNNTGC 1 cut(s) 34
BstDEI CTNAG 3 cut(s) 82, 126, 354
BstF5I GGATG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 363
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BsuI GTATCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 102
BtuMI TCGCGA 1 cut(s) 363
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 394
CviJI RGCY 6 cut(s) 8, 86, 214, 283, 358, 384
CviKI_1 RGCY 6 cut(s) 8, 86, 214, 283, 358, 384
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 3 cut(s) 82, 126, 354
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
EciI GGCGGA 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 259
EcoO109I RGGNCCY 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaiI YATR 2 cut(s) 252, 300
FaqI GGGAC 1 cut(s) 272
Fnu4HI GCNGC 1 cut(s) 281
FokI GGATG 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 281
FspBI CTAG 1 cut(s) 38
GluI GCNGC 1 cut(s) 281
HapII CCGG 1 cut(s) 270
HinfI GANTC 2 cut(s) 229, 242
HpaII CCGG 1 cut(s) 270
HphI GGTGA 2 cut(s) 259, 344
Hpy166II GTNNAC 1 cut(s) 335
Hpy188III TCNNGA 3 cut(s) 233, 314, 362
Hpy8I GTNNAC 1 cut(s) 335
HpyAV CCTTC 2 cut(s) 94, 378
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 140, 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 3 cut(s) 82, 126, 354
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 7 cut(s) 79, 137, 218, 241, 283, 310, 366
Lsp1109I GCAGC 1 cut(s) 292
MaeI CTAG 1 cut(s) 38
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 1 cut(s) 256
MflI RGATCY 1 cut(s) 148
MluCI AATT 3 cut(s) 11, 73, 164
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 9 cut(s) 207, 272, 313, 321, 353, 358, 361, 385, 388
MseI TTAA 1 cut(s) 192
MspI CCGG 1 cut(s) 270
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeII GATC 1 cut(s) 148
NlaIV GGNNCC 2 cut(s) 260, 274
NruI TCGCGA 1 cut(s) 363
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 1 cut(s) 282
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 260, 274
PspPI GGNCC 1 cut(s) 259
PspPPI RGGWCCY 1 cut(s) 259
PsuI RGATCY 1 cut(s) 148
RruI TCGCGA 1 cut(s) 363
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 259
ScaI AGTACT 1 cut(s) 395
SchI GAGTC 1 cut(s) 238
SetI ASST 9 cut(s) 10, 88, 105, 216, 227, 264, 285, 360, 370
SinI GGWCC 1 cut(s) 259
Sse9I AATT 3 cut(s) 11, 73, 164
SsiI CCGC 1 cut(s) 308
SspMI CTAG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 22
TasI AATT 3 cut(s) 11, 73, 164
TatI WGTACW 1 cut(s) 393
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseI GCWGC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 113
TspGWI ACGGA 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 259
XspI CTAG 1 cut(s) 38
ZrmI AGTACT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.