MD14G1171500.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0018438
Physical Location & Seq
Forward (+)
26533739 .. 26534818
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1171500.v1.1.491

Sequence Viewer

Length: 1080 bp
ATGGCGTGGAATTCGATGGTGGCAGGCTACTTGAAGATCGAATGTTGGGGAGATGTCATGACGCTATTCGTTGAAATGTTAAAATTGGGTTTTGGGTTTGATGAGGTTACTTTGATTAGTGTTTTGACAGCATGTGGGAGACTGGCCAATTTGGAGCTGGGAGAGTGGATTGGTGAGTATATAGAAGCAAATGGGCTGAAGGGTAACATTGTATTAGTCACTTCTCTGGTTGATATGTATGCAAAATGTGGTCAGGTAGATACTGCAAGACAATTATTTGATCGAATGGATCGAAGATATAATGTTGCGTGGAGTGCCATGATTTCAGGTTATAGCCAAGCAGATAGGTGCAGGGAGGCGCTTGGTCTGTTTCATGACATGCAGAAGGCAAATGTGGATCCCAATGAGGTGACCTTGGTCAGTGTGCTTTCGTCCTGTGCTGTCCTCGGAGCTTTGGAAACTGGAAAATGGGTTGAGTTTTATATAATGAAGAAGAAAATGAAGCTCACAGTTACCCTTGGAACTACACTAATAGATTTCTATGCAAAATGTGGGTGCGTTGATAGTTCAATTGAAGTATTTAACAGGATGCCTTTGGTAAACCTTATCTCTTGGACAGTGCTAATTCAAGGTCTTGCTAGTAATGGACAGGGCATGAGAGCGCTTGAATACTTCCAATTGATGCAGGAGAAGAATATCAAGCCAAATTATGTGACTTTCATTGCCGTTCCTTCTGCCTGTGGCCACGCAGGTCTGGTTGATGAGGGTCGAAATCTTTTTACCCGCATGAGTAGAGATTTCGGAATTGAACCGAGGATAGAGCACTATGGTTCTATGGTTGATATCTTGGGTCGAGCTGGTTTGATTGAAGAGGCATATCAGTTCATCAAGAATATGCCTATCCAACCAAATGTTGTGGTTTGGAGGACATTGATGGCTTCATGCAGAACACAGAAGAATGTCGAAATTGGTGAGGAATCGTTGAAACGCATAACGAGATTCGAGACCCCTCATAGCAGGGATTACATTCTGCTCTCAAACATTTATGCATCGGTAGGCAGGACTGAGGTTCTTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

360

Amino Acids

40.41

Weight (kDa)

6.17

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 102 - 131 1.2e-07 PPR repeat
PPR_2 PF13041 102 - 147 4.2e-10 PPR repeat family
PPR_3 PF13812 200 - 248 5.8e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 201 - 241 1.6e-07 PPR repeat family
PPR PF01535 203 - 233 7.5e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018438)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06290
malus_domestica MD14G1171500.v1.1
prunus_persica Prupe.5G165600_v2.0.a1
pyrus_communis pycom14g14320
rosa_chinensis RchiOBHm_Chr7g0192571
rosa_laevigata RLG00000004351
rosa_multiflora Rmu_sc0003108.1_g000042
rosa_rugosa Rorug07G0002200
rosa_samantha Rh7BG129100
rosa_wichuraiana Rw7G010890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 740
AciI CCGC 1 cut(s) 784
AclWI GGATC 3 cut(s) 297, 392, 405
AcoI YGGCCR 2 cut(s) 144, 742
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 218
AfeI AGCGCT 1 cut(s) 663
AgsI TTSAA 9 cut(s) 34, 74, 570, 575, 629, 668, 809, 869, 985
AluBI AGCT 4 cut(s) 157, 452, 505, 857
AluI AGCT 4 cut(s) 157, 452, 505, 857
Alw21I GWGCWC 1 cut(s) 825
Alw26I GTCTC 2 cut(s) 133, 998
AlwI GGATC 3 cut(s) 297, 392, 405
Aor51HI AGCGCT 1 cut(s) 663
AoxI GGCC 2 cut(s) 144, 742
ApoI RAATTY 1 cut(s) 10
AspLEI GCGC 2 cut(s) 361, 664
AsuHPI GGTGA 3 cut(s) 185, 421, 983
BalI TGGCCA 2 cut(s) 146, 744
BamHI GGATCC 1 cut(s) 397
Bbv12I GWGCWC 1 cut(s) 825
BccI CCATC 2 cut(s) 10, 928
BceAI ACGGC 1 cut(s) 710
BcoDI GTCTC 2 cut(s) 133, 998
BfaI CTAG 1 cut(s) 639
BfoI RGCGCY 2 cut(s) 362, 665
BfuAI ACCTGC 1 cut(s) 740
BmiI GGNNCC 1 cut(s) 399
BmsI GCATC 3 cut(s) 579, 672, 1058
BoxI GACNNNNGTC 1 cut(s) 416
BsaI GGTCTC 1 cut(s) 998
BsaJI CCNNGG 4 cut(s) 414, 445, 517, 812
Bse1I ACTGG 2 cut(s) 147, 466
Bse3DI GCAATG 1 cut(s) 720
BseDI CCNNGG 4 cut(s) 414, 445, 517, 812
BseGI GGATG 1 cut(s) 594
BseMI GCAATG 1 cut(s) 720
BseMII CTCAG 1 cut(s) 1056
BseNI ACTGG 2 cut(s) 147, 466
BseYI CCCAGC 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 370
BshFI GGCC 2 cut(s) 146, 744
BsiHKAI GWGCWC 1 cut(s) 825
BsmAI GTCTC 2 cut(s) 133, 998
BsnI GGCC 2 cut(s) 146, 744
Bso31I GGTCTC 1 cut(s) 998
Bsp1286I GDGCHC 1 cut(s) 825
Bsp143I GATC 4 cut(s) 36, 280, 289, 397
BspACI CCGC 1 cut(s) 784
BspANI GGCC 2 cut(s) 146, 744
BspCNI CTCAG 1 cut(s) 1057
BspHI TCATGA 2 cut(s) 57, 373
BspLI GGNNCC 1 cut(s) 399
BspMI ACCTGC 1 cut(s) 740
BspPI GGATC 3 cut(s) 297, 392, 405
BspTNI GGTCTC 1 cut(s) 998
BsrDI GCAATG 1 cut(s) 720
BsrI ACTGG 2 cut(s) 147, 466
BssECI CCNNGG 4 cut(s) 414, 445, 517, 812
BssMI GATC 4 cut(s) 36, 280, 289, 397
BssT1I CCWWGG 2 cut(s) 414, 517
Bst4CI ACNGT 2 cut(s) 511, 619
Bst6I CTCTTC 1 cut(s) 864
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 1 cut(s) 1065
BstEII GGTNACC 1 cut(s) 409
BstF5I GGATG 1 cut(s) 594
BstH2I RGCGCY 2 cut(s) 362, 665
BstHHI GCGC 2 cut(s) 361, 664
BstKTI GATC 4 cut(s) 39, 283, 292, 400
BstMAI GTCTC 2 cut(s) 133, 998
BstMBI GATC 4 cut(s) 36, 280, 289, 397
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNSI RCATGY 2 cut(s) 135, 382
BstPAI GACNNNNGTC 1 cut(s) 416
BstPI GGTNACC 1 cut(s) 409
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
BsuRI GGCC 2 cut(s) 146, 744
BtsCI GGATG 1 cut(s) 594
BtsIMutI CAGTG 2 cut(s) 427, 624
BveI ACCTGC 1 cut(s) 740
Cac8I GCNNGC 1 cut(s) 25
CciI TCATGA 2 cut(s) 57, 373
CfoI GCGC 2 cut(s) 361, 664
CseI GACGC 1 cut(s) 70
CspCI CAANNNNNGTGG 2 cut(s) 897, 932
CviAII CATG 8 cut(s) 58, 132, 319, 374, 379, 655, 787, 942
DdeI CTNAG 1 cut(s) 1065
DpnI GATC 4 cut(s) 38, 282, 291, 399
DpnII GATC 4 cut(s) 36, 280, 289, 397
EaeI YGGCCR 2 cut(s) 144, 742
Eam1104I CTCTTC 1 cut(s) 864
EarI CTCTTC 1 cut(s) 864
Eco130I CCWWGG 2 cut(s) 414, 517
Eco31I GGTCTC 1 cut(s) 998
Eco32I GATATC 1 cut(s) 844
Eco47III AGCGCT 1 cut(s) 663
Eco57I CTGAAG 1 cut(s) 218
Eco91I GGTNACC 1 cut(s) 409
EcoO65I GGTNACC 1 cut(s) 409
EcoRI GAATTC 1 cut(s) 10
EcoRV GATATC 1 cut(s) 844
EcoT14I CCWWGG 2 cut(s) 414, 517
EcoT22I ATGCAT 1 cut(s) 1051
ErhI CCWWGG 2 cut(s) 414, 517
FaeI CATG 8 cut(s) 61, 135, 322, 377, 382, 658, 790, 945
FatI CATG 8 cut(s) 57, 131, 318, 373, 378, 654, 786, 941
FauI CCCGC 1 cut(s) 791
FokI GGATG 1 cut(s) 601
FspBI CTAG 1 cut(s) 639
GlaI GCGC 2 cut(s) 360, 663
GsaI CCCAGC 1 cut(s) 161
HaeII RGCGCY 2 cut(s) 362, 665
HaeIII GGCC 2 cut(s) 146, 744
HgaI GACGC 1 cut(s) 70
HhaI GCGC 2 cut(s) 361, 664
Hin1II CATG 8 cut(s) 61, 135, 322, 377, 382, 658, 790, 945
Hin6I GCGC 2 cut(s) 359, 662
HinP1I GCGC 2 cut(s) 359, 662
HinfI GANTC 2 cut(s) 977, 999
HphI GGTGA 3 cut(s) 185, 421, 983
Hpy166II GTNNAC 1 cut(s) 601
Hpy188I TCNGA 2 cut(s) 449, 803
Hpy188III TCNNGA 4 cut(s) 58, 374, 889, 1003
Hpy8I GTNNAC 1 cut(s) 601
HpyAV CCTTC 3 cut(s) 193, 379, 741
HpyCH4III ACNGT 2 cut(s) 511, 619
HpyCH4V TGCA 8 cut(s) 242, 266, 351, 382, 545, 685, 945, 1049
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 1 cut(s) 1065
Hsp92II CATG 8 cut(s) 61, 135, 322, 377, 382, 658, 790, 945
HspAI GCGC 2 cut(s) 359, 662
Kzo9I GATC 4 cut(s) 36, 280, 289, 397
LmnI GCTCC 2 cut(s) 154, 449
LweI GCATC 3 cut(s) 579, 672, 1058
MaeI CTAG 1 cut(s) 639
MaeIII GTNAC 6 cut(s) 106, 203, 217, 409, 511, 712
MalI GATC 4 cut(s) 38, 282, 291, 399
MboI GATC 4 cut(s) 36, 280, 289, 397
MboII GAAGA 8 cut(s) 46, 306, 502, 505, 703, 881, 967, 1064
MfeI CAATTG 2 cut(s) 570, 677
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 1 cut(s) 825
MlsI TGGCCA 2 cut(s) 146, 744
MluNI TGGCCA 2 cut(s) 146, 744
MmeI TCCRAC 1 cut(s) 928
Mox20I TGGCCA 2 cut(s) 146, 744
Mph1103I ATGCAT 1 cut(s) 1051
MscI TGGCCA 2 cut(s) 146, 744
MseI TTAA 2 cut(s) 80, 582
Msp20I TGGCCA 2 cut(s) 146, 744
MunI CAATTG 2 cut(s) 570, 677
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 4 cut(s) 36, 280, 289, 397
NlaIII CATG 8 cut(s) 61, 135, 322, 377, 382, 658, 790, 945
NlaIV GGNNCC 1 cut(s) 399
NmuCI GTSAC 3 cut(s) 217, 409, 712
NsiI ATGCAT 1 cut(s) 1051
NspI RCATGY 2 cut(s) 135, 382
PagI TCATGA 2 cut(s) 57, 373
PcsI WCGNNNNNNNCGW 1 cut(s) 289
PfeI GAWTC 2 cut(s) 977, 999
PshAI GACNNNNGTC 1 cut(s) 416
PspEI GGTNACC 1 cut(s) 409
PspFI CCCAGC 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 399
PsuI RGATCY 1 cut(s) 397
SaqAI TTAA 2 cut(s) 80, 582
Sau3AI GATC 4 cut(s) 36, 280, 289, 397
SduI GDGCHC 1 cut(s) 825
SfaNI GCATC 3 cut(s) 579, 672, 1058
SsiI CCGC 1 cut(s) 784
SspMI CTAG 1 cut(s) 639
StyI CCWWGG 2 cut(s) 414, 517
TaaI ACNGT 2 cut(s) 511, 619
TaqI TCGA 8 cut(s) 14, 39, 283, 292, 769, 853, 963, 1002
TfiI GAWTC 2 cut(s) 977, 999
Tru1I TTAA 2 cut(s) 80, 582
Tru9I TTAA 2 cut(s) 80, 582
TscAI CASTG 2 cut(s) 427, 624
TseFI GTSAC 3 cut(s) 217, 409, 712
Tsp45I GTSAC 3 cut(s) 217, 409, 712
TspDTI ATGAA 6 cut(s) 362, 503, 515, 709, 874, 930
TspRI CASTG 2 cut(s) 427, 624
XapI RAATTY 1 cut(s) 10
XceI RCATGY 2 cut(s) 135, 382
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XspI CTAG 1 cut(s) 639
Zsp2I ATGCAT 1 cut(s) 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.