Rh7BG129100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0018438
Physical Location & Seq
Forward (+)
9525255 .. 9526712
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG129100.1

Sequence Viewer

Length: 1458 bp
ATGTTGGAGTCGGATATTGGGTTTGATGAGGTTACATTGATCAGTGTTTTGACAGCGTGTGGGAGAGTGGCGAATTTGGAACTGGGAGAGTGGATTGGTGGGTATATAGAGGCAAATGGGTTGAAGGGTAACATTGCTTTGGTTACTTCTCTGGTTGATATGTATGCAAAATGTGGTCAAGTGGATAAAGCAAGACTAATATTTGATGGAATGGACAGGAGAGATGTTGTTGCGTGGAGTGCGATGATCTCTGGTTATGGCCAAGCAAATAGATGCAGGGAGGCGCTTGACCTGTTTCACAACATGCAAAAGGCAAATGTAGATCCTAATGAGGTTACAATGGTTAGTGTGCTGTACTCCTGTGGTGTTCTTGGAGCTTTGGATACTGGTAAATGGGTTGACTTTTATGTAAAGAAGAAGAAAATGAAGCTTACTGTTACCCTCGGAACTGCATTGATAGATTTCTATGCAAAATGTGGTTGTGTGGATGATTCAGTTGAAGTGTTTAATAGAATGCCTTCAGTAAACGTCTTCTCGTGGACAGCACTAATTCAAGGACTCGCTAGTAACGGACAGGGGAAAAGGGCTCTTGAGTACTTCAAATTGATGCAGGAGAAGAACGTCAAACCAAATGATGTGACTTTTATTGCGGTTCTTTCTGCTTGTAGTCATGCAGGTTTGGTTGACGAGGGTCGAAATCTTTTTGTCCGCATGAACAAGGATTTTGGAATTGAACCAAGGATTGAGCACTACGGTTCTATGGTTGATATCTTGGGTCGAGCTGGGTTGATTGAAGAGGCATATCAGTTCATCAGGAACATGCCTATCCAACCCAATGCTGTTGTTTGGAGGACATTATTGGCTTCATGCAGAGCAAAGAAAAATGTTGAAATTGGCGAAGAAGCATTGCAACAGATAATCAGATTGGAGACCCCTCATAGCGGTGACTACATACTTCTGTCCAACATTTATGCATCTGCTGGTAGGCGCGAGGACGCTCTTAGAGTGAGAAATCAAATGAAAGAGGAGAGAATAGAGAAGGTGGCTCCTGGATGTAGCGTGATTCAGTTGGATGGAACGATTTATGAGTTCTTTGCAGAGAACAAGGTATATCCACACTCCGAGGAGGTTTACAATGCCACTCATGACATGATGAAACAGATCGGGGCAGCTGGTTATGTGCCCAACACAGCAGATGGAAGACTAGATGCAGAAGAAGATGATATGCAGCAAGCTTCAGTTTCTCACCACAGTGAGAAGTTGGCCATTGCATTTGGTCTTATCAGAACACGTCCTGGAACGACACTTAGAATATCGAAAAATCTTCGAGTTTGTATGGACTGCCACAATGCAACGAAGATAATATCAAAGGTTTTTAACAGAGAAATTATTGTTAGGGACTGGAACCGCTTCCATCATTTCAAAGAAGGGTCATGTTCCTGCAATGACTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

485

Amino Acids

54.36

Weight (kDa)

6.17

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 74 - 119 1.9e-11 PPR repeat family
PPR PF01535 77 - 106 2e-07 PPR repeat
PPR_3 PF13812 175 - 222 8.4e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 176 - 223 1.9e-11 PPR repeat family
PPR PF01535 178 - 208 1.1e-06 PPR repeat
E_motif PF20431 295 - 356 1.6e-18 E motif
DYW_deaminase PF14432 392 - 485 7.5e-37 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018438)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06290
malus_domestica MD14G1171500.v1.1
prunus_persica Prupe.5G165600_v2.0.a1
pyrus_communis pycom14g14320
rosa_chinensis RchiOBHm_Chr7g0192571
rosa_laevigata RLG00000004351
rosa_multiflora Rmu_sc0003108.1_g000042
rosa_rugosa Rorug07G0002200
rosa_samantha Rh7BG129100
rosa_wichuraiana Rw7G010890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 665
AccII CGCG 1 cut(s) 990
AciI CCGC 4 cut(s) 650, 709, 942, 1408
AclWI GGATC 1 cut(s) 317
AcoI YGGCCR 2 cut(s) 259, 1263
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 2 cut(s) 504, 1221
AfaI GTAC 2 cut(s) 356, 596
AfiI CCNNNNNNNGG 1 cut(s) 941
AflIII ACRYGT 1 cut(s) 1289
AgsI TTSAA 8 cut(s) 124, 500, 554, 601, 734, 794, 890, 1423
AjiI CACGTC 1 cut(s) 1292
AjnI CCWGG 2 cut(s) 1048, 1294
AleI CACNNNNGTG 1 cut(s) 1251
AluBI AGCT 5 cut(s) 377, 430, 782, 1172, 1235
AluI AGCT 5 cut(s) 377, 430, 782, 1172, 1235
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 1 cut(s) 923
AlwI GGATC 1 cut(s) 317
AoxI GGCC 2 cut(s) 259, 1263
ApeKI GCWGC 2 cut(s) 1169, 1228
ApoI RAATTY 1 cut(s) 73
Asp700I GAANNNNTTC 2 cut(s) 517, 1409
AspLEI GCGC 2 cut(s) 286, 990
AsuHPI GGTGA 2 cut(s) 956, 1238
BaeGI GKGCMC 1 cut(s) 1185
BalI TGGCCA 2 cut(s) 261, 1265
BanII GRGCYC 1 cut(s) 589
BauI CACGAG 1 cut(s) 535
BbsI GAAGAC 2 cut(s) 523, 1207
Bbv12I GWGCWC 1 cut(s) 750
BbvI GCAGC 2 cut(s) 1181, 1240
BccI CCATC 4 cut(s) 200, 1067, 1190, 1422
BciT130I CCWGG 2 cut(s) 1050, 1296
BciVI GTATCC 1 cut(s) 376
BclI TGATCA 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 923
BfaI CTAG 2 cut(s) 564, 1205
BfoI RGCGCY 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 665
BfuI GTATCC 1 cut(s) 376
BisI GCNGC 2 cut(s) 1170, 1229
BlsI GCNGC 2 cut(s) 1171, 1230
BmcAI AGTACT 1 cut(s) 596
Bme1390I CCNGG 2 cut(s) 1050, 1296
BmgBI CACGTC 1 cut(s) 1292
BmiI GGNNCC 2 cut(s) 1047, 1406
BmrFI CCNGG 2 cut(s) 1050, 1296
BmrI ACTGGG 1 cut(s) 92
BmsI GCATC 4 cut(s) 263, 597, 983, 1198
BmuI ACTGGG 1 cut(s) 92
BoxI GACNNNNGTC 1 cut(s) 690
BpiI GAAGAC 2 cut(s) 523, 1207
BpuEI CTTGAG 1 cut(s) 611
BsaI GGTCTC 1 cut(s) 923
BsaJI CCNNGG 3 cut(s) 442, 737, 1122
Bsc4I CCNNNNNNNGG 1 cut(s) 941
Bse1I ACTGG 3 cut(s) 87, 391, 1406
Bse3DI GCAATG 4 cut(s) 132, 905, 1266, 1450
BseBI CCWGG 2 cut(s) 1050, 1296
BseDI CCNNGG 3 cut(s) 442, 737, 1122
BseGI GGATG 3 cut(s) 493, 1058, 1078
BseLI CCNNNNNNNGG 1 cut(s) 941
BseMI GCAATG 4 cut(s) 132, 905, 1266, 1450
BseNI ACTGG 3 cut(s) 87, 391, 1406
BseRI GAGGAG 2 cut(s) 1040, 1139
BseSI GKGCMC 1 cut(s) 1185
BseXI GCAGC 2 cut(s) 1181, 1240
BseYI CCCAGC 1 cut(s) 782
Bsh1236I CGCG 1 cut(s) 990
BshFI GGCC 2 cut(s) 261, 1265
BsiHKAI GWGCWC 1 cut(s) 750
BslFI GGGAC 1 cut(s) 1412
BslI CCNNNNNNNGG 1 cut(s) 941
BsmAI GTCTC 1 cut(s) 923
BsmFI GGGAC 1 cut(s) 1412
BsmI GAATGC 1 cut(s) 519
BsnI GGCC 2 cut(s) 261, 1265
Bso31I GGTCTC 1 cut(s) 923
Bsp1286I GDGCHC 3 cut(s) 589, 750, 1185
Bsp143I GATC 4 cut(s) 39, 246, 322, 1161
BspACI CCGC 4 cut(s) 650, 709, 942, 1408
BspANI GGCC 2 cut(s) 261, 1265
BspFNI CGCG 1 cut(s) 990
BspHI TCATGA 1 cut(s) 1144
BspLI GGNNCC 2 cut(s) 1047, 1406
BspMI ACCTGC 1 cut(s) 665
BspPI GGATC 1 cut(s) 317
BspTNI GGTCTC 1 cut(s) 923
BsrDI GCAATG 4 cut(s) 132, 905, 1266, 1450
BsrI ACTGG 3 cut(s) 87, 391, 1406
BssECI CCNNGG 3 cut(s) 442, 737, 1122
BssMI GATC 4 cut(s) 39, 246, 322, 1161
BssSI CACGAG 1 cut(s) 535
BssT1I CCWWGG 1 cut(s) 737
Bst2BI CACGAG 1 cut(s) 535
Bst2UI CCWGG 2 cut(s) 1050, 1296
Bst4CI ACNGT 3 cut(s) 436, 755, 1253
Bst6I CTCTTC 1 cut(s) 789
BstC8I GCNNGC 1 cut(s) 1233
BstDEI CTNAG 2 cut(s) 1001, 1307
BstF5I GGATG 3 cut(s) 493, 1058, 1078
BstFNI CGCG 1 cut(s) 990
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 2 cut(s) 286, 990
BstKTI GATC 4 cut(s) 42, 249, 325, 1164
BstMAI GTCTC 1 cut(s) 923
BstMBI GATC 4 cut(s) 39, 246, 322, 1161
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 2 cut(s) 1050, 1296
BstNSI RCATGY 2 cut(s) 307, 823
BstPAI GACNNNNGTC 1 cut(s) 690
BstSCI CCNGG 2 cut(s) 1048, 1294
BstSLI GKGCMC 1 cut(s) 1185
BstUI CGCG 1 cut(s) 990
BstV1I GCAGC 2 cut(s) 1181, 1240
BstV2I GAAGAC 2 cut(s) 523, 1207
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 2 cut(s) 261, 1265
BtgZI GCGATG 1 cut(s) 257
BtrI CACGTC 1 cut(s) 1292
BtsCI GGATG 3 cut(s) 493, 1058, 1078
BtsIMutI CAGTG 2 cut(s) 49, 1258
BveI ACCTGC 1 cut(s) 665
Cac8I GCNNGC 1 cut(s) 1233
CciI TCATGA 1 cut(s) 1144
CfoI GCGC 2 cut(s) 286, 990
CseI GACGC 1 cut(s) 1004
Csp6I GTAC 2 cut(s) 355, 595
CviAII CATG 8 cut(s) 304, 671, 712, 820, 867, 1145, 1150, 1434
CviQI GTAC 2 cut(s) 355, 595
DdeI CTNAG 2 cut(s) 1001, 1307
DpnI GATC 4 cut(s) 41, 248, 324, 1163
DpnII GATC 4 cut(s) 39, 246, 322, 1161
EaeI YGGCCR 2 cut(s) 259, 1263
Eam1104I CTCTTC 1 cut(s) 789
EarI CTCTTC 1 cut(s) 789
Eco130I CCWWGG 1 cut(s) 737
Eco24I GRGCYC 1 cut(s) 589
Eco31I GGTCTC 1 cut(s) 923
Eco32I GATATC 1 cut(s) 769
Eco57I CTGAAG 2 cut(s) 504, 1221
EcoRII CCWGG 2 cut(s) 1048, 1294
EcoRV GATATC 1 cut(s) 769
EcoT14I CCWWGG 1 cut(s) 737
EcoT22I ATGCAT 1 cut(s) 976
EcoT38I GRGCYC 1 cut(s) 589
ErhI CCWWGG 1 cut(s) 737
FaeI CATG 8 cut(s) 307, 674, 715, 823, 870, 1148, 1153, 1437
FaqI GGGAC 1 cut(s) 1412
FatI CATG 8 cut(s) 303, 670, 711, 819, 866, 1144, 1149, 1433
FbaI TGATCA 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 1170, 1229
FokI GGATG 3 cut(s) 500, 1065, 1085
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 2 cut(s) 1170, 1229
FspBI CTAG 2 cut(s) 564, 1205
GlaI GCGC 2 cut(s) 285, 989
GluI GCNGC 2 cut(s) 1170, 1229
GsaI CCCAGC 1 cut(s) 786
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 2 cut(s) 261, 1265
HgaI GACGC 1 cut(s) 1004
HhaI GCGC 2 cut(s) 286, 990
Hin1II CATG 8 cut(s) 307, 674, 715, 823, 870, 1148, 1153, 1437
Hin6I GCGC 2 cut(s) 284, 988
HinP1I GCGC 2 cut(s) 284, 988
HincII GTYRAC 2 cut(s) 400, 685
HindII GTYRAC 2 cut(s) 400, 685
HindIII AAGCTT 2 cut(s) 428, 1233
HinfI GANTC 4 cut(s) 8, 491, 558, 1063
HphI GGTGA 2 cut(s) 956, 1238
Hpy166II GTNNAC 5 cut(s) 400, 526, 540, 685, 1132
Hpy188I TCNGA 5 cut(s) 13, 446, 923, 1123, 1286
Hpy188III TCNNGA 3 cut(s) 590, 814, 1145
Hpy8I GTNNAC 5 cut(s) 400, 526, 540, 685, 1132
HpyAV CCTTC 4 cut(s) 118, 528, 1033, 1421
HpyCH4III ACNGT 3 cut(s) 436, 755, 1253
HpyCH4IV ACGT 3 cut(s) 528, 621, 1291
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 2 cut(s) 1001, 1307
HpySE526I ACGT 3 cut(s) 528, 621, 1291
Hsp92II CATG 8 cut(s) 307, 674, 715, 823, 870, 1148, 1153, 1437
HspAI GCGC 2 cut(s) 284, 988
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 4 cut(s) 39, 246, 322, 1161
LmnI GCTCC 2 cut(s) 374, 1051
Lsp1109I GCAGC 2 cut(s) 1181, 1240
LweI GCATC 4 cut(s) 263, 597, 983, 1198
MaeI CTAG 2 cut(s) 564, 1205
MaeII ACGT 3 cut(s) 528, 621, 1291
MaeIII GTNAC 8 cut(s) 31, 128, 142, 334, 436, 566, 637, 944
MalI GATC 4 cut(s) 41, 248, 324, 1163
MboI GATC 4 cut(s) 39, 246, 322, 1161
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 3 cut(s) 589, 750, 1185
MlsI TGGCCA 2 cut(s) 261, 1265
MluCI AATT 6 cut(s) 73, 549, 602, 729, 891, 1386
MluNI TGGCCA 2 cut(s) 261, 1265
MlyI GAGTC 2 cut(s) 17, 552
MmeI TCCRAC 3 cut(s) 853, 987, 1050
Mox20I TGGCCA 2 cut(s) 261, 1265
Mph1103I ATGCAT 1 cut(s) 976
MroXI GAANNNNTTC 2 cut(s) 517, 1409
MscI TGGCCA 2 cut(s) 261, 1265
MseI TTAA 2 cut(s) 507, 1377
MslI CAYNNNNRTG 2 cut(s) 942, 1251
Msp20I TGGCCA 2 cut(s) 261, 1265
MspA1I CMGCKG 1 cut(s) 1172
MspR9I CCNGG 2 cut(s) 1050, 1296
Mva1269I GAATGC 1 cut(s) 519
MvaI CCWGG 2 cut(s) 1050, 1296
MvnI CGCG 1 cut(s) 990
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 4 cut(s) 39, 246, 322, 1161
NlaIII CATG 8 cut(s) 307, 674, 715, 823, 870, 1148, 1153, 1437
NlaIV GGNNCC 2 cut(s) 1047, 1406
NmuCI GTSAC 2 cut(s) 637, 944
NsiI ATGCAT 1 cut(s) 976
NspI RCATGY 2 cut(s) 307, 823
OliI CACNNNNGTG 1 cut(s) 1251
PagI TCATGA 1 cut(s) 1144
PctI GAATGC 1 cut(s) 519
PdmI GAANNNNTTC 2 cut(s) 517, 1409
PfeI GAWTC 2 cut(s) 491, 1063
PfoI TCCNGGA 2 cut(s) 1048, 1294
PkrI GCNGC 2 cut(s) 1171, 1230
PleI GAGTC 2 cut(s) 16, 552
PpsI GAGTC 2 cut(s) 16, 552
PshAI GACNNNNGTC 1 cut(s) 690
Psp6I CCWGG 2 cut(s) 1048, 1294
PspFI CCCAGC 1 cut(s) 782
PspGI CCWGG 2 cut(s) 1048, 1294
PspN4I GGNNCC 2 cut(s) 1047, 1406
PsuI RGATCY 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 1172
RsaI GTAC 2 cut(s) 356, 596
RsaNI GTAC 2 cut(s) 355, 595
RseI CAYNNNNRTG 2 cut(s) 942, 1251
SaqAI TTAA 2 cut(s) 507, 1377
SatI GCNGC 2 cut(s) 1170, 1229
Sau3AI GATC 4 cut(s) 39, 246, 322, 1161
ScaI AGTACT 1 cut(s) 596
SchI GAGTC 2 cut(s) 17, 552
ScrFI CCNGG 2 cut(s) 1050, 1296
SduI GDGCHC 3 cut(s) 589, 750, 1185
SfaNI GCATC 4 cut(s) 263, 597, 983, 1198
SmiMI CAYNNNNRTG 2 cut(s) 942, 1251
SmlI CTYRAG 1 cut(s) 590
SmoI CTYRAG 1 cut(s) 590
Sse9I AATT 6 cut(s) 73, 549, 602, 729, 891, 1386
SsiI CCGC 4 cut(s) 650, 709, 942, 1408
SspI AATATT 1 cut(s) 201
SspMI CTAG 2 cut(s) 564, 1205
StyD4I CCNGG 2 cut(s) 1048, 1294
StyI CCWWGG 1 cut(s) 737
TaaI ACNGT 3 cut(s) 436, 755, 1253
TaiI ACGT 3 cut(s) 531, 624, 1294
TaqI TCGA 4 cut(s) 694, 778, 1316, 1327
TasI AATT 6 cut(s) 73, 549, 602, 729, 891, 1386
TatI WGTACW 2 cut(s) 354, 594
TfiI GAWTC 2 cut(s) 491, 1063
Tru1I TTAA 2 cut(s) 507, 1377
Tru9I TTAA 2 cut(s) 507, 1377
TscAI CASTG 2 cut(s) 49, 1258
TseFI GTSAC 2 cut(s) 637, 944
TseI GCWGC 2 cut(s) 1169, 1228
Tsp45I GTSAC 2 cut(s) 637, 944
TspDTI ATGAA 6 cut(s) 440, 728, 799, 855, 1034, 1169
TspGWI ACGGA 1 cut(s) 585
TspRI CASTG 2 cut(s) 49, 1258
XapI RAATTY 1 cut(s) 73
XceI RCATGY 2 cut(s) 307, 823
XmnI GAANNNNTTC 2 cut(s) 517, 1409
XspI CTAG 2 cut(s) 564, 1205
ZrmI AGTACT 1 cut(s) 596
Zsp2I ATGCAT 1 cut(s) 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.