Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g06290 |
| malus_domestica | MD14G1171500.v1.1 |
| prunus_persica | Prupe.5G165600_v2.0.a1 |
| pyrus_communis | pycom14g14320 |
| rosa_chinensis | RchiOBHm_Chr7g0192571 |
| rosa_laevigata | RLG00000004351 |
| rosa_multiflora | Rmu_sc0003108.1_g000042 |
| rosa_rugosa | Rorug07G0002200 |
| rosa_samantha | Rh7BG129100 |
| rosa_wichuraiana | Rw7G010890 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 279 |
| Acc36I | ACCTGC | 1 cut(s) | 1313 |
| AccII | CGCG | 1 cut(s) | 1638 |
| AciI | CCGC | 6 cut(s) | 30, 201, 538, 596, 822, 2050 |
| AclWI | GGATC | 3 cut(s) | 870, 965, 978 |
| AcoI | YGGCCR | 2 cut(s) | 717, 1905 |
| AcsI | RAATTY | 2 cut(s) | 374, 583 |
| AcuI | CTGAAG | 2 cut(s) | 1094, 1863 |
| AdeI | CACNNNGTG | 1 cut(s) | 454 |
| AfaI | GTAC | 1 cut(s) | 1978 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1589 |
| AhlI | ACTAGT | 1 cut(s) | 689 |
| AjnI | CCWGG | 2 cut(s) | 1184, 1936 |
| AleI | CACNNNNGTG | 1 cut(s) | 1893 |
| AluBI | AGCT | 8 cut(s) | 310, 357, 637, 1025, 1078, 1430, 1817, 1877 |
| AluI | AGCT | 8 cut(s) | 310, 357, 637, 1025, 1078, 1430, 1817, 1877 |
| Alw21I | GWGCWC | 2 cut(s) | 1398, 1525 |
| Alw26I | GTCTC | 4 cut(s) | 111, 827, 1571, 1587 |
| AlwI | GGATC | 3 cut(s) | 870, 965, 978 |
| AoxI | GGCC | 2 cut(s) | 717, 1905 |
| ApoI | RAATTY | 2 cut(s) | 374, 583 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 679, 711 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 327, 438, 638, 1245, 2051 |
| AspLEI | GCGC | 3 cut(s) | 934, 1013, 1638 |
| AsuC2I | CCSGG | 2 cut(s) | 154, 1695 |
| AsuHPI | GGTGA | 4 cut(s) | 169, 643, 758, 1556 |
| BaeGI | GKGCMC | 1 cut(s) | 1830 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 258, 291 |
| BalI | TGGCCA | 2 cut(s) | 719, 1907 |
| BamHI | GGATCC | 1 cut(s) | 970 |
| BanII | GRGCYC | 2 cut(s) | 571, 1237 |
| BbsI | GAAGAC | 2 cut(s) | 718, 1171 |
| Bbv12I | GWGCWC | 2 cut(s) | 1398, 1525 |
| BbvCI | CCTCAGC | 1 cut(s) | 1743 |
| BccI | CCATC | 4 cut(s) | 182, 545, 1712, 2064 |
| BceAI | ACGGC | 1 cut(s) | 525 |
| BciT130I | CCWGG | 2 cut(s) | 1186, 1938 |
| BciVI | GTATCC | 1 cut(s) | 1894 |
| BclI | TGATCA | 1 cut(s) | 144 |
| BcnI | CCSGG | 2 cut(s) | 154, 1695 |
| BcoDI | GTCTC | 4 cut(s) | 111, 827, 1571, 1587 |
| BcuI | ACTAGT | 1 cut(s) | 689 |
| BfaI | CTAG | 4 cut(s) | 387, 690, 1212, 1850 |
| BfoI | RGCGCY | 1 cut(s) | 935 |
| BfuAI | ACCTGC | 1 cut(s) | 1313 |
| BfuI | GTATCC | 1 cut(s) | 1894 |
| BisI | GCNGC | 1 cut(s) | 201 |
| BlsI | GCNGC | 1 cut(s) | 202 |
| Bme1390I | CCNGG | 4 cut(s) | 154, 1186, 1695, 1938 |
| BmiI | GGNNCC | 5 cut(s) | 158, 296, 972, 1692, 2048 |
| BmrFI | CCNGG | 4 cut(s) | 154, 1186, 1695, 1938 |
| BmrI | ACTGGG | 2 cut(s) | 668, 740 |
| BmsI | GCATC | 7 cut(s) | 911, 1152, 1245, 1631, 1633, 1831, 1843 |
| BmuI | ACTGGG | 2 cut(s) | 668, 740 |
| BpiI | GAAGAC | 2 cut(s) | 718, 1171 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1743 |
| BpuEI | CTTGAG | 2 cut(s) | 548, 755 |
| BpuMI | CCSGG | 2 cut(s) | 154, 1695 |
| BsaI | GGTCTC | 2 cut(s) | 111, 1571 |
| BsaJI | CCNNGG | 4 cut(s) | 222, 987, 1018, 1385 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1166, 1196 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1589 |
| Bse1I | ACTGG | 5 cut(s) | 195, 663, 720, 735, 1039 |
| Bse3DI | GCAATG | 4 cut(s) | 780, 897, 1908, 2092 |
| BseBI | CCWGG | 2 cut(s) | 1186, 1938 |
| BseDI | CCNNGG | 4 cut(s) | 222, 987, 1018, 1385 |
| BseGI | GGATG | 4 cut(s) | 1167, 1648, 1703, 1723 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1589 |
| BseMI | GCAATG | 4 cut(s) | 780, 897, 1908, 2092 |
| BseMII | CTCAG | 1 cut(s) | 1734 |
| BseNI | ACTGG | 5 cut(s) | 195, 663, 720, 735, 1039 |
| BseRI | GAGGAG | 3 cut(s) | 149, 152, 1784 |
| BseSI | GKGCMC | 1 cut(s) | 1830 |
| BseYI | CCCAGC | 1 cut(s) | 1430 |
| BsgI | GTGCAG | 1 cut(s) | 1083 |
| Bsh1236I | CGCG | 1 cut(s) | 1638 |
| BshFI | GGCC | 2 cut(s) | 719, 1907 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1398, 1525 |
| BsiSI | CCGG | 2 cut(s) | 154, 1694 |
| BslFI | GGGAC | 2 cut(s) | 298, 635 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1589 |
| BsmAI | GTCTC | 4 cut(s) | 111, 827, 1571, 1587 |
| BsmFI | GGGAC | 2 cut(s) | 298, 635 |
| BsnI | GGCC | 2 cut(s) | 719, 1907 |
| Bso31I | GGTCTC | 2 cut(s) | 111, 1571 |
| Bsp1286I | GDGCHC | 5 cut(s) | 571, 1237, 1398, 1525, 1830 |
| Bsp143I | GATC | 6 cut(s) | 144, 853, 862, 937, 970, 1660 |
| Bsp19I | CCATGG | 2 cut(s) | 222, 987 |
| BspACI | CCGC | 6 cut(s) | 30, 201, 538, 596, 822, 2050 |
| BspANI | GGCC | 2 cut(s) | 719, 1907 |
| BspCNI | CTCAG | 1 cut(s) | 1735 |
| BspFNI | CGCG | 1 cut(s) | 1638 |
| BspHI | TCATGA | 1 cut(s) | 946 |
| BspLI | GGNNCC | 5 cut(s) | 158, 296, 972, 1692, 2048 |
| BspMI | ACCTGC | 1 cut(s) | 1313 |
| BspPI | GGATC | 3 cut(s) | 870, 965, 978 |
| BspTNI | GGTCTC | 2 cut(s) | 111, 1571 |
| BsrDI | GCAATG | 4 cut(s) | 780, 897, 1908, 2092 |
| BsrI | ACTGG | 5 cut(s) | 195, 663, 720, 735, 1039 |
| BssECI | CCNNGG | 4 cut(s) | 222, 987, 1018, 1385 |
| BssMI | GATC | 6 cut(s) | 144, 853, 862, 937, 970, 1660 |
| BssT1I | CCWWGG | 4 cut(s) | 222, 987, 1018, 1385 |
| Bst2UI | CCWGG | 2 cut(s) | 1186, 1938 |
| Bst4CI | ACNGT | 2 cut(s) | 1084, 1895 |
| Bst6I | CTCTTC | 2 cut(s) | 862, 1437 |
| BstC8I | GCNNGC | 2 cut(s) | 135, 538 |
| BstDEI | CTNAG | 4 cut(s) | 413, 1743, 1949, 1967 |
| BstDSI | CCRYGG | 2 cut(s) | 222, 987 |
| BstEII | GGTNACC | 1 cut(s) | 982 |
| BstF5I | GGATG | 4 cut(s) | 1167, 1648, 1703, 1723 |
| BstFNI | CGCG | 1 cut(s) | 1638 |
| BstH2I | RGCGCY | 1 cut(s) | 935 |
| BstHHI | GCGC | 3 cut(s) | 934, 1013, 1638 |
| BstKTI | GATC | 6 cut(s) | 147, 856, 865, 940, 973, 1663 |
| BstMAI | GTCTC | 4 cut(s) | 111, 827, 1571, 1587 |
| BstMBI | GATC | 6 cut(s) | 144, 853, 862, 937, 970, 1660 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 11, 575, 887 |
| BstNI | CCWGG | 2 cut(s) | 1186, 1938 |
| BstNSI | RCATGY | 5 cut(s) | 137, 708, 955, 1471, 1758 |
| BstPI | GGTNACC | 1 cut(s) | 982 |
| BstSCI | CCNGG | 4 cut(s) | 152, 1184, 1693, 1936 |
| BstSLI | GKGCMC | 1 cut(s) | 1830 |
| BstUI | CGCG | 1 cut(s) | 1638 |
| BstV2I | GAAGAC | 2 cut(s) | 718, 1171 |
| BstX2I | RGATCY | 1 cut(s) | 970 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 223 |
| BstYI | RGATCY | 1 cut(s) | 970 |
| BsuI | GTATCC | 1 cut(s) | 1894 |
| BsuRI | GGCC | 2 cut(s) | 719, 1907 |
| BtgI | CCRYGG | 2 cut(s) | 222, 987 |
| BtgZI | GCGATG | 1 cut(s) | 1279 |
| BtsCI | GGATG | 4 cut(s) | 1167, 1648, 1703, 1723 |
| BtsIMutI | CAGTG | 2 cut(s) | 1080, 1900 |
| BveI | ACCTGC | 1 cut(s) | 1313 |
| Cac8I | GCNNGC | 2 cut(s) | 135, 538 |
| CciI | TCATGA | 1 cut(s) | 946 |
| CfoI | GCGC | 3 cut(s) | 934, 1013, 1638 |
| Csp6I | GTAC | 1 cut(s) | 1977 |
| CviQI | GTAC | 1 cut(s) | 1977 |
| DdeI | CTNAG | 4 cut(s) | 413, 1743, 1949, 1967 |
| DpnI | GATC | 6 cut(s) | 146, 855, 864, 939, 972, 1662 |
| DpnII | GATC | 6 cut(s) | 144, 853, 862, 937, 970, 1660 |
| DraI | TTTAAA | 1 cut(s) | 340 |
| DraIII | CACNNNGTG | 1 cut(s) | 454 |
| EaeI | YGGCCR | 2 cut(s) | 717, 1905 |
| Eam1104I | CTCTTC | 2 cut(s) | 862, 1437 |
| EarI | CTCTTC | 2 cut(s) | 862, 1437 |
| Eco130I | CCWWGG | 4 cut(s) | 222, 987, 1018, 1385 |
| Eco24I | GRGCYC | 2 cut(s) | 571, 1237 |
| Eco31I | GGTCTC | 2 cut(s) | 111, 1571 |
| Eco32I | GATATC | 1 cut(s) | 2007 |
| Eco57I | CTGAAG | 2 cut(s) | 1094, 1863 |
| Eco91I | GGTNACC | 1 cut(s) | 982 |
| EcoO65I | GGTNACC | 1 cut(s) | 982 |
| EcoRI | GAATTC | 2 cut(s) | 374, 583 |
| EcoRII | CCWGG | 2 cut(s) | 1184, 1936 |
| EcoRV | GATATC | 1 cut(s) | 2007 |
| EcoT14I | CCWWGG | 4 cut(s) | 222, 987, 1018, 1385 |
| EcoT38I | GRGCYC | 2 cut(s) | 571, 1237 |
| ErhI | CCWWGG | 4 cut(s) | 222, 987, 1018, 1385 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 315, 347, 1221, 1253 |
| FaqI | GGGAC | 2 cut(s) | 298, 635 |
| FauI | CCCGC | 3 cut(s) | 37, 545, 589 |
| FauNDI | CATATG | 1 cut(s) | 504 |
| FbaI | TGATCA | 1 cut(s) | 144 |
| Fnu4HI | GCNGC | 1 cut(s) | 201 |
| FokI | GGATG | 4 cut(s) | 1174, 1655, 1710, 1730 |
| FriOI | GRGCYC | 2 cut(s) | 571, 1237 |
| Fsp4HI | GCNGC | 1 cut(s) | 201 |
| FspBI | CTAG | 4 cut(s) | 387, 690, 1212, 1850 |
| GlaI | GCGC | 3 cut(s) | 933, 1012, 1637 |
| GluI | GCNGC | 1 cut(s) | 201 |
| GsaI | CCCAGC | 1 cut(s) | 1434 |
| HaeII | RGCGCY | 1 cut(s) | 935 |
| HaeIII | GGCC | 2 cut(s) | 719, 1907 |
| HapII | CCGG | 2 cut(s) | 154, 1694 |
| HhaI | GCGC | 3 cut(s) | 934, 1013, 1638 |
| Hin6I | GCGC | 3 cut(s) | 932, 1011, 1636 |
| HinP1I | GCGC | 3 cut(s) | 932, 1011, 1636 |
| HindIII | AAGCTT | 1 cut(s) | 1875 |
| HinfI | GANTC | 6 cut(s) | 194, 439, 499, 768, 846, 1550 |
| HpaII | CCGG | 2 cut(s) | 154, 1694 |
| HphI | GGTGA | 4 cut(s) | 169, 643, 758, 1556 |
| Hpy166II | GTNNAC | 2 cut(s) | 1760, 1777 |
| Hpy188I | TCNGA | 2 cut(s) | 1376, 1928 |
| Hpy188III | TCNNGA | 5 cut(s) | 320, 947, 1238, 1462, 1790 |
| Hpy8I | GTNNAC | 2 cut(s) | 1760, 1777 |
| Hpy99I | CGWCG | 1 cut(s) | 260 |
| HpyAV | CCTTC | 7 cut(s) | 391, 422, 1057, 1176, 1681, 1864, 2063 |
| HpyCH4III | ACNGT | 2 cut(s) | 1084, 1895 |
| HpyCH4IV | ACGT | 1 cut(s) | 1176 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 11, 575, 887 |
| HpyF3I | CTNAG | 4 cut(s) | 413, 1743, 1949, 1967 |
| HpySE526I | ACGT | 1 cut(s) | 1176 |
| HspAI | GCGC | 3 cut(s) | 932, 1011, 1636 |
| Ksp22I | TGATCA | 1 cut(s) | 144 |
| Kzo9I | GATC | 6 cut(s) | 144, 853, 862, 937, 970, 1660 |
| LmnI | GCTCC | 4 cut(s) | 162, 294, 1022, 1696 |
| LweI | GCATC | 7 cut(s) | 911, 1152, 1245, 1631, 1633, 1831, 1843 |
| MaeI | CTAG | 4 cut(s) | 387, 690, 1212, 1850 |
| MaeII | ACGT | 1 cut(s) | 1176 |
| MaeIII | GTNAC | 7 cut(s) | 599, 679, 746, 776, 790, 982, 1285 |
| MalI | GATC | 6 cut(s) | 146, 855, 864, 939, 972, 1662 |
| MboI | GATC | 6 cut(s) | 144, 853, 862, 937, 970, 1660 |
| MboII | GAAGA | 9 cut(s) | 619, 723, 879, 1171, 1276, 1454, 1559, 1871, 1874 |
| MfeI | CAATTG | 2 cut(s) | 1143, 1250 |
| MflI | RGATCY | 1 cut(s) | 970 |
| MhlI | GDGCHC | 5 cut(s) | 571, 1237, 1398, 1525, 1830 |
| MlsI | TGGCCA | 2 cut(s) | 719, 1907 |
| MluNI | TGGCCA | 2 cut(s) | 719, 1907 |
| MlyI | GAGTC | 1 cut(s) | 762 |
| MmeI | TCCRAC | 3 cut(s) | 121, 1501, 1695 |
| Mox20I | TGGCCA | 2 cut(s) | 719, 1907 |
| MroXI | GAANNNNTTC | 5 cut(s) | 327, 438, 638, 1245, 2051 |
| MscI | TGGCCA | 2 cut(s) | 719, 1907 |
| MseI | TTAA | 9 cut(s) | 41, 339, 1086, 1155, 1332, 1365, 1556, 1809, 2019 |
| MslI | CAYNNNNRTG | 3 cut(s) | 507, 1530, 1893 |
| Msp20I | TGGCCA | 2 cut(s) | 719, 1907 |
| MspI | CCGG | 2 cut(s) | 154, 1694 |
| MspR9I | CCNGG | 4 cut(s) | 154, 1186, 1695, 1938 |
| MunI | CAATTG | 2 cut(s) | 1143, 1250 |
| MvaI | CCWGG | 2 cut(s) | 1186, 1938 |
| MvnI | CGCG | 1 cut(s) | 1638 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 11, 575, 887 |
| NciI | CCSGG | 2 cut(s) | 154, 1695 |
| NcoI | CCATGG | 2 cut(s) | 222, 987 |
| NdeI | CATATG | 1 cut(s) | 504 |
| NdeII | GATC | 6 cut(s) | 144, 853, 862, 937, 970, 1660 |
| NlaIV | GGNNCC | 5 cut(s) | 158, 296, 972, 1692, 2048 |
| NmeAIII | GCCGAG | 1 cut(s) | 338 |
| NmuCI | GTSAC | 3 cut(s) | 746, 790, 1285 |
| NspI | RCATGY | 5 cut(s) | 137, 708, 955, 1471, 1758 |
| OliI | CACNNNNGTG | 1 cut(s) | 1893 |
| PaeI | GCATGC | 1 cut(s) | 137 |
| PagI | TCATGA | 1 cut(s) | 946 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 261, 862 |
| PdmI | GAANNNNTTC | 5 cut(s) | 327, 438, 638, 1245, 2051 |
| PfeI | GAWTC | 5 cut(s) | 194, 439, 499, 846, 1550 |
| PfoI | TCCNGGA | 3 cut(s) | 1184, 1693, 1936 |
| PkrI | GCNGC | 1 cut(s) | 202 |
| PleI | GAGTC | 1 cut(s) | 762 |
| PpsI | GAGTC | 1 cut(s) | 762 |
| PsiI | TTATAA | 1 cut(s) | 279 |
| Psp6I | CCWGG | 2 cut(s) | 1184, 1936 |
| PspEI | GGTNACC | 1 cut(s) | 982 |
| PspFI | CCCAGC | 1 cut(s) | 1430 |
| PspGI | CCWGG | 2 cut(s) | 1184, 1936 |
| PspN4I | GGNNCC | 5 cut(s) | 158, 296, 972, 1692, 2048 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1123, 1155 |
| PsuI | RGATCY | 1 cut(s) | 970 |
| RsaI | GTAC | 1 cut(s) | 1978 |
| RsaNI | GTAC | 1 cut(s) | 1977 |
| RseI | CAYNNNNRTG | 3 cut(s) | 507, 1530, 1893 |
| SaqAI | TTAA | 9 cut(s) | 41, 339, 1086, 1155, 1332, 1365, 1556, 1809, 2019 |
| SatI | GCNGC | 1 cut(s) | 201 |
| Sau3AI | GATC | 6 cut(s) | 144, 853, 862, 937, 970, 1660 |
| SchI | GAGTC | 1 cut(s) | 762 |
| ScrFI | CCNGG | 4 cut(s) | 154, 1186, 1695, 1938 |
| SduI | GDGCHC | 5 cut(s) | 571, 1237, 1398, 1525, 1830 |
| SfaNI | GCATC | 7 cut(s) | 911, 1152, 1245, 1631, 1633, 1831, 1843 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 507, 1530, 1893 |
| SmlI | CTYRAG | 2 cut(s) | 527, 770 |
| SmoI | CTYRAG | 2 cut(s) | 527, 770 |
| SpeI | ACTAGT | 1 cut(s) | 689 |
| SphI | GCATGC | 1 cut(s) | 137 |
| SsiI | CCGC | 6 cut(s) | 30, 201, 538, 596, 822, 2050 |
| SspI | AATATT | 1 cut(s) | 1615 |
| SspMI | CTAG | 4 cut(s) | 387, 690, 1212, 1850 |
| StyD4I | CCNGG | 4 cut(s) | 152, 1184, 1693, 1936 |
| StyI | CCWWGG | 4 cut(s) | 222, 987, 1018, 1385 |
| TaaI | ACNGT | 2 cut(s) | 1084, 1895 |
| TaiI | ACGT | 1 cut(s) | 1179 |
| TaqI | TCGA | 6 cut(s) | 255, 587, 856, 865, 1342, 1426 |
| TauI | GCSGC | 1 cut(s) | 203 |
| TfiI | GAWTC | 5 cut(s) | 194, 439, 499, 846, 1550 |
| Tru1I | TTAA | 9 cut(s) | 41, 339, 1086, 1155, 1332, 1365, 1556, 1809, 2019 |
| Tru9I | TTAA | 9 cut(s) | 41, 339, 1086, 1155, 1332, 1365, 1556, 1809, 2019 |
| TscAI | CASTG | 2 cut(s) | 1087, 1900 |
| TseFI | GTSAC | 3 cut(s) | 746, 790, 1285 |
| Tsp45I | GTSAC | 3 cut(s) | 746, 790, 1285 |
| TspGWI | ACGGA | 2 cut(s) | 1819, 1994 |
| TspRI | CASTG | 2 cut(s) | 1087, 1900 |
| XapI | RAATTY | 2 cut(s) | 374, 583 |
| XceI | RCATGY | 5 cut(s) | 137, 708, 955, 1471, 1758 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 727 |
| XmnI | GAANNNNTTC | 5 cut(s) | 327, 438, 638, 1245, 2051 |
| XspI | CTAG | 4 cut(s) | 387, 690, 1212, 1850 |