Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006765

Physical Location & Seq

Genomic Coordinates Reverse (-)

29113134 .. 29115258

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1202700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAAGGGTGGTTGCAAATGGTTCTCTTATCCACATTCCCTCCAAACCAATGAAAAACAAAAATTGCAACCTAAACTCCTACAATTGAATTTGGCAGAGCTGCTCAACTCATTGGAGACAATGGCAAAAGCTATCATGGGATTCACCATTACCACTCCACACATTCATAGCTCTTCTCTCCAAACAACAAAGTTGGACATCAGCAGCTCATCTACCAGATTGCTTAGGCAGTCTTCAAGCTCTGAACCATTCAGCGGCTGCAAGCAGGTTGAATTAGGGAAAAAGAGCAAAAGAACCTCTTTCTGCAGAACAAATGCTTTCCCTGATTGGCCTTTGATGGCAGTTCTAGTAGAGCACATAGAAGGCCAGAGAGACCTCATAACCCACAAATCCATTGTGCATCTCAGTGATGAAAACATAAAGAATGTCTATACCTTTTACATCATGTTCACTTGTTGGGGATGCTTGTTCTTTGGTTCCATGAAGGATCCGTACTACGATTCAGAGACGTATAGAGGAGATGGAGGTGATGGCACTGGGTTCTGGATTTATGAGAAGCAAGAAGACATAGAAGAATCAGCAAGAGCAGAATTGTGGAGGGAGGAGCTGATTGAGGAGATAGAACAGAAGGTTGGAAGTCTAAGAGAGTTGGAAGAGGCTGGAAAGAAGGAGGAGCTTGTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

26.13

Weight (kDa)

5.76

Isoelectric Point (pI)

63.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18730 AT1G18730 AT1G18730 AT1G18730 AT1G18730
fragaria_vesca	FvH4_5g14690 FvH4_5g14690 FvH4_5g14690 FvH4_5g14690 FvH4_5g14690
malus_domestica	MD06G1195600.v1.1 MD14G1202700.v1.1
prunus_persica	Prupe.5G195500_v2.0.a1
pyrus_communis	pycom06g17290 pycom14g16760 pycom14g16780
rosa_chinensis	RchiOBHm_Chr7g0181701
rosa_laevigata	RLG00000005175
rosa_multiflora	Rmu_sc0000988.1_g000010
rosa_roxburghii	Rroxscaffold_3G00271790
rosa_rugosa	Rorug06G0442900
rosa_samantha	Rh7AG045400 Rh7BG044600 Rh7CG046100 Rh7DG045000
rosa_wichuraiana	Rw7G003780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	2 cut(s)	482, 495
AcsI	RAATTY	1 cut(s)	88
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	88, 237, 272
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AluBI	AGCT	7 cut(s)	100, 131, 171, 207, 240, 607, 676
AluI	AGCT	7 cut(s)	100, 131, 171, 207, 240, 607, 676
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	3 cut(s)	110, 366, 500
AlwI	GGATC	2 cut(s)	482, 495
AlwNI	CAGNNNCTG	1 cut(s)	258
AoxI	GGCC	2 cut(s)	329, 364
ApeKI	GCWGC	3 cut(s)	100, 204, 258
ApoI	RAATTY	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	136, 539
BamHI	GGATCC	1 cut(s)	487
BarI	GAAGNNNNNNTAC	2 cut(s)	476, 508
BbsI	GAAGAC	2 cut(s)	225, 570
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	3 cut(s)	87, 216, 245
BccI	CCATC	3 cut(s)	331, 515, 524
BcoDI	GTCTC	3 cut(s)	110, 366, 500
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	304
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	4 cut(s)	101, 205, 256, 259
BlsI	GCNGC	4 cut(s)	102, 206, 257, 260
BmiI	GGNNCC	2 cut(s)	478, 489
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	2 cut(s)	409, 452
BmuI	ACTGGG	1 cut(s)	546
BpiI	GAAGAC	2 cut(s)	225, 570
Bpu10I	CCTNAGC	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	366
BsaXI	ACNNNNNCTCC	4 cut(s)	24, 54, 60, 90
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	541
BseGI	GGATG	1 cut(s)	467
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	418
BseNI	ACTGG	1 cut(s)	541
BseRI	GAGGAG	4 cut(s)	531, 617, 629, 686
BseXI	GCAGC	3 cut(s)	87, 216, 245
BshFI	GGCC	2 cut(s)	331, 366
BsiHKAI	GWGCWC	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	3 cut(s)	110, 366, 500
BsmBI	CGTCTC	1 cut(s)	500
BsnI	GGCC	2 cut(s)	331, 366
Bso31I	GGTCTC	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	487
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	2 cut(s)	331, 366
BspCNI	CTCAG	1 cut(s)	417
BspLI	GGNNCC	2 cut(s)	478, 489
BspMAI	CTGCAG	1 cut(s)	308
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	2 cut(s)	482, 495
BspQI	GCTCTTC	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	541
BssMI	GATC	1 cut(s)	487
Bst6I	CTCTTC	2 cut(s)	178, 648
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	3 cut(s)	224, 404, 641
BstF5I	GGATG	1 cut(s)	467
BstKTI	GATC	1 cut(s)	490
BstMAI	GTCTC	3 cut(s)	110, 366, 500
BstMBI	GATC	1 cut(s)	487
BstSFI	CTRYAG	1 cut(s)	304
BstV1I	GCAGC	3 cut(s)	87, 216, 245
BstV2I	GAAGAC	2 cut(s)	225, 570
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BsuRI	GGCC	2 cut(s)	331, 366
BtsCI	GGATG	1 cut(s)	467
BtsIMutI	CAGTG	2 cut(s)	412, 534
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	263
CaiI	CAGNNNCTG	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	3 cut(s)	136, 445, 481
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	3 cut(s)	224, 404, 641
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
Eam1104I	CTCTTC	2 cut(s)	178, 648
EarI	CTCTTC	2 cut(s)	178, 648
Eco31I	GGTCTC	1 cut(s)	366
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	3 cut(s)	139, 448, 484
FalI	AAGNNNNNCTT	2 cut(s)	283, 315
FatI	CATG	3 cut(s)	135, 444, 480
Fnu4HI	GCNGC	4 cut(s)	101, 205, 256, 259
FokI	GGATG	1 cut(s)	474
Fsp4HI	GCNGC	4 cut(s)	101, 205, 256, 259
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	4 cut(s)	101, 205, 256, 259
HaeIII	GGCC	2 cut(s)	331, 366
Hin1II	CATG	3 cut(s)	139, 448, 484
HinfI	GANTC	3 cut(s)	141, 500, 575
HphI	GGTGA	2 cut(s)	136, 539
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188I	TCNGA	2 cut(s)	244, 505
Hpy188III	TCNNGA	1 cut(s)	544
Hpy8I	GTNNAC	1 cut(s)	450
HpyAV	CCTTC	4 cut(s)	356, 478, 622, 661
HpyCH4IV	ACGT	1 cut(s)	509
HpyCH4V	TGCA	5 cut(s)	15, 67, 261, 306, 400
HpyF3I	CTNAG	3 cut(s)	224, 404, 641
HpySE526I	ACGT	1 cut(s)	509
Hsp92II	CATG	3 cut(s)	139, 448, 484
Kzo9I	GATC	1 cut(s)	487
LguI	GCTCTTC	1 cut(s)	178
LmnI	GCTCC	2 cut(s)	604, 673
LpnPI	CCDG	7 cut(s)	229, 251, 336, 380, 522, 529, 645
Lsp1109I	GCAGC	3 cut(s)	87, 216, 245
LweI	GCATC	2 cut(s)	409, 452
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	509
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MboII	GAAGA	5 cut(s)	165, 225, 575, 584, 665
MfeI	CAATTG	1 cut(s)	83
MflI	RGATCY	1 cut(s)	487
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	5 cut(s)	62, 83, 88, 272, 590
MmeI	TCCRAC	3 cut(s)	174, 613, 630
MslI	CAYNNNNRTG	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	255
MunI	CAATTG	1 cut(s)	83
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	3 cut(s)	139, 448, 484
NlaIV	GGNNCC	2 cut(s)	478, 489
PciSI	GCTCTTC	1 cut(s)	178
PfeI	GAWTC	3 cut(s)	141, 500, 575
PkrI	GCNGC	4 cut(s)	102, 206, 257, 260
PspN4I	GGNNCC	2 cut(s)	478, 489
PstI	CTGCAG	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	487
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	405
SapI	GCTCTTC	1 cut(s)	178
SatI	GCNGC	4 cut(s)	101, 205, 256, 259
Sau3AI	GATC	1 cut(s)	487
SduI	GDGCHC	1 cut(s)	357
SfaNI	GCATC	2 cut(s)	409, 452
SfcI	CTRYAG	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	405
Sse9I	AATT	5 cut(s)	62, 83, 88, 272, 590
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	1 cut(s)	347
TaiI	ACGT	1 cut(s)	512
TasI	AATT	5 cut(s)	62, 83, 88, 272, 590
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	3 cut(s)	141, 500, 575
TscAI	CASTG	2 cut(s)	412, 541
TseI	GCWGC	3 cut(s)	100, 204, 258
TspDTI	ATGAA	5 cut(s)	17, 66, 155, 426, 497
TspGWI	ACGGA	1 cut(s)	480
TspRI	CASTG	2 cut(s)	412, 541
XapI	RAATTY	1 cut(s)	88
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.