Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006765

Physical Location & Seq

Genomic Coordinates Forward (+)

64131361 .. 64132978

Gene Structure 1618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCAGATGCTATCATGGGCTTTACCATTACTAGTCCACATATTCACAGCTCTTCTCTCCATACAACAAAAGTGGACATCACTCACATGACCTCATCTACAAGACTGCTTAGGCAGTGTTCAAGCTCTGAACTTTTCGGTGGGTGCAAGCAGCTTGAAGTTGGGAAAAAAAGCAAAAGAGCCCCTTTGAGCAGAACCAATGCTTTCCCAGATTGGCCTCTGATGGCAGTTTTAGTGGAGCATATTGAAGGCCAAAGAGACTTTATATCTCACAAGTCCATTGTGCATCTCAGTGATGACTCCATAAAAAGTGTCTATACTGCTTACATCATGTTCACTGTTTGGGGGTGTTTATTCTTTGGATCCATGAAGGATCCATATTATGATTCAGAGCAGTACAGGAAAGATGGAGGAGATGGTACTGGACATTGGATATATGAGAAGCAAGAAGACATTGAAGAATCTGCAAGATCAGAGTTGTGGAGGGAGGAGCTGATTGAGGAGATAGAGCAGAAAGTTGGAGGGCTGAGAGAGTTGGAAGAGGCTGCTAAGAAGGAGGAGCAGCTTGTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

21.81

Weight (kDa)

5.5

Isoelectric Point (pI)

62.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18730 AT1G18730 AT1G18730 AT1G18730 AT1G18730
fragaria_vesca	FvH4_5g14690 FvH4_5g14690 FvH4_5g14690 FvH4_5g14690 FvH4_5g14690
malus_domestica	MD06G1195600.v1.1 MD14G1202700.v1.1
prunus_persica	Prupe.5G195500_v2.0.a1
pyrus_communis	pycom06g17290 pycom14g16760 pycom14g16780
rosa_chinensis	RchiOBHm_Chr7g0181701
rosa_laevigata	RLG00000005175
rosa_multiflora	Rmu_sc0000988.1_g000010
rosa_roxburghii	Rroxscaffold_3G00271790
rosa_rugosa	Rorug06G0442900
rosa_samantha	Rh7AG045400 Rh7BG044600 Rh7CG046100 Rh7DG045000
rosa_wichuraiana	Rw7G003780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	357, 368, 370, 381
AfaI	GTAC	2 cut(s)	398, 421
AgsI	TTSAA	4 cut(s)	123, 158, 248, 458
AhlI	ACTAGT	1 cut(s)	32
AluBI	AGCT	5 cut(s)	51, 126, 154, 493, 565
AluI	AGCT	5 cut(s)	51, 126, 154, 493, 565
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	4 cut(s)	357, 368, 370, 381
AoxI	GGCC	2 cut(s)	215, 250
ApeKI	GCWGC	3 cut(s)	151, 545, 562
BamHI	GGATCC	2 cut(s)	362, 373
BanII	GRGCYC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	456
BbvI	GCAGC	2 cut(s)	163, 532
BccI	CCATC	3 cut(s)	217, 401, 410
BcoDI	GTCTC	1 cut(s)	252
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	1 cut(s)	33
BisI	GCNGC	3 cut(s)	152, 546, 563
BlsI	GCNGC	3 cut(s)	153, 547, 564
BmiI	GGNNCC	2 cut(s)	364, 375
BmsI	GCATC	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	456
Bpu10I	CCTNAGC	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	427
BseMII	CTCAG	2 cut(s)	304, 518
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	4 cut(s)	426, 503, 515, 572
BseXI	GCAGC	2 cut(s)	163, 532
BshFI	GGCC	2 cut(s)	217, 252
BsmAI	GTCTC	1 cut(s)	252
BsnI	GGCC	2 cut(s)	217, 252
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	362, 373, 470
BspANI	GGCC	2 cut(s)	217, 252
BspCNI	CTCAG	2 cut(s)	303, 519
BspLI	GGNNCC	2 cut(s)	364, 375
BspPI	GGATC	4 cut(s)	357, 368, 370, 381
BspQI	GCTCTTC	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	427
BssMI	GATC	3 cut(s)	362, 373, 470
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	2 cut(s)	58, 534
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	4 cut(s)	110, 290, 527, 549
BstKTI	GATC	3 cut(s)	365, 376, 473
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	3 cut(s)	362, 373, 470
BstV1I	GCAGC	2 cut(s)	163, 532
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	2 cut(s)	362, 373
BstYI	RGATCY	2 cut(s)	362, 373
BsuRI	GGCC	2 cut(s)	217, 252
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	3 cut(s)	122, 298, 336
Cac8I	GCNNGC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	397, 420
CspCI	CAANNNNNGTGG	2 cut(s)	54, 89
CviAII	CATG	4 cut(s)	16, 88, 331, 367
CviQI	GTAC	2 cut(s)	397, 420
DdeI	CTNAG	4 cut(s)	110, 290, 527, 549
DpnI	GATC	3 cut(s)	364, 375, 472
DpnII	GATC	3 cut(s)	362, 373, 470
Eam1104I	CTCTTC	2 cut(s)	58, 534
EarI	CTCTTC	2 cut(s)	58, 534
Eco24I	GRGCYC	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	184
FaeI	CATG	4 cut(s)	19, 91, 334, 370
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FatI	CATG	4 cut(s)	15, 87, 330, 366
Fnu4HI	GCNGC	3 cut(s)	152, 546, 563
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	3 cut(s)	152, 546, 563
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	3 cut(s)	152, 546, 563
HaeIII	GGCC	2 cut(s)	217, 252
Hin1II	CATG	4 cut(s)	19, 91, 334, 370
HinfI	GANTC	3 cut(s)	299, 386, 461
Hpy166II	GTNNAC	3 cut(s)	38, 76, 336
Hpy188I	TCNGA	4 cut(s)	130, 222, 391, 475
Hpy8I	GTNNAC	3 cut(s)	38, 76, 336
HpyAV	CCTTC	3 cut(s)	242, 364, 547
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	3 cut(s)	147, 286, 467
HpyF3I	CTNAG	4 cut(s)	110, 290, 527, 549
Hsp92II	CATG	4 cut(s)	19, 91, 334, 370
Kzo9I	GATC	3 cut(s)	362, 373, 470
LguI	GCTCTTC	1 cut(s)	58
LmnI	GCTCC	3 cut(s)	238, 490, 559
LpnPI	CCDG	3 cut(s)	222, 385, 408
Lsp1109I	GCAGC	2 cut(s)	163, 532
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	33
MalI	GATC	3 cut(s)	364, 375, 472
MboI	GATC	3 cut(s)	362, 373, 470
MboII	GAAGA	4 cut(s)	45, 461, 470, 551
MflI	RGATCY	2 cut(s)	362, 373
MhlI	GDGCHC	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	2 cut(s)	499, 516
MnlI	CCTC	9 cut(s)	103, 228, 404, 477, 481, 493, 515, 535, 550
MslI	CAYNNNNRTG	2 cut(s)	86, 291
NdeII	GATC	3 cut(s)	362, 373, 470
NlaIII	CATG	4 cut(s)	19, 91, 334, 370
NlaIV	GGNNCC	2 cut(s)	364, 375
PciSI	GCTCTTC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	386, 461
PkrI	GCNGC	3 cut(s)	153, 547, 564
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	364, 375
PsuI	RGATCY	2 cut(s)	362, 373
RsaI	GTAC	2 cut(s)	398, 421
RsaNI	GTAC	2 cut(s)	397, 420
RseI	CAYNNNNRTG	2 cut(s)	86, 291
SapI	GCTCTTC	1 cut(s)	58
SatI	GCNGC	3 cut(s)	152, 546, 563
Sau3AI	GATC	3 cut(s)	362, 373, 470
SchI	GAGTC	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	6 cut(s)	53, 95, 128, 156, 495, 567
SfaNI	GCATC	1 cut(s)	295
SmiMI	CAYNNNNRTG	2 cut(s)	86, 291
SpeI	ACTAGT	1 cut(s)	32
SspMI	CTAG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	340
TatI	WGTACW	1 cut(s)	396
TfiI	GAWTC	2 cut(s)	386, 461
TscAI	CASTG	3 cut(s)	122, 298, 343
TseI	GCWGC	3 cut(s)	151, 545, 562
TspDTI	ATGAA	1 cut(s)	383
TspRI	CASTG	3 cut(s)	122, 298, 343
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.