Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006765

Physical Location & Seq

Genomic Coordinates Reverse (-)

3095657 .. 3096999

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG046100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGCTTCACCATTACTAGTCCACATATTCACAGTTCTTCTCTCCAAACAACAAAAGCGGACATCAGCCACATGAGCTCATCAACAAGATTGCTTAGGCAGTTTTCAAGCTCTGAACTTTTCGGTGGGTGCAAGCAGCTCGAGGTTGGGAAAAAAAGCAAAAGAGCCCCTTTGAGCAGAACCAGTGCTTTCCCAGATTGGCCTCTGATGGCAGTTTTAGTGGAGCATATTGAAGGCCAGAGAGACTTTATATCCCACAAGTCCATTGTCCATCTCAGTGATGACTCCATAAAAAGTGTCTATACTGCTTACATCATGTTCACTGTTTGGGGGTGTTTATTCTTTGGATCCATGAAGGATCCATATTATGATTCAGAGCAGTACAGGAAAGATGGAGGAGATGGTACTGGACATTGGATATATGAGAAGCAAGAAGACATTGAAGAATCTGCAAGATCAGAATTGTGGAGGGAGGAGCTGATTGAGGAGATAGAGCAGAAAGTTGGAGGGCTGAGAGAGTTGGAAGAGGCTGCTAAGAAGGAGGAGCAGCTTGTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

21.26

Weight (kDa)

5.53

Isoelectric Point (pI)

70.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18730 AT1G18730 AT1G18730 AT1G18730 AT1G18730
fragaria_vesca	FvH4_5g14690 FvH4_5g14690 FvH4_5g14690 FvH4_5g14690 FvH4_5g14690
malus_domestica	MD06G1195600.v1.1 MD14G1202700.v1.1
prunus_persica	Prupe.5G195500_v2.0.a1
pyrus_communis	pycom06g17290 pycom14g16760 pycom14g16780
rosa_chinensis	RchiOBHm_Chr7g0181701
rosa_laevigata	RLG00000005175
rosa_multiflora	Rmu_sc0000988.1_g000010
rosa_roxburghii	Rroxscaffold_3G00271790
rosa_rugosa	Rorug06G0442900
rosa_samantha	Rh7AG045400 Rh7BG044600 Rh7CG046100 Rh7DG045000
rosa_wichuraiana	Rw7G003780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	4 cut(s)	342, 353, 355, 366
AfaI	GTAC	2 cut(s)	383, 406
AgsI	TTSAA	3 cut(s)	108, 233, 443
AhlI	ACTAGT	1 cut(s)	17
AluBI	AGCT	5 cut(s)	78, 111, 139, 478, 550
AluI	AGCT	5 cut(s)	78, 111, 139, 478, 550
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	4 cut(s)	342, 353, 355, 366
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	2 cut(s)	200, 235
ApeKI	GCWGC	3 cut(s)	136, 530, 547
AvaI	CYCGRG	1 cut(s)	140
BamHI	GGATCC	2 cut(s)	347, 358
BanII	GRGCYC	2 cut(s)	80, 169
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	148, 517
BccI	CCATC	4 cut(s)	202, 279, 386, 395
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BcoDI	GTCTC	1 cut(s)	237
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	1 cut(s)	18
BisI	GCNGC	3 cut(s)	137, 531, 548
BlsI	GCNGC	3 cut(s)	138, 532, 549
BmeT110I	CYCGRG	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	349, 360
BpiI	GAAGAC	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	183, 412
BseMII	CTCAG	2 cut(s)	289, 503
BseNI	ACTGG	2 cut(s)	183, 412
BseRI	GAGGAG	4 cut(s)	411, 488, 500, 557
BseXI	GCAGC	2 cut(s)	148, 517
BshFI	GGCC	2 cut(s)	202, 237
BsiHKAI	GWGCWC	1 cut(s)	80
BsiHKCI	CYCGRG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	202, 237
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	80, 169
Bsp143I	GATC	3 cut(s)	347, 358, 455
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	2 cut(s)	202, 237
BspCNI	CTCAG	2 cut(s)	288, 504
BspLI	GGNNCC	2 cut(s)	349, 360
BspPI	GGATC	4 cut(s)	342, 353, 355, 366
BsrI	ACTGG	2 cut(s)	183, 412
BssMI	GATC	3 cut(s)	347, 358, 455
Bst4CI	ACNGT	2 cut(s)	35, 325
Bst6I	CTCTTC	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	4 cut(s)	95, 275, 512, 534
BstKTI	GATC	3 cut(s)	350, 361, 458
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	3 cut(s)	347, 358, 455
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	148, 517
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	2 cut(s)	347, 358
BstYI	RGATCY	2 cut(s)	347, 358
BsuRI	GGCC	2 cut(s)	202, 237
BtsIMutI	CAGTG	3 cut(s)	190, 283, 321
Cac8I	GCNNGC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	382, 405
CviAII	CATG	3 cut(s)	73, 316, 352
CviQI	GTAC	2 cut(s)	382, 405
DdeI	CTNAG	4 cut(s)	95, 275, 512, 534
DpnI	GATC	3 cut(s)	349, 360, 457
DpnII	GATC	3 cut(s)	347, 358, 455
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Ecl136II	GAGCTC	1 cut(s)	78
Eco24I	GRGCYC	2 cut(s)	80, 169
Eco53kI	GAGCTC	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	78
EcoT38I	GRGCYC	2 cut(s)	80, 169
FaeI	CATG	3 cut(s)	76, 319, 355
FalI	AAGNNNNNCTT	2 cut(s)	154, 186
FatI	CATG	3 cut(s)	72, 315, 351
Fnu4HI	GCNGC	3 cut(s)	137, 531, 548
FriOI	GRGCYC	2 cut(s)	80, 169
Fsp4HI	GCNGC	3 cut(s)	137, 531, 548
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	3 cut(s)	137, 531, 548
HaeIII	GGCC	2 cut(s)	202, 237
Hin1II	CATG	3 cut(s)	76, 319, 355
HinfI	GANTC	3 cut(s)	284, 371, 446
Hpy166II	GTNNAC	2 cut(s)	23, 321
Hpy188I	TCNGA	4 cut(s)	115, 207, 376, 460
Hpy8I	GTNNAC	2 cut(s)	23, 321
HpyAV	CCTTC	3 cut(s)	227, 349, 532
HpyCH4III	ACNGT	2 cut(s)	35, 325
HpyCH4V	TGCA	2 cut(s)	132, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	4 cut(s)	95, 275, 512, 534
Hsp92II	CATG	3 cut(s)	76, 319, 355
Kzo9I	GATC	3 cut(s)	347, 358, 455
LmnI	GCTCC	3 cut(s)	223, 475, 544
LpnPI	CCDG	5 cut(s)	196, 207, 251, 370, 393
Lsp1109I	GCAGC	2 cut(s)	148, 517
MaeI	CTAG	1 cut(s)	18
MalI	GATC	3 cut(s)	349, 360, 457
MboI	GATC	3 cut(s)	347, 358, 455
MboII	GAAGA	4 cut(s)	30, 446, 455, 536
MflI	RGATCY	2 cut(s)	347, 358
MhlI	GDGCHC	2 cut(s)	80, 169
MluCI	AATT	1 cut(s)	461
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	2 cut(s)	484, 501
MnlI	CCTC	9 cut(s)	136, 213, 389, 462, 466, 478, 500, 520, 535
MslI	CAYNNNNRTG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	75
NdeII	GATC	3 cut(s)	347, 358, 455
NlaIII	CATG	3 cut(s)	76, 319, 355
NlaIV	GGNNCC	2 cut(s)	349, 360
PaeR7I	CTCGAG	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	371, 446
PkrI	GCNGC	3 cut(s)	138, 532, 549
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
Psp124BI	GAGCTC	1 cut(s)	80
PspN4I	GGNNCC	2 cut(s)	349, 360
PspXI	VCTCGAGB	1 cut(s)	140
PsuI	RGATCY	2 cut(s)	347, 358
RsaI	GTAC	2 cut(s)	383, 406
RsaNI	GTAC	2 cut(s)	382, 405
RseI	CAYNNNNRTG	1 cut(s)	276
SacI	GAGCTC	1 cut(s)	80
SatI	GCNGC	3 cut(s)	137, 531, 548
Sau3AI	GATC	3 cut(s)	347, 358, 455
SchI	GAGTC	1 cut(s)	278
SduI	GDGCHC	2 cut(s)	80, 169
SetI	ASST	6 cut(s)	80, 113, 141, 147, 480, 552
Sfr274I	CTCGAG	1 cut(s)	140
SlaI	CTCGAG	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
SpeI	ACTAGT	1 cut(s)	17
Sse9I	AATT	1 cut(s)	461
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	1 cut(s)	18
SstI	GAGCTC	1 cut(s)	80
TaaI	ACNGT	2 cut(s)	35, 325
TaqI	TCGA	1 cut(s)	141
TasI	AATT	1 cut(s)	461
TatI	WGTACW	1 cut(s)	381
TfiI	GAWTC	2 cut(s)	371, 446
TscAI	CASTG	3 cut(s)	190, 283, 328
TseI	GCWGC	3 cut(s)	136, 530, 547
TspDTI	ATGAA	1 cut(s)	368
TspRI	CASTG	3 cut(s)	190, 283, 328
XhoI	CTCGAG	1 cut(s)	140
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.