MD15G1088200.v1.1

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
6153121 .. 6156696
3576 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1088200.v1.1.491

Sequence Viewer

Length: 1161 bp
ATGGATTCGAGTGCCTCAGTTCTCTTGTCCTCTCCATCAAAGCTCGAAAACCATCAGGAAACCAATAGCCATATCCAAAAGGGAGGTATTGCTCCTTTCATTGACTCATCATATTTGCAAAAACAATCCCATGTCCCCACTGGTTTCATTTGGCCTGAAAGTCACTTGGTTGCTGCTCTTGAGGAGCTCAATGAACCATTGGTGGATCTTGAGGGTTTCTTCAAGGGTGATGCTGTGGCAACCGAGCATGCTGCCAAACTCATTAGGGCATCTTGCTTGAGCCATGGTTTTTTCCAAGTGACCAACCACGGCGTTGATCCAAATCTCCTCAAACTCGCTGATGATCACATGGATCATTTCTTCAAGCTCCCCGTCGAAGAGAAAGCAAAGGTGAAAAGGGTACCTGGTAGCCCTTGGGGTTATTCTGGGTCTCATGCTGATCGATTCTCAACCAATTTGCCATGGAAGGAAACTTTGTCTTTTGGTTTCCAAGCGAATGGCACCGACACAGTTGTGGCGGATTTCTTCAAATCCAAACTAGGCGAAGATTTTGAACAAACAGGGCTGGTCTATCAAAAGTACTGTGAATCAATGAATGTTTTGGCTCTTTCAATAATGGAGCTGCTTGCAATCAGCTTGGGAGTGGATCGGATGCATTACAGAGAATTTTTTGAGGATGCTCACTCAATCATGAGGTGCAACTTCTACCCGACTTGCCAAGAGCCAAGTCTTACTCTCGGAACCGGACCTCATTGTGATCCAACATCCTTGACCATACTCAATCAAGACCAAGTTGGAGGGCTTGATGTGTTTGTCAACAAGAAGTGGCATTCGGTTCGACCGATTCAAGGTGCCCTAGTCATCAACATTGGTGACACCTTCTCGGCATTATCGAATGGGAAATACAAGAGTTGCTTGCACAGGGCAATGGTGAACAGGCGCAAGGAGAGGAGATCGTTGGCATTCTTTTTGTGCCCAAGGGATGACAAGGTTGTGAAGCCCCCCGAGGATCTTCTGCGCAAAGAACAAGAGACAAGAAAGTACCCGGATTTCACATGGTCAGATTTGCTCCGATTCACTCAATACCATTACAGGGCTGATGAAGCTACCCTCCAAAACTTCACCAATTGGTTCCTATCTGAATCCAACTCCACCAATTAA

Protein Analysis

387

Amino Acids

43.7

Weight (kDa)

6.06

Isoelectric Point (pI)

35.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 66 - 167 5.6e-22 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 228 - 326 6.8e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g35050
malus_domestica MD15G1088200.v1.1
prunus_persica Prupe.1G442200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306941
rosa_laevigata RLG00000010753
rosa_multiflora Rmu_sc0007920.1_g000031
rosa_roxburghii Rroxscaffold_7G00161340
rosa_rugosa Rorug06G0354600.1
rosa_samantha Rh6AG466300 Rh6BG434800 Rh6CG481000 Rh6DG467500
rosa_wichuraiana Rw6G040620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1019
Acc65I GGTACC 1 cut(s) 400
AccB1I GGYRCC 3 cut(s) 400, 500, 851
AciI CCGC 1 cut(s) 518
AclWI GGATC 6 cut(s) 213, 311, 360, 654, 752, 1017
AcsI RAATTY 1 cut(s) 665
AfaI GTAC 3 cut(s) 402, 581, 1043
AfiI CCNNNNNNNGG 2 cut(s) 848, 1093
AgsI TTSAA 6 cut(s) 223, 364, 529, 554, 612, 848
AjnI CCWGG 1 cut(s) 403
AleI CACNNNNGTG 1 cut(s) 512
AluBI AGCT 6 cut(s) 43, 187, 367, 622, 636, 1106
AluI AGCT 6 cut(s) 43, 187, 367, 622, 636, 1106
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 2 cut(s) 435, 1025
AlwI GGATC 6 cut(s) 213, 311, 360, 654, 752, 1017
Ama87I CYCGRG 1 cut(s) 1004
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 3 cut(s) 173, 251, 622
ApoI RAATTY 1 cut(s) 665
Asp718I GGTACC 1 cut(s) 400
AspLEI GCGC 2 cut(s) 942, 1020
AspS9I GGNCC 1 cut(s) 746
AsuC2I CCSGG 1 cut(s) 1046
AsuHPI GGTGA 5 cut(s) 239, 403, 884, 943, 1114
AvaI CYCGRG 1 cut(s) 1004
AvaII GGWCC 1 cut(s) 746
BaeGI GKGCMC 2 cut(s) 856, 977
BanI GGYRCC 3 cut(s) 400, 500, 851
BanII GRGCYC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 3 cut(s) 160, 238, 609
BccI CCATC 2 cut(s) 43, 60
BceAI ACGGC 1 cut(s) 325
BcgI CGANNNNNNTGC 4 cut(s) 233, 267, 818, 852
BciT130I CCWGG 1 cut(s) 405
BclI TGATCA 1 cut(s) 343
BcnI CCSGG 1 cut(s) 1046
BcoDI GTCTC 2 cut(s) 435, 1025
BfaI CTAG 2 cut(s) 539, 857
BisI GCNGC 3 cut(s) 174, 252, 623
BlsI GCNGC 3 cut(s) 175, 253, 624
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 2 cut(s) 405, 1046
Bme18I GGWCC 1 cut(s) 746
BmeT110I CYCGRG 1 cut(s) 1004
BmgT120I GGNCC 1 cut(s) 746
BmiI GGNNCC 5 cut(s) 402, 502, 742, 853, 1133
BmrFI CCNGG 2 cut(s) 405, 1046
BmsI GCATC 4 cut(s) 220, 278, 642, 667
BpuEI CTTGAG 3 cut(s) 200, 230, 298
BpuMI CCSGG 1 cut(s) 1046
Bsa29I ATCGAT 1 cut(s) 442
BsaBI GATNNNNATC 1 cut(s) 321
BsaI GGTCTC 1 cut(s) 435
BsaJI CCNNGG 6 cut(s) 283, 307, 413, 461, 977, 1005
BsaWI WCCGGW 1 cut(s) 743
Bsc4I CCNNNNNNNGG 2 cut(s) 848, 1093
Bse1I ACTGG 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 933
Bse8I GATNNNNATC 1 cut(s) 321
BseBI CCWGG 1 cut(s) 405
BseCI ATCGAT 1 cut(s) 442
BseDI CCNNGG 6 cut(s) 283, 307, 413, 461, 977, 1005
BseGI GGATG 4 cut(s) 657, 682, 764, 988
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 2 cut(s) 848, 1093
BseMI GCAATG 1 cut(s) 933
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 3 cut(s) 197, 317, 964
BseSI GKGCMC 2 cut(s) 856, 977
BseXI GCAGC 3 cut(s) 160, 238, 609
Bsh1285I CGRYCG 1 cut(s) 842
BshFI GGCC 1 cut(s) 154
BshNI GGYRCC 3 cut(s) 400, 500, 851
BshVI ATCGAT 1 cut(s) 442
BsiEI CGRYCG 1 cut(s) 842
BsiHKAI GWGCWC 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 1004
BsiSI CCGG 2 cut(s) 744, 1046
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 848, 1093
BsmAI GTCTC 2 cut(s) 435, 1025
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 2 cut(s) 829, 962
BsnI GGCC 1 cut(s) 154
Bso31I GGTCTC 1 cut(s) 435
BsoBI CYCGRG 1 cut(s) 1004
Bsp1286I GDGCHC 3 cut(s) 189, 856, 977
Bsp143I GATC 9 cut(s) 205, 316, 343, 352, 439, 646, 757, 953, 1009
Bsp19I CCATGG 2 cut(s) 283, 461
BspACI CCGC 1 cut(s) 518
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 29
BspDI ATCGAT 1 cut(s) 442
BspHI TCATGA 1 cut(s) 690
BspLI GGNNCC 5 cut(s) 402, 502, 742, 853, 1133
BspPI GGATC 6 cut(s) 213, 311, 360, 654, 752, 1017
BspT107I GGYRCC 3 cut(s) 400, 500, 851
BspTNI GGTCTC 1 cut(s) 435
BsrDI GCAATG 1 cut(s) 933
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 6 cut(s) 283, 307, 413, 461, 977, 1005
BssMI GATC 9 cut(s) 205, 316, 343, 352, 439, 646, 757, 953, 1009
BssT1I CCWWGG 4 cut(s) 283, 413, 461, 977
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 2 cut(s) 511, 584
Bst6I CTCTTC 1 cut(s) 372
BstC8I GCNNGC 3 cut(s) 249, 627, 917
BstDEI CTNAG 1 cut(s) 16
BstDSI CCRYGG 3 cut(s) 283, 307, 461
BstF5I GGATG 4 cut(s) 657, 682, 764, 988
BstHHI GCGC 2 cut(s) 942, 1020
BstKTI GATC 9 cut(s) 208, 319, 346, 355, 442, 649, 760, 956, 1012
BstMAI GTCTC 2 cut(s) 435, 1025
BstMBI GATC 9 cut(s) 205, 316, 343, 352, 439, 646, 757, 953, 1009
BstMCI CGRYCG 1 cut(s) 842
BstMWI GCNNNNNNNGC 1 cut(s) 1103
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 2 cut(s) 403, 1044
BstSLI GKGCMC 2 cut(s) 856, 977
BstV1I GCAGC 3 cut(s) 160, 238, 609
BstX2I RGATCY 2 cut(s) 205, 1009
BstXI CCANNNNNNTGG 1 cut(s) 497
BstYI RGATCY 2 cut(s) 205, 1009
Bsu15I ATCGAT 1 cut(s) 442
BsuRI GGCC 1 cut(s) 154
BsuTUI ATCGAT 1 cut(s) 442
BtgI CCRYGG 3 cut(s) 283, 307, 461
BtsCI GGATG 4 cut(s) 657, 682, 764, 988
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 3 cut(s) 249, 627, 917
CciI TCATGA 1 cut(s) 690
CfoI GCGC 2 cut(s) 942, 1020
Cfr13I GGNCC 1 cut(s) 746
ClaI ATCGAT 1 cut(s) 442
CsiI ACCWGGT 1 cut(s) 403
Csp6I GTAC 3 cut(s) 401, 580, 1042
CviAII CATG 8 cut(s) 131, 248, 284, 349, 434, 462, 691, 1056
CviQI GTAC 3 cut(s) 401, 580, 1042
DdeI CTNAG 1 cut(s) 16
DpnI GATC 9 cut(s) 207, 318, 345, 354, 441, 648, 759, 955, 1011
DpnII GATC 9 cut(s) 205, 316, 343, 352, 439, 646, 757, 953, 1009
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
EciI GGCGGA 1 cut(s) 533
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 4 cut(s) 283, 413, 461, 977
Eco24I GRGCYC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 746
Eco53kI GAGCTC 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 1004
EcoICRI GAGCTC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 403
EcoT14I CCWWGG 4 cut(s) 283, 413, 461, 977
EcoT22I ATGCAT 1 cut(s) 657
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 4 cut(s) 283, 413, 461, 977
FaeI CATG 8 cut(s) 134, 251, 287, 352, 437, 465, 694, 1059
FalI AAGNNNNNCTT 2 cut(s) 899, 931
FaqI GGGAC 1 cut(s) 119
FatI CATG 8 cut(s) 130, 247, 283, 348, 433, 461, 690, 1055
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 3 cut(s) 174, 252, 623
FokI GGATG 4 cut(s) 664, 689, 751, 995
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 3 cut(s) 174, 252, 623
FspBI CTAG 2 cut(s) 539, 857
FspI TGCGCA 1 cut(s) 1019
GlaI GCGC 2 cut(s) 941, 1019
GluI GCNGC 3 cut(s) 174, 252, 623
HaeIII GGCC 1 cut(s) 154
HapII CCGG 2 cut(s) 744, 1046
HhaI GCGC 2 cut(s) 942, 1020
Hin1II CATG 8 cut(s) 134, 251, 287, 352, 437, 465, 694, 1059
Hin6I GCGC 2 cut(s) 940, 1018
HinP1I GCGC 2 cut(s) 940, 1018
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HinfI GANTC 7 cut(s) 5, 104, 444, 587, 844, 1074, 1142
HpaII CCGG 2 cut(s) 744, 1046
HphI GGTGA 5 cut(s) 239, 403, 884, 943, 1114
Hpy166II GTNNAC 2 cut(s) 817, 934
Hpy188I TCNGA 5 cut(s) 651, 740, 1063, 1073, 1141
Hpy188III TCNNGA 5 cut(s) 56, 179, 209, 691, 785
Hpy8I GTNNAC 2 cut(s) 817, 934
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 2 cut(s) 460, 889
HpyCH4III ACNGT 2 cut(s) 511, 584
HpyCH4V TGCA 5 cut(s) 118, 629, 655, 699, 919
HpyF10VI GCNNNNNNNGC 1 cut(s) 1103
HpyF3I CTNAG 1 cut(s) 16
Hsp92II CATG 8 cut(s) 134, 251, 287, 352, 437, 465, 694, 1059
HspAI GCGC 2 cut(s) 940, 1018
KpnI GGTACC 1 cut(s) 404
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 9 cut(s) 205, 316, 343, 352, 439, 646, 757, 953, 1009
LmnI GCTCC 5 cut(s) 97, 184, 372, 619, 1074
Lsp1109I GCAGC 3 cut(s) 160, 238, 609
LweI GCATC 4 cut(s) 220, 278, 642, 667
MabI ACCWGGT 1 cut(s) 403
MaeI CTAG 2 cut(s) 539, 857
MaeIII GTNAC 3 cut(s) 161, 298, 872
MalI GATC 9 cut(s) 207, 318, 345, 354, 441, 648, 759, 955, 1011
MboI GATC 9 cut(s) 205, 316, 343, 352, 439, 646, 757, 953, 1009
MboII GAAGA 6 cut(s) 211, 352, 389, 517, 557, 1004
MfeI CAATTG 1 cut(s) 1126
MflI RGATCY 2 cut(s) 205, 1009
MhlI GDGCHC 3 cut(s) 189, 856, 977
MluCI AATT 4 cut(s) 454, 665, 1126, 1156
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 2 cut(s) 775, 785
Mph1103I ATGCAT 1 cut(s) 657
MseI TTAA 1 cut(s) 1159
MslI CAYNNNNRTG 1 cut(s) 512
MspI CCGG 2 cut(s) 744, 1046
MspR9I CCNGG 2 cut(s) 405, 1046
MunI CAATTG 1 cut(s) 1126
Mva1269I GAATGC 2 cut(s) 829, 962
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 1 cut(s) 1103
NciI CCSGG 1 cut(s) 1046
NcoI CCATGG 2 cut(s) 283, 461
NdeII GATC 9 cut(s) 205, 316, 343, 352, 439, 646, 757, 953, 1009
NlaIII CATG 8 cut(s) 134, 251, 287, 352, 437, 465, 694, 1059
NlaIV GGNNCC 5 cut(s) 402, 502, 742, 853, 1133
NmeAIII GCCGAG 1 cut(s) 863
NmuCI GTSAC 3 cut(s) 161, 298, 872
NsbI TGCGCA 1 cut(s) 1019
NsiI ATGCAT 1 cut(s) 657
NspI RCATGY 1 cut(s) 251
OliI CACNNNNGTG 1 cut(s) 512
PaeI GCATGC 1 cut(s) 251
PagI TCATGA 1 cut(s) 690
PcsI WCGNNNNNNNCGW 2 cut(s) 839, 890
PctI GAATGC 2 cut(s) 829, 962
PfeI GAWTC 6 cut(s) 5, 444, 587, 844, 1074, 1142
PkrI GCNGC 3 cut(s) 175, 253, 624
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 5 cut(s) 402, 502, 742, 853, 1133
PspPI GGNCC 1 cut(s) 746
PsuI RGATCY 2 cut(s) 205, 1009
RsaI GTAC 3 cut(s) 402, 581, 1043
RsaNI GTAC 3 cut(s) 401, 580, 1042
RseI CAYNNNNRTG 1 cut(s) 512
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 1159
SatI GCNGC 3 cut(s) 174, 252, 623
Sau3AI GATC 9 cut(s) 205, 316, 343, 352, 439, 646, 757, 953, 1009
Sau96I GGNCC 1 cut(s) 746
ScaI AGTACT 1 cut(s) 581
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 2 cut(s) 405, 1046
SduI GDGCHC 3 cut(s) 189, 856, 977
SexAI ACCWGGT 1 cut(s) 403
SfaNI GCATC 4 cut(s) 220, 278, 642, 667
SinI GGWCC 1 cut(s) 746
SmiMI CAYNNNNRTG 1 cut(s) 512
SmlI CTYRAG 3 cut(s) 179, 209, 277
SmoI CTYRAG 3 cut(s) 179, 209, 277
SphI GCATGC 1 cut(s) 251
Sse9I AATT 4 cut(s) 454, 665, 1126, 1156
SsiI CCGC 1 cut(s) 518
SspMI CTAG 2 cut(s) 539, 857
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 2 cut(s) 403, 1044
StyI CCWWGG 4 cut(s) 283, 413, 461, 977
TaaI ACNGT 2 cut(s) 511, 584
TaqI TCGA 6 cut(s) 8, 45, 375, 442, 838, 893
TaqII GACCGA 1 cut(s) 856
TasI AATT 4 cut(s) 454, 665, 1126, 1156
TatI WGTACW 1 cut(s) 579
TfiI GAWTC 6 cut(s) 5, 444, 587, 844, 1074, 1142
Tru1I TTAA 1 cut(s) 1159
Tru9I TTAA 1 cut(s) 1159
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 3 cut(s) 161, 298, 872
TseI GCWGC 3 cut(s) 173, 251, 622
Tsp45I GTSAC 3 cut(s) 161, 298, 872
TspDTI ATGAA 5 cut(s) 88, 136, 207, 608, 1116
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 746
XapI RAATTY 1 cut(s) 665
XceI RCATGY 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XspI CTAG 2 cut(s) 539, 857
ZrmI AGTACT 1 cut(s) 581
Zsp2I ATGCAT 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.