Rroxscaffold_7G00161340

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
4123916 .. 4126687
2772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161340.1

Sequence Viewer

Length: 1065 bp
ATGGCCTCTATCCTTCTGTCATCACCATCAAAGCTCCATGCTCAACAAACCAACCGTGGCCCTATTGACTCTTCCTTTTTGCAGCGGCAAACCCGTGTTCCCAGTGGTTTCATTTGGCCAGAAGCCGACTTAGTGGCTGCTCACGAAGAGCTCGATGAGCCGCTGATTGATCTCAAGGGCTTCTTCAAGGGTGACGGTGTGGCAATCGAGAATGCTGCCAAGCTAATTAGGGCTTCTTGCTTAAGCCATGGCTTTTTCCAAGTCACCAACCACGGTGTGGACACCAGCCTCATCAAACTCGCTGACGACCATTTCGATCAGTTCTTTCACCTCCCCGTTAGCGAGAAGTTGAGGGTCAAGAGAGTCCCCGGTAGCCCTTGGGGTTATTCCGGCTCCCATGCCGACCGATTCTCCACCAAACTTCCCTGGAAGGAGACATTGTCTTTCGGCTTCCATGACAATGGCTCGGAGAAAGTTGTGGCGGATTTTTTTAAGTCCAAATTAGGGGATAGTTTTGAAGAGACTGGGAAGGTGTATCAAAAATACTGTGAAGCAATGAAAAGTTTGGCTCTTTCAATAATGGAGCTACTGGCAATCACCTTAGGAGTGAAGCGGTTGCACTACAGGGAATTCTTTGAGGATGCTCACTCTATCATGAGTTGGGGGCTTGAAGTGTTTGTCAACAACAAATGGCAATCTGTGAGACCTATTCAAGGTGCTCTGGTCATCAACATTGGTGACACCTTCACGTGTTTGAGCTCGCTCGAATCAATGTGTACGGACATGTTACAGGCACTATCAAACGGATTGTACAAGAGCTGCCTGCATCGGGCGAGTGTGAACGCAGTAAAGGAGAGGAGATCTTTGGCATTCTTTTTGTGCCCCACGGATGACAAGGTGGTGAAACCTCCAGAGGAACTTGTTACTGAAGTAGGGACAAGGAAATACCCGGATTTCACTTGGGCCAAGCTACTCGGATTCACTCAGAACCACTACAGGGCTGATGAGTCTACCCTCCAGCAATTCTCCAAGTTTACCCAGTCCGAATCCAAATCAGTTAATTAA

Protein Analysis

354

Amino Acids

39.83

Weight (kDa)

6.64

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 54 - 155 7.7e-22 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 220 - 295 2e-13 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g35050
malus_domestica MD15G1088200.v1.1
prunus_persica Prupe.1G442200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306941
rosa_laevigata RLG00000010753
rosa_multiflora Rmu_sc0007920.1_g000031
rosa_roxburghii Rroxscaffold_7G00161340
rosa_rugosa Rorug06G0354600.1
rosa_samantha Rh6AG466300 Rh6BG434800 Rh6CG481000 Rh6DG467500
rosa_wichuraiana Rw6G040620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 277
AccI GTMKAC 1 cut(s) 1010
AciI CCGC 4 cut(s) 85, 161, 482, 613
AcoI YGGCCR 1 cut(s) 116
AcsI RAATTY 1 cut(s) 629
AcuI CTGAAG 1 cut(s) 948
AcvI CACGTG 1 cut(s) 750
AdeI CACNNNGTG 1 cut(s) 277
AfaI GTAC 2 cut(s) 778, 812
AfiI CCNNNNNNNGG 5 cut(s) 277, 504, 713, 829, 997
AflII CTTAAG 1 cut(s) 241
AflIII ACRYGT 2 cut(s) 749, 783
AgsI TTSAA 5 cut(s) 187, 518, 576, 671, 713
AjnI CCWGG 1 cut(s) 425
AluBI AGCT 7 cut(s) 34, 151, 223, 586, 759, 819, 970
AluI AGCT 7 cut(s) 34, 151, 223, 586, 759, 819, 970
Alw21I GWGCWC 3 cut(s) 153, 721, 761
Alw26I GTCTC 3 cut(s) 428, 515, 697
AoxI GGCC 4 cut(s) 3, 58, 116, 963
ApeKI GCWGC 4 cut(s) 82, 137, 215, 819
ApoI RAATTY 1 cut(s) 629
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
AspS9I GGNCC 2 cut(s) 59, 963
AsuC2I CCSGG 2 cut(s) 369, 950
AsuHPI GGTGA 7 cut(s) 15, 203, 256, 320, 589, 749, 913
AxyI CCTNAGG 1 cut(s) 601
BaeGI GKGCMC 1 cut(s) 884
BalI TGGCCA 1 cut(s) 118
BanII GRGCYC 2 cut(s) 153, 761
BbrPI CACGTG 1 cut(s) 750
Bbv12I GWGCWC 3 cut(s) 153, 721, 761
BbvI GCAGC 4 cut(s) 94, 124, 202, 806
BccI CCATC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciT130I CCWGG 1 cut(s) 427
BcnI CCSGG 2 cut(s) 369, 950
BcoDI GTCTC 3 cut(s) 428, 515, 697
BfmI CTRYAG 2 cut(s) 622, 994
BfrI CTTAAG 1 cut(s) 241
BglII AGATCT 1 cut(s) 860
BisI GCNGC 6 cut(s) 83, 86, 138, 161, 216, 820
BlsI GCNGC 6 cut(s) 84, 87, 139, 162, 217, 821
Bme1390I CCNGG 3 cut(s) 369, 427, 950
BmgT120I GGNCC 2 cut(s) 59, 963
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 3 cut(s) 369, 427, 950
BmrI ACTGGG 3 cut(s) 96, 534, 1033
BmsI GCATC 2 cut(s) 631, 835
BmuI ACTGGG 3 cut(s) 96, 534, 1033
BpmI CTGGAG 2 cut(s) 894, 1001
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 2 cut(s) 369, 950
BsaAI YACGTR 1 cut(s) 750
BsaI GGTCTC 1 cut(s) 697
BsaJI CCNNGG 7 cut(s) 55, 247, 271, 367, 377, 425, 885
BsaXI ACNNNNNCTCC 4 cut(s) 395, 425, 425, 455
Bsc4I CCNNNNNNNGG 5 cut(s) 277, 504, 713, 829, 997
Bse1I ACTGG 4 cut(s) 102, 529, 594, 1039
Bse21I CCTNAGG 1 cut(s) 601
Bse3DI GCAATG 1 cut(s) 561
BseBI CCWGG 1 cut(s) 427
BseDI CCNNGG 7 cut(s) 55, 247, 271, 367, 377, 425, 885
BseGI GGATG 2 cut(s) 646, 895
BseLI CCNNNNNNNGG 5 cut(s) 277, 504, 713, 829, 997
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 1 cut(s) 998
BseNI ACTGG 4 cut(s) 102, 529, 594, 1039
BseRI GAGGAG 1 cut(s) 871
BseSI GKGCMC 1 cut(s) 884
BseXI GCAGC 4 cut(s) 94, 124, 202, 806
Bsh1285I CGRYCG 1 cut(s) 406
BshFI GGCC 4 cut(s) 5, 60, 118, 965
BsiEI CGRYCG 1 cut(s) 406
BsiHKAI GWGCWC 3 cut(s) 153, 721, 761
BsiSI CCGG 3 cut(s) 369, 390, 950
BslFI GGGAC 2 cut(s) 350, 949
BslI CCNNNNNNNGG 5 cut(s) 277, 504, 713, 829, 997
BsmAI GTCTC 3 cut(s) 428, 515, 697
BsmFI GGGAC 2 cut(s) 350, 949
BsmI GAATGC 2 cut(s) 217, 869
BsnI GGCC 4 cut(s) 5, 60, 118, 965
Bso31I GGTCTC 1 cut(s) 697
Bsp1286I GDGCHC 4 cut(s) 153, 721, 761, 884
Bsp1407I TGTACA 1 cut(s) 810
Bsp143I GATC 3 cut(s) 169, 316, 860
Bsp19I CCATGG 1 cut(s) 247
BspACI CCGC 4 cut(s) 85, 161, 482, 613
BspANI GGCC 4 cut(s) 5, 60, 118, 965
BspCNI CTCAG 1 cut(s) 997
BspHI TCATGA 1 cut(s) 654
BspLI GGNNCC 1 cut(s) 394
BspQI GCTCTTC 1 cut(s) 141
BspTI CTTAAG 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 697
BsrDI GCAATG 1 cut(s) 561
BsrGI TGTACA 1 cut(s) 810
BsrI ACTGG 4 cut(s) 102, 529, 594, 1039
BssECI CCNNGG 7 cut(s) 55, 247, 271, 367, 377, 425, 885
BssMI GATC 3 cut(s) 169, 316, 860
BssT1I CCWWGG 2 cut(s) 247, 377
Bst2UI CCWGG 1 cut(s) 427
Bst4CI ACNGT 4 cut(s) 56, 197, 275, 548
Bst6I CTCTTC 3 cut(s) 76, 141, 513
BstAFI CTTAAG 1 cut(s) 241
BstAUI TGTACA 1 cut(s) 810
BstBAI YACGTR 1 cut(s) 750
BstC8I GCNNGC 2 cut(s) 761, 824
BstDEI CTNAG 3 cut(s) 130, 601, 984
BstDSI CCRYGG 4 cut(s) 55, 247, 271, 885
BstENI CCTNNNNNAGG 1 cut(s) 711
BstF5I GGATG 2 cut(s) 646, 895
BstKTI GATC 3 cut(s) 172, 319, 863
BstMAI GTCTC 3 cut(s) 428, 515, 697
BstMBI GATC 3 cut(s) 169, 316, 860
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 427
BstNSI RCATGY 1 cut(s) 787
BstSCI CCNGG 3 cut(s) 367, 425, 948
BstSFI CTRYAG 2 cut(s) 622, 994
BstSLI GKGCMC 1 cut(s) 884
BstV1I GCAGC 4 cut(s) 94, 124, 202, 806
BstX2I RGATCY 1 cut(s) 860
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 1 cut(s) 860
Bsu36I CCTNAGG 1 cut(s) 601
BsuRI GGCC 4 cut(s) 5, 60, 118, 965
BtgI CCRYGG 4 cut(s) 55, 247, 271, 885
BtsCI GGATG 2 cut(s) 646, 895
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 761, 824
CciI TCATGA 1 cut(s) 654
Cfr13I GGNCC 2 cut(s) 59, 963
Csp6I GTAC 2 cut(s) 777, 811
CviAII CATG 6 cut(s) 38, 248, 398, 455, 655, 784
CviQI GTAC 2 cut(s) 777, 811
DdeI CTNAG 3 cut(s) 130, 601, 984
DpnI GATC 3 cut(s) 171, 318, 862
DpnII GATC 3 cut(s) 169, 316, 860
DraIII CACNNNGTG 1 cut(s) 277
EaeI YGGCCR 1 cut(s) 116
Eam1104I CTCTTC 3 cut(s) 76, 141, 513
EarI CTCTTC 3 cut(s) 76, 141, 513
EciI GGCGGA 1 cut(s) 497
Ecl136II GAGCTC 2 cut(s) 151, 759
Eco130I CCWWGG 2 cut(s) 247, 377
Eco24I GRGCYC 2 cut(s) 153, 761
Eco31I GGTCTC 1 cut(s) 697
Eco53kI GAGCTC 2 cut(s) 151, 759
Eco57I CTGAAG 1 cut(s) 948
Eco72I CACGTG 1 cut(s) 750
Eco81I CCTNAGG 1 cut(s) 601
EcoICRI GAGCTC 2 cut(s) 151, 759
EcoNI CCTNNNNNAGG 1 cut(s) 711
EcoRI GAATTC 1 cut(s) 629
EcoRII CCWGG 1 cut(s) 425
EcoT14I CCWWGG 2 cut(s) 247, 377
EcoT38I GRGCYC 2 cut(s) 153, 761
ErhI CCWWGG 2 cut(s) 247, 377
FaeI CATG 6 cut(s) 41, 251, 401, 458, 658, 787
FaiI YATR 6 cut(s) 39, 249, 399, 456, 656, 785
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FaqI GGGAC 2 cut(s) 350, 949
FatI CATG 6 cut(s) 37, 247, 397, 454, 654, 783
FblI GTMKAC 1 cut(s) 1010
Fnu4HI GCNGC 6 cut(s) 83, 86, 138, 161, 216, 820
FokI GGATG 2 cut(s) 653, 902
FriOI GRGCYC 2 cut(s) 153, 761
Fsp4HI GCNGC 6 cut(s) 83, 86, 138, 161, 216, 820
GluI GCNGC 6 cut(s) 83, 86, 138, 161, 216, 820
GsuI CTGGAG 2 cut(s) 894, 1001
HaeIII GGCC 4 cut(s) 5, 60, 118, 965
HapII CCGG 3 cut(s) 369, 390, 950
Hin1II CATG 6 cut(s) 41, 251, 401, 458, 658, 787
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HinfI GANTC 7 cut(s) 68, 363, 408, 767, 978, 1007, 1046
HpaII CCGG 3 cut(s) 369, 390, 950
HphI GGTGA 7 cut(s) 15, 203, 256, 320, 589, 749, 913
Hpy166II GTNNAC 6 cut(s) 280, 682, 777, 841, 1011, 1035
Hpy188I TCNGA 4 cut(s) 469, 977, 987, 1045
Hpy188III TCNNGA 5 cut(s) 143, 208, 358, 655, 911
Hpy8I GTNNAC 6 cut(s) 280, 682, 777, 841, 1011, 1035
HpyAV CCTTC 4 cut(s) 23, 424, 523, 754
HpyCH4III ACNGT 4 cut(s) 56, 197, 275, 548
HpyCH4IV ACGT 1 cut(s) 749
HpyCH4V TGCA 3 cut(s) 82, 619, 826
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 3 cut(s) 130, 601, 984
HpySE526I ACGT 1 cut(s) 749
Hsp92II CATG 6 cut(s) 41, 251, 401, 458, 658, 787
Kzo9I GATC 3 cut(s) 169, 316, 860
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 3 cut(s) 39, 398, 583
Lsp1109I GCAGC 4 cut(s) 94, 124, 202, 806
LweI GCATC 2 cut(s) 631, 835
MaeII ACGT 1 cut(s) 749
MaeIII GTNAC 5 cut(s) 191, 262, 737, 786, 922
MalI GATC 3 cut(s) 171, 318, 862
MboI GATC 3 cut(s) 169, 316, 860
MboII GAAGA 4 cut(s) 63, 158, 175, 530
MflI RGATCY 1 cut(s) 860
MhlI GDGCHC 4 cut(s) 153, 721, 761, 884
MlsI TGGCCA 1 cut(s) 118
MluCI AATT 5 cut(s) 225, 500, 629, 1022, 1060
MluNI TGGCCA 1 cut(s) 118
MlyI GAGTC 3 cut(s) 62, 372, 1016
MnlI CCTC 9 cut(s) 16, 299, 341, 345, 631, 849, 907, 918, 1025
Mox20I TGGCCA 1 cut(s) 118
MscI TGGCCA 1 cut(s) 118
MseI TTAA 4 cut(s) 242, 492, 1059, 1063
MslI CAYNNNNRTG 1 cut(s) 459
Msp20I TGGCCA 1 cut(s) 118
MspA1I CMGCKG 2 cut(s) 85, 163
MspCI CTTAAG 1 cut(s) 241
MspI CCGG 3 cut(s) 369, 390, 950
MspR9I CCNGG 3 cut(s) 369, 427, 950
Mva1269I GAATGC 2 cut(s) 217, 869
MvaI CCWGG 1 cut(s) 427
MwoI GCNNNNNNNGC 1 cut(s) 157
NciI CCSGG 2 cut(s) 369, 950
NcoI CCATGG 1 cut(s) 247
NdeII GATC 3 cut(s) 169, 316, 860
NlaIII CATG 6 cut(s) 41, 251, 401, 458, 658, 787
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 3 cut(s) 191, 262, 737
NspI RCATGY 1 cut(s) 787
PacI TTAATTAA 1 cut(s) 1063
PagI TCATGA 1 cut(s) 654
PciI ACATGT 1 cut(s) 783
PciSI GCTCTTC 1 cut(s) 141
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 312
PctI GAATGC 2 cut(s) 217, 869
PfeI GAWTC 4 cut(s) 408, 767, 978, 1046
PflFI GACNNNGTC 1 cut(s) 439
PflMI CCANNNNNTGG 1 cut(s) 277
PkrI GCNGC 6 cut(s) 84, 87, 139, 162, 217, 821
PleI GAGTC 3 cut(s) 62, 371, 1015
PmaCI CACGTG 1 cut(s) 750
PmlI CACGTG 1 cut(s) 750
PpsI GAGTC 3 cut(s) 62, 371, 1015
Ppu21I YACGTR 1 cut(s) 750
PscI ACATGT 1 cut(s) 783
Psp124BI GAGCTC 2 cut(s) 153, 761
Psp6I CCWGG 1 cut(s) 425
PspCI CACGTG 1 cut(s) 750
PspGI CCWGG 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 2 cut(s) 59, 963
PsuI RGATCY 1 cut(s) 860
PsyI GACNNNGTC 1 cut(s) 439
RsaI GTAC 2 cut(s) 778, 812
RsaNI GTAC 2 cut(s) 777, 811
RseI CAYNNNNRTG 1 cut(s) 459
SacI GAGCTC 2 cut(s) 153, 761
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 4 cut(s) 242, 492, 1059, 1063
SatI GCNGC 6 cut(s) 83, 86, 138, 161, 216, 820
Sau3AI GATC 3 cut(s) 169, 316, 860
Sau96I GGNCC 2 cut(s) 59, 963
SchI GAGTC 3 cut(s) 62, 372, 1016
ScrFI CCNGG 3 cut(s) 369, 427, 950
SduI GDGCHC 4 cut(s) 153, 721, 761, 884
SfaNI GCATC 2 cut(s) 631, 835
SfcI CTRYAG 2 cut(s) 622, 994
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 2 cut(s) 173, 241
SmoI CTYRAG 2 cut(s) 173, 241
Sse9I AATT 5 cut(s) 225, 500, 629, 1022, 1060
SsiI CCGC 4 cut(s) 85, 161, 482, 613
SstI GAGCTC 2 cut(s) 153, 761
StyD4I CCNGG 3 cut(s) 367, 425, 948
StyI CCWWGG 2 cut(s) 247, 377
TaaI ACNGT 4 cut(s) 56, 197, 275, 548
TaiI ACGT 1 cut(s) 752
TaqI TCGA 4 cut(s) 153, 207, 315, 765
TaqII GACCGA 1 cut(s) 420
TasI AATT 5 cut(s) 225, 500, 629, 1022, 1060
TatI WGTACW 1 cut(s) 810
TauI GCSGC 2 cut(s) 88, 163
TfiI GAWTC 4 cut(s) 408, 767, 978, 1046
Tru1I TTAA 4 cut(s) 242, 492, 1059, 1063
Tru9I TTAA 4 cut(s) 242, 492, 1059, 1063
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 3 cut(s) 191, 262, 737
TseI GCWGC 4 cut(s) 82, 137, 215, 819
Tsp45I GTSAC 3 cut(s) 191, 262, 737
TspDTI ATGAA 2 cut(s) 100, 572
TspGWI ACGGA 3 cut(s) 794, 819, 902
TspRI CASTG 1 cut(s) 109
Tth111I GACNNNGTC 1 cut(s) 439
Van91I CCANNNNNTGG 1 cut(s) 277
Vha464I CTTAAG 1 cut(s) 241
XagI CCTNNNNNAGG 1 cut(s) 711
XapI RAATTY 1 cut(s) 629
XceI RCATGY 1 cut(s) 787
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.