Rw6G040620

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
64400184 .. 64405597
5414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G040620.1

Sequence Viewer

Length: 1146 bp
ATGGCCTCTATTCTTCTGTCATCGCCATCAAAGCTCCATGTTCAACAAACCAACCGTGGCGCTATTGACTCTTCCTTTTTGCAGCGGCAAACCCGTGTTCCCAGTGGTTTCATTTGGCCAGAAGCCGACTTAGTGGCCGCTCACGAAGAGCTCGATGAACCGCTGATTGATCTCAAGGGCTTCTTCAAGGGTGACGGTGTGGCAATCGAGAATGCTGCCAAGCTAATTAGGGCTTCTTGCTTAAGCCATGGCTTTTTCCAAGTCACCAACCACGGTGTGGACACCAGCCTCATCAAACTCGCTGACGACCATTTGGATCAGTTCTTTCACCTCCCCGTTAGCGAGAAGTTGAGGGTCAAGAGAGTCCCCGGTAGCCCTTGGGGCTATTCCGGCTCCCATGCCGACCGATTCTCCACCAAACTTCCCTGGAAGGAGACATTGGCTATGTTTGGTATGGCTCCATTGTCTTTCGGCTTCCATGACAATGGCTCGGAGAAAGTTGTGGCGGATTTCTTTAAGTCCAAATTAGGGGATAGTTTTGAAGAGACTGGGAAGGTGTATCAAAAATACTGTGAAGCAATGAAGAGTTTGGCTCTTTCAATAATGGAGCTACTGGCAATCACCTTAGGAGTGAAGCGGTTGCACTACAGGGAATTCTTTGAGGATGCTCACTCTATCATGAGGTGCAACTACTATCCGACTTGCCAAGAGCCAAGCCTTTCTCTTGGGACTGGTCCTCATTGTGATCCAACATCCCTAACCATTCTTCACCAAGACCAAGTTGGGGGGCTTGAAGTGTTTGTCAACAACAAATGGCAATCTGTGAGACCTATTCAAGGTGCTCTGGTCATCAACATTGGTGACACCTTCACGGCACTATCGAATGGATTGTACAAGAGCTGCCTGCATCGGGCGAGTGTGAACGCAGTAAAGGAGAGGAGATCTTTGGCATTCTTTTTGTGCCCCAAGGATGACAAGGTGGTGAAACCTCCAGAGGAACTTATTACTGAAGTAGGGACAAGGAAATACCCGGATTTCACTTGGGCCAAGCTACTCGGATTCACTCAGAACCACTACAGGGCTGATGAGTCTACCCTCCAGCAATTCTCCAAGTTTACCCAGTCCGAATCCAAATCAGTTAATTAA

Protein Analysis

381

Amino Acids

42.66

Weight (kDa)

6.92

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 54 - 149 3.6e-20 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 224 - 322 9.5e-34 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g35050
malus_domestica MD15G1088200.v1.1
prunus_persica Prupe.1G442200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306941
rosa_laevigata RLG00000010753
rosa_multiflora Rmu_sc0007920.1_g000031
rosa_roxburghii Rroxscaffold_7G00161340
rosa_rugosa Rorug06G0354600.1
rosa_samantha Rh6AG466300 Rh6BG434800 Rh6CG481000 Rh6DG467500
rosa_wichuraiana Rw6G040620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 277
AccBSI CCGCTC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 1091
AciI CCGC 5 cut(s) 85, 138, 161, 506, 637
AclWI GGATC 2 cut(s) 324, 740
AcoI YGGCCR 2 cut(s) 116, 135
AcsI RAATTY 1 cut(s) 653
AcuI CTGAAG 1 cut(s) 1029
AdeI CACNNNGTG 1 cut(s) 277
AfaI GTAC 1 cut(s) 893
AfiI CCNNNNNNNGG 6 cut(s) 277, 528, 784, 836, 910, 1078
AflII CTTAAG 1 cut(s) 241
AgsI TTSAA 6 cut(s) 44, 187, 542, 600, 794, 836
AjnI CCWGG 1 cut(s) 425
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AluBI AGCT 6 cut(s) 34, 151, 223, 610, 900, 1051
AluI AGCT 6 cut(s) 34, 151, 223, 610, 900, 1051
Alw21I GWGCWC 2 cut(s) 153, 844
Alw26I GTCTC 3 cut(s) 428, 539, 820
AlwI GGATC 2 cut(s) 324, 740
AoxI GGCC 4 cut(s) 3, 116, 135, 1044
ApeKI GCWGC 3 cut(s) 82, 215, 900
ApoI RAATTY 1 cut(s) 653
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 734, 1044
AsuC2I CCSGG 2 cut(s) 369, 1031
AsuHPI GGTGA 7 cut(s) 203, 256, 320, 613, 761, 872, 994
AvaII GGWCC 1 cut(s) 734
AxyI CCTNAGG 1 cut(s) 625
BaeGI GKGCMC 1 cut(s) 965
BalI TGGCCA 1 cut(s) 118
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 2 cut(s) 153, 844
BbvI GCAGC 3 cut(s) 94, 202, 887
BccI CCATC 1 cut(s) 34
BceAI ACGGC 1 cut(s) 888
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciT130I CCWGG 1 cut(s) 427
BcnI CCSGG 2 cut(s) 369, 1031
BcoDI GTCTC 3 cut(s) 428, 539, 820
BfmI CTRYAG 2 cut(s) 646, 1075
BfoI RGCGCY 1 cut(s) 63
BfrI CTTAAG 1 cut(s) 241
BglI GCCNNNNNGGC 1 cut(s) 381
BglII AGATCT 1 cut(s) 941
BisI GCNGC 5 cut(s) 83, 86, 138, 216, 901
BlsI GCNGC 5 cut(s) 84, 87, 139, 217, 902
Bme1390I CCNGG 3 cut(s) 369, 427, 1031
Bme18I GGWCC 1 cut(s) 734
BmgT120I GGNCC 2 cut(s) 734, 1044
BmiI GGNNCC 2 cut(s) 394, 459
BmrFI CCNGG 3 cut(s) 369, 427, 1031
BmrI ACTGGG 3 cut(s) 96, 558, 1114
BmsI GCATC 2 cut(s) 655, 916
BmuI ACTGGG 3 cut(s) 96, 558, 1114
BplI GAGNNNNNCTC 2 cut(s) 577, 609
BpmI CTGGAG 2 cut(s) 975, 1082
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 2 cut(s) 369, 1031
BsaI GGTCTC 1 cut(s) 820
BsaJI CCNNGG 7 cut(s) 55, 247, 271, 367, 377, 425, 966
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bsc4I CCNNNNNNNGG 6 cut(s) 277, 528, 784, 836, 910, 1078
Bse1I ACTGG 5 cut(s) 102, 553, 618, 736, 1120
Bse21I CCTNAGG 1 cut(s) 625
Bse3DI GCAATG 1 cut(s) 585
BseBI CCWGG 1 cut(s) 427
BseDI CCNNGG 7 cut(s) 55, 247, 271, 367, 377, 425, 966
BseGI GGATG 3 cut(s) 670, 752, 976
BseLI CCNNNNNNNGG 6 cut(s) 277, 528, 784, 836, 910, 1078
BseMI GCAATG 1 cut(s) 585
BseMII CTCAG 1 cut(s) 1079
BseNI ACTGG 5 cut(s) 102, 553, 618, 736, 1120
BseRI GAGGAG 1 cut(s) 952
BseSI GKGCMC 1 cut(s) 965
BseXI GCAGC 3 cut(s) 94, 202, 887
Bsh1285I CGRYCG 1 cut(s) 406
BshFI GGCC 4 cut(s) 5, 118, 137, 1046
BsiEI CGRYCG 1 cut(s) 406
BsiHKAI GWGCWC 2 cut(s) 153, 844
BsiSI CCGG 3 cut(s) 369, 390, 1031
BslFI GGGAC 3 cut(s) 350, 742, 1030
BslI CCNNNNNNNGG 6 cut(s) 277, 528, 784, 836, 910, 1078
BsmAI GTCTC 3 cut(s) 428, 539, 820
BsmFI GGGAC 3 cut(s) 350, 742, 1030
BsmI GAATGC 2 cut(s) 217, 950
BsnI GGCC 4 cut(s) 5, 118, 137, 1046
Bso31I GGTCTC 1 cut(s) 820
Bsp1286I GDGCHC 3 cut(s) 153, 844, 965
Bsp1407I TGTACA 1 cut(s) 891
Bsp143I GATC 4 cut(s) 169, 316, 745, 941
Bsp19I CCATGG 1 cut(s) 247
BspACI CCGC 5 cut(s) 85, 138, 161, 506, 637
BspANI GGCC 4 cut(s) 5, 118, 137, 1046
BspCNI CTCAG 1 cut(s) 1078
BspHI TCATGA 1 cut(s) 678
BspLI GGNNCC 2 cut(s) 394, 459
BspPI GGATC 2 cut(s) 324, 740
BspQI GCTCTTC 1 cut(s) 141
BspTI CTTAAG 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 820
BsrBI CCGCTC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 585
BsrGI TGTACA 1 cut(s) 891
BsrI ACTGG 5 cut(s) 102, 553, 618, 736, 1120
BssECI CCNNGG 7 cut(s) 55, 247, 271, 367, 377, 425, 966
BssMI GATC 4 cut(s) 169, 316, 745, 941
BssT1I CCWWGG 3 cut(s) 247, 377, 966
Bst2UI CCWGG 1 cut(s) 427
Bst4CI ACNGT 4 cut(s) 56, 197, 275, 572
Bst6I CTCTTC 4 cut(s) 76, 141, 537, 578
BstAFI CTTAAG 1 cut(s) 241
BstAUI TGTACA 1 cut(s) 891
BstC8I GCNNGC 1 cut(s) 905
BstDEI CTNAG 3 cut(s) 130, 625, 1065
BstDSI CCRYGG 3 cut(s) 55, 247, 271
BstENI CCTNNNNNAGG 1 cut(s) 834
BstF5I GGATG 3 cut(s) 670, 752, 976
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 4 cut(s) 172, 319, 748, 944
BstMAI GTCTC 3 cut(s) 428, 539, 820
BstMBI GATC 4 cut(s) 169, 316, 745, 941
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 3 cut(s) 31, 381, 390
BstNI CCWGG 1 cut(s) 427
BstSCI CCNGG 3 cut(s) 367, 425, 1029
BstSFI CTRYAG 2 cut(s) 646, 1075
BstSLI GKGCMC 1 cut(s) 965
BstV1I GCAGC 3 cut(s) 94, 202, 887
BstX2I RGATCY 1 cut(s) 941
BstXI CCANNNNNNTGG 1 cut(s) 485
BstYI RGATCY 1 cut(s) 941
Bsu36I CCTNAGG 1 cut(s) 625
BsuRI GGCC 4 cut(s) 5, 118, 137, 1046
BtgI CCRYGG 3 cut(s) 55, 247, 271
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 3 cut(s) 670, 752, 976
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 905
CciI TCATGA 1 cut(s) 678
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 2 cut(s) 734, 1044
Csp6I GTAC 1 cut(s) 892
CviAII CATG 5 cut(s) 38, 248, 398, 479, 679
CviQI GTAC 1 cut(s) 892
DdeI CTNAG 3 cut(s) 130, 625, 1065
DpnI GATC 4 cut(s) 171, 318, 747, 943
DpnII GATC 4 cut(s) 169, 316, 745, 941
DraIII CACNNNGTG 1 cut(s) 277
EaeI YGGCCR 2 cut(s) 116, 135
Eam1104I CTCTTC 4 cut(s) 76, 141, 537, 578
EarI CTCTTC 4 cut(s) 76, 141, 537, 578
EciI GGCGGA 1 cut(s) 521
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 3 cut(s) 247, 377, 966
Eco24I GRGCYC 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 820
Eco47I GGWCC 1 cut(s) 734
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 1029
Eco81I CCTNAGG 1 cut(s) 625
EcoICRI GAGCTC 1 cut(s) 151
EcoNI CCTNNNNNAGG 1 cut(s) 834
EcoRI GAATTC 1 cut(s) 653
EcoRII CCWGG 1 cut(s) 425
EcoT14I CCWWGG 3 cut(s) 247, 377, 966
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 3 cut(s) 247, 377, 966
FaeI CATG 5 cut(s) 41, 251, 401, 482, 682
FaiI YATR 7 cut(s) 39, 249, 399, 446, 455, 480, 680
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FaqI GGGAC 3 cut(s) 350, 742, 1030
FatI CATG 5 cut(s) 37, 247, 397, 478, 678
FblI GTMKAC 1 cut(s) 1091
Fnu4HI GCNGC 5 cut(s) 83, 86, 138, 216, 901
FokI GGATG 3 cut(s) 677, 739, 983
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 5 cut(s) 83, 86, 138, 216, 901
GlaI GCGC 1 cut(s) 61
GluI GCNGC 5 cut(s) 83, 86, 138, 216, 901
GsuI CTGGAG 2 cut(s) 975, 1082
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 4 cut(s) 5, 118, 137, 1046
HapII CCGG 3 cut(s) 369, 390, 1031
HhaI GCGC 1 cut(s) 62
Hin1II CATG 5 cut(s) 41, 251, 401, 482, 682
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HinfI GANTC 6 cut(s) 68, 363, 408, 1059, 1088, 1127
HpaII CCGG 3 cut(s) 369, 390, 1031
HphI GGTGA 7 cut(s) 203, 256, 320, 613, 761, 872, 994
Hpy166II GTNNAC 5 cut(s) 280, 805, 922, 1092, 1116
Hpy188I TCNGA 5 cut(s) 493, 699, 1058, 1068, 1126
Hpy188III TCNNGA 5 cut(s) 143, 208, 358, 679, 992
Hpy8I GTNNAC 5 cut(s) 280, 805, 922, 1092, 1116
HpyAV CCTTC 3 cut(s) 424, 547, 877
HpyCH4III ACNGT 4 cut(s) 56, 197, 275, 572
HpyCH4V TGCA 4 cut(s) 82, 643, 687, 907
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 381, 390
HpyF3I CTNAG 3 cut(s) 130, 625, 1065
Hsp92II CATG 5 cut(s) 41, 251, 401, 482, 682
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 4 cut(s) 169, 316, 745, 941
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 4 cut(s) 39, 398, 463, 607
Lsp1109I GCAGC 3 cut(s) 94, 202, 887
LweI GCATC 2 cut(s) 655, 916
MaeIII GTNAC 3 cut(s) 191, 262, 860
MalI GATC 4 cut(s) 171, 318, 747, 943
MbiI CCGCTC 1 cut(s) 140
MboI GATC 4 cut(s) 169, 316, 745, 941
MboII GAAGA 7 cut(s) 5, 63, 158, 175, 554, 595, 758
MflI RGATCY 1 cut(s) 941
MhlI GDGCHC 3 cut(s) 153, 844, 965
MlsI TGGCCA 1 cut(s) 118
MluCI AATT 5 cut(s) 225, 524, 653, 1103, 1141
MluNI TGGCCA 1 cut(s) 118
MlyI GAGTC 3 cut(s) 62, 372, 1097
MmeI TCCRAC 2 cut(s) 722, 773
Mox20I TGGCCA 1 cut(s) 118
MscI TGGCCA 1 cut(s) 118
MseI TTAA 4 cut(s) 242, 516, 1140, 1144
MslI CAYNNNNRTG 1 cut(s) 483
Msp20I TGGCCA 1 cut(s) 118
MspA1I CMGCKG 2 cut(s) 85, 163
MspCI CTTAAG 1 cut(s) 241
MspI CCGG 3 cut(s) 369, 390, 1031
MspR9I CCNGG 3 cut(s) 369, 427, 1031
Mva1269I GAATGC 2 cut(s) 217, 950
MvaI CCWGG 1 cut(s) 427
MwoI GCNNNNNNNGC 3 cut(s) 31, 381, 390
NciI CCSGG 2 cut(s) 369, 1031
NcoI CCATGG 1 cut(s) 247
NdeII GATC 4 cut(s) 169, 316, 745, 941
NlaIII CATG 5 cut(s) 41, 251, 401, 482, 682
NlaIV GGNNCC 2 cut(s) 394, 459
NmuCI GTSAC 3 cut(s) 191, 262, 860
PacI TTAATTAA 1 cut(s) 1144
PagI TCATGA 1 cut(s) 678
PciSI GCTCTTC 1 cut(s) 141
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 878
PctI GAATGC 2 cut(s) 217, 950
PfeI GAWTC 3 cut(s) 408, 1059, 1127
PflMI CCANNNNNTGG 1 cut(s) 277
PkrI GCNGC 5 cut(s) 84, 87, 139, 217, 902
PleI GAGTC 3 cut(s) 62, 371, 1096
PpsI GAGTC 3 cut(s) 62, 371, 1096
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 425
PspGI CCWGG 1 cut(s) 425
PspN4I GGNNCC 2 cut(s) 394, 459
PspPI GGNCC 2 cut(s) 734, 1044
PsuI RGATCY 1 cut(s) 941
RsaI GTAC 1 cut(s) 893
RsaNI GTAC 1 cut(s) 892
RseI CAYNNNNRTG 1 cut(s) 483
SacI GAGCTC 1 cut(s) 153
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 4 cut(s) 242, 516, 1140, 1144
SatI GCNGC 5 cut(s) 83, 86, 138, 216, 901
Sau3AI GATC 4 cut(s) 169, 316, 745, 941
Sau96I GGNCC 2 cut(s) 734, 1044
SchI GAGTC 3 cut(s) 62, 372, 1097
ScrFI CCNGG 3 cut(s) 369, 427, 1031
SduI GDGCHC 3 cut(s) 153, 844, 965
SfaNI GCATC 2 cut(s) 655, 916
SfcI CTRYAG 2 cut(s) 646, 1075
SinI GGWCC 1 cut(s) 734
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 2 cut(s) 173, 241
SmoI CTYRAG 2 cut(s) 173, 241
Sse9I AATT 5 cut(s) 225, 524, 653, 1103, 1141
SsiI CCGC 5 cut(s) 85, 138, 161, 506, 637
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 3 cut(s) 367, 425, 1029
StyI CCWWGG 3 cut(s) 247, 377, 966
TaaI ACNGT 4 cut(s) 56, 197, 275, 572
TaqI TCGA 3 cut(s) 153, 207, 881
TaqII GACCGA 1 cut(s) 420
TasI AATT 5 cut(s) 225, 524, 653, 1103, 1141
TatI WGTACW 1 cut(s) 891
TauI GCSGC 2 cut(s) 88, 140
TfiI GAWTC 3 cut(s) 408, 1059, 1127
Tru1I TTAA 4 cut(s) 242, 516, 1140, 1144
Tru9I TTAA 4 cut(s) 242, 516, 1140, 1144
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 3 cut(s) 191, 262, 860
TseI GCWGC 3 cut(s) 82, 215, 900
Tsp45I GTSAC 3 cut(s) 191, 262, 860
TspDTI ATGAA 3 cut(s) 100, 171, 596
TspRI CASTG 1 cut(s) 109
Van91I CCANNNNNTGG 1 cut(s) 277
Vha464I CTTAAG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 734
XagI CCTNNNNNAGG 1 cut(s) 834
XapI RAATTY 1 cut(s) 653
XcmI CCANNNNNNNNNTGG 2 cut(s) 274, 779
XmiI GTMKAC 1 cut(s) 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.