RLG00000010753

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
4111027 .. 4113713
2687 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010753

Sequence Viewer

Length: 1122 bp
ATGGCCTCTATCCTTCTGTCATCACCATCAAAGCTCCATGCTCAACAAACCAACCGTGGCCCTATTGACTCTTCCTTTTTGGAGCGGCAAACCCATGTTCCCAGTGGTTTCATTTGGCCAGAAGCCGACTTAGTGGCTGCTCACGAAGAGCTCGATGAACCGCTGATTGATCTCAAGGGCTTCTTCAAGGGTGACGGTGTGGCAATCGAGAATGCTGCCAAGCTAATTAGGGCTTCTTGCTTAAGCCATGGCTTTTTCCAAGTCACCAACCACGGTGTGGACACCAGCCTCATCAAACTCGCTGACGACCATTTGAATCAGTTCTTTCACCTCCCCGTTAGCGAGAAGTTGAGGGTCAAGAGAGTCCCCGGTAGCCCTTGGGGTTATTCCGGCTCCCATGCCGACCGATTCTCCACCAAACTTCCCTGGAAGGAGACATTGTCTTTCGGCTTCCATGACAATGGCTCGGAGAAAGTTGTGGCGGATTTCTTTAAGTCCAAATTAGGGGATAGTTTTGAAGAGACTGGGAAGGTTTATCAAAAATACTGTGAAGCAATGAAGAGTTTGGCTCTTTCAATAATGGAGCTACTGGCAATCACCTTAGGAGTGAAGCGGTTGCACTACAGGGAATTCTTTGAGGATGCTCACTCTATCATGAGGTGCAACTACTATCCGACTTGCCAAGAGCCAAGCCTTTCTCTTGGGACTGGTCCTCATTGTGATCCAACATCCCTAACCATTCTTCACCAAGACCAAGTTGGGGGGCTTGACGTGTTTGTCCACAACAAATGGCAATCTGTGAGACCTATTCAAGGTGCTCTGGTCATCAACATTGGTGACACCTTCACGGCACTATCGAATGGATTGTACAAGAGCTGCCTGCATCGGGCGAGTGTGAACGCGGTAAAGGAGAGGAGATCTTTGGCATTCTTTTTGTGCCCGAAGGATGACAAGGTGGTGAAACCTCCAGAGGAACTTGTTACTGAAGTAGGGACAAGGAAATACCCGGATTTCACTTGGGCCAAGCTACTCGGATTCACTCAGAACCACTACAGGGCTGATGAGTCTACCCTCCAGCAATTCTCCAAGTTTACCCAGTCGGAATCCAAATCAGTTAATTAA

Protein Analysis

374

Amino Acids

41.81

Weight (kDa)

6.76

Isoelectric Point (pI)

33.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 54 - 155 5e-22 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 216 - 314 2.6e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g35050
malus_domestica MD15G1088200.v1.1
prunus_persica Prupe.1G442200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306941
rosa_laevigata RLG00000010753
rosa_multiflora Rmu_sc0007920.1_g000031
rosa_roxburghii Rroxscaffold_7G00161340
rosa_rugosa Rorug06G0354600.1
rosa_samantha Rh6AG466300 Rh6BG434800 Rh6CG481000 Rh6DG467500
rosa_wichuraiana Rw6G040620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 776
AccB7I CCANNNNNTGG 1 cut(s) 277
AccBSI CCGCTC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 1067
AccII CGCG 1 cut(s) 902
AciI CCGC 5 cut(s) 85, 161, 482, 613, 902
AclWI GGATC 1 cut(s) 716
AcoI YGGCCR 1 cut(s) 116
AcsI RAATTY 1 cut(s) 629
AcuI CTGAAG 1 cut(s) 1005
AdeI CACNNNGTG 1 cut(s) 277
AfaI GTAC 1 cut(s) 869
AfiI CCNNNNNNNGG 6 cut(s) 277, 504, 760, 812, 886, 1054
AflII CTTAAG 1 cut(s) 241
AflIII ACRYGT 1 cut(s) 771
AgsI TTSAA 5 cut(s) 187, 316, 518, 576, 812
AjiI CACGTC 1 cut(s) 772
AjnI CCWGG 1 cut(s) 425
AluBI AGCT 6 cut(s) 34, 151, 223, 586, 876, 1027
AluI AGCT 6 cut(s) 34, 151, 223, 586, 876, 1027
Alw21I GWGCWC 2 cut(s) 153, 820
Alw26I GTCTC 3 cut(s) 428, 515, 796
AlwI GGATC 1 cut(s) 716
AoxI GGCC 4 cut(s) 3, 58, 116, 1020
ApeKI GCWGC 3 cut(s) 137, 215, 876
ApoI RAATTY 1 cut(s) 629
Asp700I GAANNNNTTC 1 cut(s) 320
AspS9I GGNCC 3 cut(s) 59, 710, 1020
AsuC2I CCSGG 2 cut(s) 369, 1007
AsuHPI GGTGA 8 cut(s) 15, 203, 256, 320, 589, 737, 848, 970
AvaII GGWCC 1 cut(s) 710
AxyI CCTNAGG 1 cut(s) 601
BaeGI GKGCMC 1 cut(s) 941
BalI TGGCCA 1 cut(s) 118
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 2 cut(s) 153, 820
BbvI GCAGC 3 cut(s) 124, 202, 863
BccI CCATC 1 cut(s) 34
BceAI ACGGC 1 cut(s) 864
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciT130I CCWGG 1 cut(s) 427
BcnI CCSGG 2 cut(s) 369, 1007
BcoDI GTCTC 3 cut(s) 428, 515, 796
BfmI CTRYAG 2 cut(s) 622, 1051
BfrI CTTAAG 1 cut(s) 241
BglII AGATCT 1 cut(s) 917
BisI GCNGC 4 cut(s) 86, 138, 216, 877
BlsI GCNGC 4 cut(s) 87, 139, 217, 878
Bme1390I CCNGG 3 cut(s) 369, 427, 1007
Bme18I GGWCC 1 cut(s) 710
BmgBI CACGTC 1 cut(s) 772
BmgT120I GGNCC 3 cut(s) 59, 710, 1020
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 3 cut(s) 369, 427, 1007
BmrI ACTGGG 3 cut(s) 96, 534, 1090
BmsI GCATC 2 cut(s) 631, 892
BmuI ACTGGG 3 cut(s) 96, 534, 1090
BplI GAGNNNNNCTC 2 cut(s) 553, 585
BpmI CTGGAG 2 cut(s) 951, 1058
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 2 cut(s) 369, 1007
BsaI GGTCTC 1 cut(s) 796
BsaJI CCNNGG 6 cut(s) 55, 247, 271, 367, 377, 425
BsaXI ACNNNNNCTCC 4 cut(s) 395, 425, 425, 455
Bsc4I CCNNNNNNNGG 6 cut(s) 277, 504, 760, 812, 886, 1054
Bse1I ACTGG 5 cut(s) 102, 529, 594, 712, 1096
Bse21I CCTNAGG 1 cut(s) 601
Bse3DI GCAATG 1 cut(s) 561
BseBI CCWGG 1 cut(s) 427
BseDI CCNNGG 6 cut(s) 55, 247, 271, 367, 377, 425
BseGI GGATG 3 cut(s) 646, 728, 952
BseLI CCNNNNNNNGG 6 cut(s) 277, 504, 760, 812, 886, 1054
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 1 cut(s) 1055
BseNI ACTGG 5 cut(s) 102, 529, 594, 712, 1096
BseRI GAGGAG 1 cut(s) 928
BseSI GKGCMC 1 cut(s) 941
BseXI GCAGC 3 cut(s) 124, 202, 863
Bsh1236I CGCG 1 cut(s) 902
Bsh1285I CGRYCG 1 cut(s) 406
BshFI GGCC 4 cut(s) 5, 60, 118, 1022
BsiEI CGRYCG 1 cut(s) 406
BsiHKAI GWGCWC 2 cut(s) 153, 820
BsiSI CCGG 3 cut(s) 369, 390, 1007
BslFI GGGAC 3 cut(s) 350, 718, 1006
BslI CCNNNNNNNGG 6 cut(s) 277, 504, 760, 812, 886, 1054
BsmAI GTCTC 3 cut(s) 428, 515, 796
BsmFI GGGAC 3 cut(s) 350, 718, 1006
BsmI GAATGC 2 cut(s) 217, 926
BsnI GGCC 4 cut(s) 5, 60, 118, 1022
Bso31I GGTCTC 1 cut(s) 796
Bsp1286I GDGCHC 3 cut(s) 153, 820, 941
Bsp1407I TGTACA 1 cut(s) 867
Bsp143I GATC 3 cut(s) 169, 721, 917
Bsp19I CCATGG 1 cut(s) 247
BspACI CCGC 5 cut(s) 85, 161, 482, 613, 902
BspANI GGCC 4 cut(s) 5, 60, 118, 1022
BspCNI CTCAG 1 cut(s) 1054
BspFNI CGCG 1 cut(s) 902
BspHI TCATGA 1 cut(s) 654
BspLI GGNNCC 1 cut(s) 394
BspPI GGATC 1 cut(s) 716
BspQI GCTCTTC 1 cut(s) 141
BspTI CTTAAG 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 796
BsrBI CCGCTC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 561
BsrGI TGTACA 1 cut(s) 867
BsrI ACTGG 5 cut(s) 102, 529, 594, 712, 1096
BssECI CCNNGG 6 cut(s) 55, 247, 271, 367, 377, 425
BssMI GATC 3 cut(s) 169, 721, 917
BssT1I CCWWGG 2 cut(s) 247, 377
Bst2UI CCWGG 1 cut(s) 427
Bst4CI ACNGT 4 cut(s) 56, 197, 275, 548
Bst6I CTCTTC 4 cut(s) 76, 141, 513, 554
BstAFI CTTAAG 1 cut(s) 241
BstAUI TGTACA 1 cut(s) 867
BstC8I GCNNGC 1 cut(s) 881
BstDEI CTNAG 3 cut(s) 130, 601, 1041
BstDSI CCRYGG 3 cut(s) 55, 247, 271
BstENI CCTNNNNNAGG 1 cut(s) 810
BstF5I GGATG 3 cut(s) 646, 728, 952
BstFNI CGCG 1 cut(s) 902
BstKTI GATC 3 cut(s) 172, 724, 920
BstMAI GTCTC 3 cut(s) 428, 515, 796
BstMBI GATC 3 cut(s) 169, 721, 917
BstMCI CGRYCG 1 cut(s) 406
BstNI CCWGG 1 cut(s) 427
BstSCI CCNGG 3 cut(s) 367, 425, 1005
BstSFI CTRYAG 2 cut(s) 622, 1051
BstSLI GKGCMC 1 cut(s) 941
BstUI CGCG 1 cut(s) 902
BstV1I GCAGC 3 cut(s) 124, 202, 863
BstX2I RGATCY 1 cut(s) 917
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 1 cut(s) 917
Bsu36I CCTNAGG 1 cut(s) 601
BsuRI GGCC 4 cut(s) 5, 60, 118, 1022
BtgI CCRYGG 3 cut(s) 55, 247, 271
BtrI CACGTC 1 cut(s) 772
BtsCI GGATG 3 cut(s) 646, 728, 952
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 881
CciI TCATGA 1 cut(s) 654
Cfr13I GGNCC 3 cut(s) 59, 710, 1020
Csp6I GTAC 1 cut(s) 868
CviAII CATG 6 cut(s) 38, 95, 248, 398, 455, 655
CviQI GTAC 1 cut(s) 868
DdeI CTNAG 3 cut(s) 130, 601, 1041
DpnI GATC 3 cut(s) 171, 723, 919
DpnII GATC 3 cut(s) 169, 721, 917
DraIII CACNNNGTG 1 cut(s) 277
DrdI GACNNNNNNGTC 1 cut(s) 776
DseDI GACNNNNNNGTC 1 cut(s) 776
EaeI YGGCCR 1 cut(s) 116
Eam1104I CTCTTC 4 cut(s) 76, 141, 513, 554
EarI CTCTTC 4 cut(s) 76, 141, 513, 554
EciI GGCGGA 1 cut(s) 497
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 247, 377
Eco24I GRGCYC 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 796
Eco47I GGWCC 1 cut(s) 710
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 1005
Eco81I CCTNAGG 1 cut(s) 601
EcoICRI GAGCTC 1 cut(s) 151
EcoNI CCTNNNNNAGG 1 cut(s) 810
EcoRI GAATTC 1 cut(s) 629
EcoRII CCWGG 1 cut(s) 425
EcoT14I CCWWGG 2 cut(s) 247, 377
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 2 cut(s) 247, 377
FaeI CATG 6 cut(s) 41, 98, 251, 401, 458, 658
FaiI YATR 6 cut(s) 39, 96, 249, 399, 456, 656
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FaqI GGGAC 3 cut(s) 350, 718, 1006
FatI CATG 6 cut(s) 37, 94, 247, 397, 454, 654
FblI GTMKAC 1 cut(s) 1067
Fnu4HI GCNGC 4 cut(s) 86, 138, 216, 877
FokI GGATG 3 cut(s) 653, 715, 959
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 4 cut(s) 86, 138, 216, 877
GluI GCNGC 4 cut(s) 86, 138, 216, 877
GsuI CTGGAG 2 cut(s) 951, 1058
HaeIII GGCC 4 cut(s) 5, 60, 118, 1022
HapII CCGG 3 cut(s) 369, 390, 1007
Hin1II CATG 6 cut(s) 41, 98, 251, 401, 458, 658
HinfI GANTC 7 cut(s) 68, 316, 363, 408, 1035, 1064, 1103
HpaII CCGG 3 cut(s) 369, 390, 1007
HphI GGTGA 8 cut(s) 15, 203, 256, 320, 589, 737, 848, 970
Hpy166II GTNNAC 5 cut(s) 280, 781, 898, 1068, 1092
Hpy188I TCNGA 5 cut(s) 469, 675, 1034, 1044, 1102
Hpy188III TCNNGA 5 cut(s) 143, 208, 358, 655, 968
Hpy8I GTNNAC 5 cut(s) 280, 781, 898, 1068, 1092
HpyAV CCTTC 5 cut(s) 23, 424, 523, 853, 937
HpyCH4III ACNGT 4 cut(s) 56, 197, 275, 548
HpyCH4IV ACGT 1 cut(s) 771
HpyCH4V TGCA 3 cut(s) 619, 663, 883
HpyF3I CTNAG 3 cut(s) 130, 601, 1041
HpySE526I ACGT 1 cut(s) 771
Hsp92II CATG 6 cut(s) 41, 98, 251, 401, 458, 658
Kzo9I GATC 3 cut(s) 169, 721, 917
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 4 cut(s) 39, 82, 398, 583
Lsp1109I GCAGC 3 cut(s) 124, 202, 863
LweI GCATC 2 cut(s) 631, 892
MaeII ACGT 1 cut(s) 771
MaeIII GTNAC 4 cut(s) 191, 262, 836, 979
MalI GATC 3 cut(s) 171, 723, 919
MbiI CCGCTC 1 cut(s) 85
MboI GATC 3 cut(s) 169, 721, 917
MboII GAAGA 6 cut(s) 63, 158, 175, 530, 571, 734
MflI RGATCY 1 cut(s) 917
MhlI GDGCHC 3 cut(s) 153, 820, 941
MlsI TGGCCA 1 cut(s) 118
MluCI AATT 5 cut(s) 225, 500, 629, 1079, 1117
MluNI TGGCCA 1 cut(s) 118
MlyI GAGTC 3 cut(s) 62, 372, 1073
MmeI TCCRAC 3 cut(s) 698, 749, 1080
Mox20I TGGCCA 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 320
MscI TGGCCA 1 cut(s) 118
MseI TTAA 4 cut(s) 242, 492, 1116, 1120
MslI CAYNNNNRTG 1 cut(s) 459
Msp20I TGGCCA 1 cut(s) 118
MspA1I CMGCKG 1 cut(s) 163
MspCI CTTAAG 1 cut(s) 241
MspI CCGG 3 cut(s) 369, 390, 1007
MspR9I CCNGG 3 cut(s) 369, 427, 1007
Mva1269I GAATGC 2 cut(s) 217, 926
MvaI CCWGG 1 cut(s) 427
MvnI CGCG 1 cut(s) 902
NciI CCSGG 2 cut(s) 369, 1007
NcoI CCATGG 1 cut(s) 247
NdeII GATC 3 cut(s) 169, 721, 917
NlaIII CATG 6 cut(s) 41, 98, 251, 401, 458, 658
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 3 cut(s) 191, 262, 836
PacI TTAATTAA 1 cut(s) 1120
PagI TCATGA 1 cut(s) 654
PciSI GCTCTTC 1 cut(s) 141
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 854
PctI GAATGC 2 cut(s) 217, 926
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 4 cut(s) 316, 408, 1035, 1103
PflFI GACNNNGTC 1 cut(s) 439
PflMI CCANNNNNTGG 1 cut(s) 277
PkrI GCNGC 4 cut(s) 87, 139, 217, 878
PleI GAGTC 3 cut(s) 62, 371, 1072
PpsI GAGTC 3 cut(s) 62, 371, 1072
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 425
PspGI CCWGG 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 3 cut(s) 59, 710, 1020
PsuI RGATCY 1 cut(s) 917
PsyI GACNNNGTC 1 cut(s) 439
RsaI GTAC 1 cut(s) 869
RsaNI GTAC 1 cut(s) 868
RseI CAYNNNNRTG 1 cut(s) 459
SacI GAGCTC 1 cut(s) 153
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 4 cut(s) 242, 492, 1116, 1120
SatI GCNGC 4 cut(s) 86, 138, 216, 877
Sau3AI GATC 3 cut(s) 169, 721, 917
Sau96I GGNCC 3 cut(s) 59, 710, 1020
SchI GAGTC 3 cut(s) 62, 372, 1073
ScrFI CCNGG 3 cut(s) 369, 427, 1007
SduI GDGCHC 3 cut(s) 153, 820, 941
SfaNI GCATC 2 cut(s) 631, 892
SfcI CTRYAG 2 cut(s) 622, 1051
SinI GGWCC 1 cut(s) 710
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 2 cut(s) 173, 241
SmoI CTYRAG 2 cut(s) 173, 241
Sse9I AATT 5 cut(s) 225, 500, 629, 1079, 1117
SsiI CCGC 5 cut(s) 85, 161, 482, 613, 902
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 3 cut(s) 367, 425, 1005
StyI CCWWGG 2 cut(s) 247, 377
TaaI ACNGT 4 cut(s) 56, 197, 275, 548
TaiI ACGT 1 cut(s) 774
TaqI TCGA 3 cut(s) 153, 207, 857
TaqII GACCGA 1 cut(s) 420
TasI AATT 5 cut(s) 225, 500, 629, 1079, 1117
TatI WGTACW 1 cut(s) 867
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 4 cut(s) 316, 408, 1035, 1103
Tru1I TTAA 4 cut(s) 242, 492, 1116, 1120
Tru9I TTAA 4 cut(s) 242, 492, 1116, 1120
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 3 cut(s) 191, 262, 836
TseI GCWGC 3 cut(s) 137, 215, 876
Tsp45I GTSAC 3 cut(s) 191, 262, 836
TspDTI ATGAA 3 cut(s) 100, 171, 572
TspRI CASTG 1 cut(s) 109
Tth111I GACNNNGTC 1 cut(s) 439
Van91I CCANNNNNTGG 1 cut(s) 277
Vha464I CTTAAG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 710
XagI CCTNNNNNAGG 1 cut(s) 810
XapI RAATTY 1 cut(s) 629
XcmI CCANNNNNNNNNTGG 3 cut(s) 101, 274, 755
XmiI GTMKAC 1 cut(s) 1067
XmnI GAANNNNTTC 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.