MD15G1164900.v1.1

Belongs to the glycosyltransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011805
Physical Location & Seq
Forward (+)
12407116 .. 12413753
6638 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1164900.v1.1.491

Sequence Viewer

Length: 3168 bp
ATGGCGGGGAACGATTGGATAAACAGTTACCTGGAGGCGATTCTGGACGTTGGCCCGGGACTTGTCGACGACGCCAAATCCTCTCTGCTGCTCCGGGAGAGAGGACACTTCAGTCCCACCCGATACTTCGTCGAGGAAGTCATCACCGGCTTCGATGAGACCGATCTCCATCGCTCCTGGGTTCGCGCTGCGGCGACGAGGAGTCCACAGGAGAGGAACACTAGATTGGAAAATTTGTGCTGGCGGATTTGGAACTTGGCCCGCCAGAAGAAGCAGCTTGAGGGAGAAGAAGCTCAACGGATGGCGAAACGCCGCCTTGAACGTGAAAGAGGTCGCAGAGAAGCTACTGCTGATATGTCTGAAGACTTGTCCGAGGGAGAGAAGGGAGATTTGGTGAGTGACATATCAGCTCACGGTGATAGTCACAGAAGCAAACTGCCTAGAATTAACTCCGTTGACGCAATGGAGACATGGATTAGTCAGCAGAAGGGGAAAAAGCTATACATTGTACTAATAAGCCTTCATGGTCTTATACGAGGTGAACAAATGGAGCTCGGTCGGGACTCTGACACCGGTGGTCAGGTTAAGTATGTAGTAGAACTTGCAAGGGCTTTGGGTACCACACCAGGAGTGTACCGAGTTGATCTACTAACAAGACAAGTGTCTTCGCCGGATGTAGACTGGAGTTATGGTGAGCCCACAGAGATGCTGACTCCAATAAATACAGAATGTTTTGAAGAAGAGGTGGGAGAGAGCAGTGGTTCTTATATCATTCGTATACCATTCGGTCCCAAAGATAAATACATTCCCAAGGAAGAACTCTGGCCACACATACCTGAATTTGTTGATGGTGCATTGAACCACATAATGCAAATGTCCAAAGTTTTGGGTGAACAAGTTGGTGGTGGGAAGCCAGTCTGGCCTGTTGCCATCCATGGGCATTATGCAGATGCTGGTGACTCAGCTGCTCTTCTCTCTGGTGCTTTAAATGTACCGATGCTTTTTACTGGCCACTCACTCGGCCGAGATAAGTTGGAGCAACTTTTAAAGCAAGGCCGACTTTCAAGAGATGAGATCAACAAAACATATAAAATAATGCGTCGGATAGAGGCTGAGGAGTTAGCCCTTGATGCGTCTGAAATAGTTATTACCAGCACTAGACAGGAGATAGAAGAGCAATGGCGGTTGTATGATGGTTTTGATCCTATACTGGAGCGTAAACTACGAGCTAGGATCAGGCGCAATGTGAGCTGTTATGGAAGGTCCATGCCCCGCATGGTGATAATTCCTCCTGGAATGGAGTTCCATCATATTGTTCCGCATGATGGTGATATGGATGCTGAAACAGAAGCAAATGAAGACCATCCTACTTCTCCAGACCCACCTATTTGGTCTGAGATAATGCGTTTCTTTACCAATCCTCGCAAGCCTATGATTCTTGCCCTTGCTAGACCAGATCCAAAAAAGAACATCACAACTTTGCTCAAAGCATTTGGGGAATGTCGTCCACTAAGAGAGCTTGCTAACCTTACACTCATTATGGGTAACCGCGATGGAATTGATGAAATGTCAAGCACAAGTGCTTCTCTTCTTCTCTCAGTGCTCAAGCTTATTGACAAATATGATTTGTATGGGCAAGTCGCATACCCCAAACATCACAAACAGTCTGATGTTCCTGAGATATATCGTCTAGCAGCAAAGACAAAGGGTGTTTTCATTAATCCAGCTTTCATTGAGCCCTTTGGACTCACTTTAATTGAGGCAGCTGCTCATGGTTTACCTATTGTTGCCACAAAAAATGGAGGCCCTGTTGATATACATCAGGTACTTGACAATGGTCTTCTTATTGATCCTCATGATCAGCAGTCTATTGCTGATGCTCTCCTGAAGCTTGTTGCTGATAAGCAGCTTTGGGCAAGATGTCGGCAGAATGGGTTGAAGAACATTCACCTATTTTCGTGGCCCGAGCACTGCAAAACTTATCTATCCCGAATAGCCAGTGTCAAACAGAGGCAACCACATTGGCAGAGAAGTGAGGATGGAGGAGGCACTTCAGAATCAGATTCCCCAAGTGATTCCTTGAGAGATATACAAGATTTATCTTTGAACTTGAAGTTTTCAATGGATGGAGAAAAGAGCGAAACTAGTGTAAATGATAGTTTAGATTCTGAAGGAAATACTGCTGATAAAAGGAGTAAAATAGAGAGTGCTGTTTTGGCATGGTCAAAGGGTATTTCGAGGGACACTCGGAAGGCTGGGTTCTCAGAGAAAGCAGACCATAACAGTGCTGGAAAGTTCCCAGTTTTGAGGAGGAGGAAACATCTTATTGTCATTTCTGTGGATTGTGAAACCATTACAGAACTTAATGAAATTACAAAAAATATTTTTGAGGCTATGGGAAAGGAGAAGGCTGAAGGCTCTGTAGGATTCATATTGTCAACATCCTTGACCATAATCGAGATACGTTCATTTCTGGTTTCAGGGGGCTTGAACCCTAATGATTTTGATGCATATATTTGCAACAGTGGCAGTGATCTCTACTATCCATCTATTAATTCTGAGGAGCGCCCCTTTGTGGTCGACTTTTATTATCATTCACACATTGAATATCGTTGGGGTGGAGAAGGATTGAGGAAGACATTGGTACGCTGGGCAACTTCAATTAATGATAAGAAGACTGGGAGTGAGGAGATTGTTTCTGCAGCTGATCAACTTTCAACCGACTATTGTTATGCTTTCAAAGTGCAGACGCCAGGAAAGCTACCCTCGGTAAAGGAGCTCCGGAAGGTGCTGAGGATTCAGGCTTTACGGTGCCATGTAATTTACTGCCAAAACGGGACCAGAGTGAACGTTATTCCAGTATTGGCGTCTCGTTCTCAAGCCCTCAGGTATTTATATCTCCGATGGGGGGTAGACTTATCGAAAGTGGTGGTTGTCGCTGGAGAATGCGGGGATACAGACTACGAAGGGTTGCTTGGTGGACTGCACAAAAGTGTAGTGCTGAAAGGAGTTGCCAGCAATGCAATCAGTCAACTCCACACGAACCGAAACTACCCTCTATCCGATGTCCTGGCACTTGACACCCCCAACATAGTTCAGACCAGTGAAGGTTGCGGGAGCGACGATATCCGTGCTTCCTTGGAGAAACTAGGAGTTCTCAAGAACTAG

Protein Analysis

1056

Amino Acids

118.13

Weight (kDa)

6.09

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GT-B_Sucrose_synth PF00862 167 - 392 5.4e-12 Sucrose synthase first GT-B domain
Glycos_transf_1 PF00534 473 - 646 2.3e-23 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 477 - 634 2.3e-15 Glycosyl transferases group 1
S6PP PF05116 774 - 1003 1.8e-12 Sucrose-6F-phosphate phosphohydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20280
fragaria_vesca FvH4_1g02490 FvH4_1g02490 FvH4_1g02490
malus_domestica MD02G1022300.v1.1 MD15G1164900.v1.1
prunus_persica Prupe.7G249900_v2.0.a1
pyrus_communis pycom02g01920 pycom15g14780
rosa_chinensis RchiOBHm_Chr2g0087491
rosa_laevigata RLG00000015873
rosa_multiflora Rmu_sc0002299.1_g000009
rosa_roxburghii Rroxscaffold_2G00153510
rosa_rugosa Rorug01G0475900.1 Rorug01G0476000
rosa_samantha Rh2AG029400 Rh2BG029500 Rh2DG029400
rosa_wichuraiana Rw2G002330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 111
Acc65I GGTACC 1 cut(s) 617
AccB1I GGYRCC 2 cut(s) 617, 2811
AccI GTMKAC 5 cut(s) 66, 678, 778, 2580, 2913
AccII CGCG 2 cut(s) 186, 1551
AccIII TCCGGA 1 cut(s) 2781
AclI AACGTT 1 cut(s) 2850
AclWI GGATC 4 cut(s) 1196, 1241, 1451, 1844
AcoI YGGCCR 3 cut(s) 824, 1009, 1021
AcsI RAATTY 2 cut(s) 232, 839
AcuI CTGAAG 6 cut(s) 94, 381, 1907, 2037, 2190, 2433
AcyI GRCGYC 3 cut(s) 72, 2750, 2867
AfaI GTAC 6 cut(s) 510, 619, 635, 993, 1827, 2646
AfiI CCNNNNNNNGG 4 cut(s) 936, 1325, 2575, 2908
AgeI ACCGGT 1 cut(s) 572
AhdI GACNNNNNGTC 1 cut(s) 201
AhlI ACTAGT 1 cut(s) 2144
AjnI CCWGG 6 cut(s) 30, 176, 625, 1291, 2752, 3069
AjuI GAANNNNNNNTTGG 6 cut(s) 209, 241, 374, 406, 2958, 2990
AleI CACNNNNGTG 1 cut(s) 2991
Alw21I GWGCWC 4 cut(s) 555, 1605, 1971, 2781
Alw26I GTCTC 3 cut(s) 152, 461, 2874
AlwI GGATC 4 cut(s) 1196, 1241, 1451, 1844
AlwNI CAGNNNCTG 1 cut(s) 953
Ama87I CYCGRG 2 cut(s) 55, 1964
Aor13HI TCCGGA 1 cut(s) 2781
AoxI GGCC 9 cut(s) 52, 258, 824, 920, 1009, 1021, 1054, 1804, 1961
ApeKI GCWGC 9 cut(s) 88, 188, 274, 965, 1694, 1763, 1766, 1906, 2702
ApoI RAATTY 2 cut(s) 232, 839
AseI ATTAAT 3 cut(s) 1719, 2553, 2664
AsiGI ACCGGT 1 cut(s) 572
Asp718I GGTACC 1 cut(s) 617
AspLEI GCGC 3 cut(s) 188, 1242, 2568
AspS9I GGNCC 7 cut(s) 53, 259, 788, 1263, 1805, 1962, 2838
AsuC2I CCSGG 3 cut(s) 56, 57, 95
AvaI CYCGRG 2 cut(s) 55, 1964
AvaII GGWCC 3 cut(s) 788, 1263, 2838
AxyI CCTNAGG 1 cut(s) 2885
BalI TGGCCA 2 cut(s) 826, 1011
BanI GGYRCC 2 cut(s) 617, 2811
BanII GRGCYC 4 cut(s) 555, 699, 1740, 2781
BbsI GAAGAC 6 cut(s) 369, 657, 1365, 1832, 2642, 2681
Bbv12I GWGCWC 4 cut(s) 555, 1605, 1971, 2781
BbvCI CCTCAGC 2 cut(s) 1113, 2792
BbvI GCAGC 9 cut(s) 75, 175, 286, 952, 1706, 1753, 1775, 1918, 2714
BcgI CGANNNNNNTGC 2 cut(s) 3113, 3147
BciT130I CCWGG 6 cut(s) 32, 178, 627, 1293, 2754, 3071
BciVI GTATCC 1 cut(s) 2947
BclI TGATCA 2 cut(s) 1858, 2707
BcnI CCSGG 3 cut(s) 56, 57, 95
BcoDI GTCTC 3 cut(s) 152, 461, 2874
BcuI ACTAGT 1 cut(s) 2144
BfaI CTAG 9 cut(s) 222, 441, 1158, 1230, 1449, 1691, 2145, 3149, 3166
BfmI CTRYAG 2 cut(s) 2421, 2700
BfoI RGCGCY 1 cut(s) 2569
BfuI GTATCC 1 cut(s) 2947
BglI GCCNNNNNGGC 1 cut(s) 919
Bme1390I CCNGG 9 cut(s) 32, 56, 57, 95, 178, 627, 1293, 2754, 3071
Bme18I GGWCC 3 cut(s) 788, 1263, 2838
BmeRI GACNNNNNGTC 1 cut(s) 201
BmeT110I CYCGRG 2 cut(s) 55, 1964
BmgT120I GGNCC 7 cut(s) 53, 259, 788, 1263, 1805, 1962, 2838
BmiI GGNNCC 4 cut(s) 619, 790, 2813, 2839
BmrFI CCNGG 9 cut(s) 32, 56, 57, 95, 178, 627, 1293, 2754, 3071
BmrI ACTGGG 2 cut(s) 2294, 2688
BmsI GCATC 7 cut(s) 696, 940, 987, 1120, 1327, 1867, 2497
BmuI ACTGGG 2 cut(s) 2294, 2688
BoxI GACNNNNGTC 2 cut(s) 661, 1836
BpiI GAAGAC 6 cut(s) 369, 657, 1365, 1832, 2642, 2681
BplI GAGNNNNNCTC 2 cut(s) 2230, 2262
BpmI CTGGAG 5 cut(s) 53, 703, 1232, 1359, 2961
Bpu10I CCTNAGC 2 cut(s) 1113, 2792
BpuEI CTTGAG 5 cut(s) 299, 1589, 2101, 2862, 3143
BpuMI CCSGG 3 cut(s) 56, 57, 95
BsaBI GATNNNNATC 2 cut(s) 168, 1818
BsaHI GRCGYC 3 cut(s) 72, 2750, 2867
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 7 cut(s) 55, 177, 372, 810, 934, 2766, 3138
BsaWI WCCGGW 2 cut(s) 572, 2781
BsaXI ACNNNNNCTCC 6 cut(s) 378, 408, 676, 706, 1794, 1824
Bsc4I CCNNNNNNNGG 4 cut(s) 936, 1325, 2575, 2908
Bse118I RCCGGY 2 cut(s) 146, 572
Bse1I ACTGG 9 cut(s) 686, 914, 1012, 1215, 1998, 2300, 2683, 2858, 3102
Bse21I CCTNAGG 1 cut(s) 2885
Bse3DI GCAATG 4 cut(s) 468, 1184, 1249, 3025
Bse8I GATNNNNATC 2 cut(s) 168, 1818
BseAI TCCGGA 1 cut(s) 2781
BseBI CCWGG 6 cut(s) 32, 178, 627, 1293, 2754, 3071
BseDI CCNNGG 7 cut(s) 55, 177, 372, 810, 934, 2766, 3138
BseGI GGATG 8 cut(s) 306, 679, 930, 1342, 1363, 2044, 2131, 2441
BseJI GATNNNNATC 2 cut(s) 168, 1818
BseLI CCNNNNNNNGG 4 cut(s) 936, 1325, 2575, 2908
BseMI GCAATG 4 cut(s) 468, 1184, 1249, 3025
BseMII CTCAG 9 cut(s) 975, 1104, 1386, 1611, 1668, 2277, 2550, 2783, 2899
BseNI ACTGG 9 cut(s) 686, 914, 1012, 1215, 1998, 2300, 2683, 2858, 3102
BseRI GAGGAG 7 cut(s) 214, 1130, 2058, 2323, 2326, 2576, 2702
BseX3I CGGCCG 1 cut(s) 1021
BseXI GCAGC 9 cut(s) 75, 175, 286, 952, 1706, 1753, 1775, 1918, 2714
BseYI CCCAGC 2 cut(s) 2255, 2649
BsgI GTGCAG 2 cut(s) 2765, 2969
Bsh1236I CGCG 2 cut(s) 186, 1551
Bsh1285I CGRYCG 2 cut(s) 559, 1024
BshFI GGCC 9 cut(s) 54, 260, 826, 922, 1011, 1023, 1056, 1806, 1963
BshNI GGYRCC 2 cut(s) 617, 2811
BshTI ACCGGT 1 cut(s) 572
BsiEI CGRYCG 2 cut(s) 559, 1024
BsiHKAI GWGCWC 4 cut(s) 555, 1605, 1971, 2781
BsiHKCI CYCGRG 2 cut(s) 55, 1964
BsiSI CCGG 6 cut(s) 56, 94, 147, 573, 671, 2782
BslFI GGGAC 6 cut(s) 72, 99, 575, 774, 2255, 2851
BslI CCNNNNNNNGG 4 cut(s) 936, 1325, 2575, 2908
BsmAI GTCTC 3 cut(s) 152, 461, 2874
BsmBI CGTCTC 1 cut(s) 2874
BsmFI GGGAC 6 cut(s) 72, 99, 575, 774, 2255, 2851
BsmI GAATGC 1 cut(s) 2951
BsnI GGCC 9 cut(s) 54, 260, 826, 922, 1011, 1023, 1056, 1806, 1963
Bso31I GGTCTC 1 cut(s) 152
BsoBI CYCGRG 2 cut(s) 55, 1964
Bsp1286I GDGCHC 6 cut(s) 555, 699, 1605, 1740, 1971, 2781
Bsp13I TCCGGA 1 cut(s) 2781
Bsp19I CCATGG 1 cut(s) 934
BspANI GGCC 9 cut(s) 54, 260, 826, 922, 1011, 1023, 1056, 1806, 1963
BspCNI CTCAG 9 cut(s) 974, 1105, 1387, 1610, 1669, 2276, 2551, 2784, 2898
BspEI TCCGGA 1 cut(s) 2781
BspFNI CGCG 2 cut(s) 186, 1551
BspHI TCATGA 1 cut(s) 1855
BspLI GGNNCC 4 cut(s) 619, 790, 2813, 2839
BspMAI CTGCAG 1 cut(s) 2704
BspPI GGATC 4 cut(s) 1196, 1241, 1451, 1844
BspQI GCTCTTC 2 cut(s) 975, 1167
BspT107I GGYRCC 2 cut(s) 617, 2811
BspTNI GGTCTC 1 cut(s) 152
BsrDI GCAATG 4 cut(s) 468, 1184, 1249, 3025
BsrFI RCCGGY 2 cut(s) 146, 572
BsrI ACTGG 9 cut(s) 686, 914, 1012, 1215, 1998, 2300, 2683, 2858, 3102
BssAI RCCGGY 2 cut(s) 146, 572
BssECI CCNNGG 7 cut(s) 55, 177, 372, 810, 934, 2766, 3138
BssNAI GTATAC 1 cut(s) 779
BssNI GRCGYC 3 cut(s) 72, 2750, 2867
BssT1I CCWWGG 3 cut(s) 810, 934, 3138
Bst1107I GTATAC 1 cut(s) 779
Bst2UI CCWGG 6 cut(s) 32, 178, 627, 1293, 2754, 3071
Bst4CI ACNGT 6 cut(s) 26, 416, 1665, 2285, 2525, 2811
Bst6I CTCTTC 4 cut(s) 735, 975, 1167, 1593
BstACI GRCGYC 3 cut(s) 72, 2750, 2867
BstC8I GCNNGC 5 cut(s) 242, 262, 1427, 1521, 3016
BstDSI CCRYGG 1 cut(s) 934
BstEII GGTNACC 1 cut(s) 1544
BstF5I GGATG 8 cut(s) 306, 679, 930, 1342, 1363, 2044, 2131, 2441
BstFNI CGCG 2 cut(s) 186, 1551
BstH2I RGCGCY 1 cut(s) 2569
BstHHI GCGC 3 cut(s) 188, 1242, 2568
BstMAI GTCTC 3 cut(s) 152, 461, 2874
BstMCI CGRYCG 2 cut(s) 559, 1024
BstMWI GCNNNNNNNGC 7 cut(s) 919, 1130, 1248, 2216, 2526, 2758, 3020
BstNI CCWGG 6 cut(s) 32, 178, 627, 1293, 2754, 3071
BstPAI GACNNNNGTC 2 cut(s) 661, 1836
BstPI GGTNACC 1 cut(s) 1544
BstSCI CCNGG 9 cut(s) 30, 54, 55, 93, 176, 625, 1291, 2752, 3069
BstSFI CTRYAG 2 cut(s) 2421, 2700
BstUI CGCG 2 cut(s) 186, 1551
BstV1I GCAGC 9 cut(s) 75, 175, 286, 952, 1706, 1753, 1775, 1918, 2714
BstV2I GAAGAC 6 cut(s) 369, 657, 1365, 1832, 2642, 2681
BstX2I RGATCY 1 cut(s) 1456
BstXI CCANNNNNNTGG 2 cut(s) 886, 1389
BstYI RGATCY 1 cut(s) 1456
BstZ17I GTATAC 1 cut(s) 779
BstZI CGGCCG 1 cut(s) 1021
Bsu36I CCTNAGG 1 cut(s) 2885
BsuI GTATCC 1 cut(s) 2947
BsuRI GGCC 9 cut(s) 54, 260, 826, 922, 1011, 1023, 1056, 1806, 1963
BtgI CCRYGG 1 cut(s) 934
BtgZI GCGATG 2 cut(s) 155, 1566
BtsCI GGATG 8 cut(s) 306, 679, 930, 1342, 1363, 2044, 2131, 2441
BtsI GCAGTG 3 cut(s) 763, 1969, 2536
BtsIMutI CAGTG 8 cut(s) 763, 1605, 1969, 2005, 2290, 2530, 2536, 3109
Cac8I GCNNGC 5 cut(s) 242, 262, 1427, 1521, 3016
CaiI CAGNNNCTG 1 cut(s) 953
CciI TCATGA 1 cut(s) 1855
CfoI GCGC 3 cut(s) 188, 1242, 2568
Cfr10I RCCGGY 2 cut(s) 146, 572
Cfr13I GGNCC 7 cut(s) 53, 259, 788, 1263, 1805, 1962, 2838
Cfr9I CCCGGG 1 cut(s) 55
CseI GACGC 6 cut(s) 80, 467, 1088, 1122, 2758, 2856
Csp6I GTAC 6 cut(s) 509, 618, 634, 992, 1826, 2645
CspAI ACCGGT 1 cut(s) 572
CviQI GTAC 6 cut(s) 509, 618, 634, 992, 1826, 2645
DraI TTTAAA 2 cut(s) 987, 1047
DrdI GACNNNNNNGTC 1 cut(s) 111
DriI GACNNNNNGTC 1 cut(s) 201
DseDI GACNNNNNNGTC 1 cut(s) 111
EaeI YGGCCR 3 cut(s) 824, 1009, 1021
EagI CGGCCG 1 cut(s) 1021
Eam1104I CTCTTC 4 cut(s) 735, 975, 1167, 1593
Eam1105I GACNNNNNGTC 1 cut(s) 201
EarI CTCTTC 4 cut(s) 735, 975, 1167, 1593
EciI GGCGGA 1 cut(s) 259
Ecl136II GAGCTC 2 cut(s) 553, 2779
EclXI CGGCCG 1 cut(s) 1021
Eco130I CCWWGG 3 cut(s) 810, 934, 3138
Eco24I GRGCYC 4 cut(s) 555, 699, 1740, 2781
Eco31I GGTCTC 1 cut(s) 152
Eco32I GATATC 1 cut(s) 3127
Eco47I GGWCC 3 cut(s) 788, 1263, 2838
Eco52I CGGCCG 1 cut(s) 1021
Eco53kI GAGCTC 2 cut(s) 553, 2779
Eco57I CTGAAG 6 cut(s) 94, 381, 1907, 2037, 2190, 2433
Eco81I CCTNAGG 1 cut(s) 2885
Eco88I CYCGRG 2 cut(s) 55, 1964
Eco91I GGTNACC 1 cut(s) 1544
EcoICRI GAGCTC 2 cut(s) 553, 2779
EcoO109I RGGNCCY 1 cut(s) 1805
EcoO65I GGTNACC 1 cut(s) 1544
EcoRII CCWGG 6 cut(s) 30, 176, 625, 1291, 2752, 3069
EcoRV GATATC 1 cut(s) 3127
EcoT14I CCWWGG 3 cut(s) 810, 934, 3138
EcoT22I ATGCAT 1 cut(s) 2512
EcoT38I GRGCYC 4 cut(s) 555, 699, 1740, 2781
ErhI CCWWGG 3 cut(s) 810, 934, 3138
Esp3I CGTCTC 1 cut(s) 2874
FalI AAGNNNNNCTT 4 cut(s) 1044, 1076, 2958, 2990
FaqI GGGAC 6 cut(s) 72, 99, 575, 774, 2255, 2851
FauI CCCGC 4 cut(s) 269, 1280, 2942, 3107
FbaI TGATCA 2 cut(s) 1858, 2707
FblI GTMKAC 5 cut(s) 66, 678, 778, 2580, 2913
FokI GGATG 8 cut(s) 313, 686, 917, 1349, 1350, 2051, 2138, 2428
FriOI GRGCYC 4 cut(s) 555, 699, 1740, 2781
FspBI CTAG 9 cut(s) 222, 441, 1158, 1230, 1449, 1691, 2145, 3149, 3166
GlaI GCGC 3 cut(s) 187, 1241, 2567
GsaI CCCAGC 2 cut(s) 2259, 2653
GsuI CTGGAG 5 cut(s) 53, 703, 1232, 1359, 2961
HaeII RGCGCY 1 cut(s) 2569
HaeIII GGCC 9 cut(s) 54, 260, 826, 922, 1011, 1023, 1056, 1806, 1963
HapII CCGG 6 cut(s) 56, 94, 147, 573, 671, 2782
HgaI GACGC 6 cut(s) 80, 467, 1088, 1122, 2758, 2856
HhaI GCGC 3 cut(s) 188, 1242, 2568
Hin1I GRCGYC 3 cut(s) 72, 2750, 2867
Hin6I GCGC 3 cut(s) 186, 1240, 2566
HinP1I GCGC 3 cut(s) 186, 1240, 2566
HincII GTYRAC 5 cut(s) 67, 457, 2439, 2581, 3032
HindII GTYRAC 5 cut(s) 67, 457, 2439, 2581, 3032
HindIII AAGCTT 2 cut(s) 1607, 1889
HpaII CCGG 6 cut(s) 56, 94, 147, 573, 671, 2782
Hpy99I CGWCG 6 cut(s) 71, 74, 134, 199, 1104, 3125
HpyCH4III ACNGT 6 cut(s) 26, 416, 1665, 2285, 2525, 2811
HpyCH4IV ACGT 4 cut(s) 48, 322, 2464, 2850
HpyF10VI GCNNNNNNNGC 7 cut(s) 919, 1130, 1248, 2216, 2526, 2758, 3020
HpySE526I ACGT 4 cut(s) 48, 322, 2464, 2850
Hsp92I GRCGYC 3 cut(s) 72, 2750, 2867
HspAI GCGC 3 cut(s) 186, 1240, 2566
Kpn2I TCCGGA 1 cut(s) 2781
KpnI GGTACC 1 cut(s) 621
Ksp22I TGATCA 2 cut(s) 1858, 2707
LguI GCTCTTC 2 cut(s) 975, 1167
LmnI GCTCC 9 cut(s) 96, 179, 550, 1036, 1213, 2563, 2776, 2784, 3117
Lsp1109I GCAGC 9 cut(s) 75, 175, 286, 952, 1706, 1753, 1775, 1918, 2714
LweI GCATC 7 cut(s) 696, 940, 987, 1120, 1327, 1867, 2497
MaeI CTAG 9 cut(s) 222, 441, 1158, 1230, 1449, 1691, 2145, 3149, 3166
MaeII ACGT 4 cut(s) 48, 322, 2464, 2850
MaeIII GTNAC 5 cut(s) 26, 398, 422, 956, 1544
MflI RGATCY 1 cut(s) 1456
MhlI GDGCHC 6 cut(s) 555, 699, 1605, 1740, 1971, 2781
MlsI TGGCCA 2 cut(s) 826, 1011
MluNI TGGCCA 2 cut(s) 826, 1011
MlyI GAGTC 5 cut(s) 211, 557, 706, 953, 1740
MmeI TCCRAC 2 cut(s) 1014, 1082
Mox20I TGGCCA 2 cut(s) 826, 1011
Mph1103I ATGCAT 1 cut(s) 2512
MroI TCCGGA 1 cut(s) 2781
MscI TGGCCA 2 cut(s) 826, 1011
MseI TTAA 9 cut(s) 447, 585, 986, 1046, 1719, 1754, 2364, 2553, 2664
MslI CAYNNNNRTG 5 cut(s) 704, 1326, 2283, 2336, 2991
Msp20I TGGCCA 2 cut(s) 826, 1011
MspA1I CMGCKG 3 cut(s) 965, 1766, 2705
MspI CCGG 6 cut(s) 56, 94, 147, 573, 671, 2782
MspR9I CCNGG 9 cut(s) 32, 56, 57, 95, 178, 627, 1293, 2754, 3071
Mva1269I GAATGC 1 cut(s) 2951
MvaI CCWGG 6 cut(s) 32, 178, 627, 1293, 2754, 3071
MvnI CGCG 2 cut(s) 186, 1551
MwoI GCNNNNNNNGC 7 cut(s) 919, 1130, 1248, 2216, 2526, 2758, 3020
NciI CCSGG 3 cut(s) 56, 57, 95
NcoI CCATGG 1 cut(s) 934
NlaIV GGNNCC 4 cut(s) 619, 790, 2813, 2839
NmeAIII GCCGAG 2 cut(s) 999, 1049
NmuCI GTSAC 3 cut(s) 398, 422, 956
NsiI ATGCAT 1 cut(s) 2512
OliI CACNNNNGTG 1 cut(s) 2991
PagI TCATGA 1 cut(s) 1855
PciSI GCTCTTC 2 cut(s) 975, 1167
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 1 cut(s) 2951
PfeI GAWTC 8 cut(s) 40, 1435, 2057, 2063, 2075, 2165, 2427, 2797
PfoI TCCNGGA 2 cut(s) 93, 1291
PinAI ACCGGT 1 cut(s) 572
PleI GAGTC 5 cut(s) 210, 557, 706, 953, 1740
PpsI GAGTC 5 cut(s) 210, 557, 706, 953, 1740
PshAI GACNNNNGTC 2 cut(s) 661, 1836
PshBI ATTAAT 3 cut(s) 1719, 2553, 2664
Psp124BI GAGCTC 2 cut(s) 555, 2781
Psp1406I AACGTT 1 cut(s) 2850
Psp6I CCWGG 6 cut(s) 30, 176, 625, 1291, 2752, 3069
PspEI GGTNACC 1 cut(s) 1544
PspFI CCCAGC 2 cut(s) 2255, 2649
PspGI CCWGG 6 cut(s) 30, 176, 625, 1291, 2752, 3069
PspN4I GGNNCC 4 cut(s) 619, 790, 2813, 2839
PspPI GGNCC 7 cut(s) 53, 259, 788, 1263, 1805, 1962, 2838
PsrI GAACNNNNNNTAC 2 cut(s) 3035, 3067
PstI CTGCAG 1 cut(s) 2704
PstNI CAGNNNCTG 1 cut(s) 953
PsuI RGATCY 1 cut(s) 1456
PvuII CAGCTG 3 cut(s) 965, 1766, 2705
RsaI GTAC 6 cut(s) 510, 619, 635, 993, 1827, 2646
RsaNI GTAC 6 cut(s) 509, 618, 634, 992, 1826, 2645
RseI CAYNNNNRTG 5 cut(s) 704, 1326, 2283, 2336, 2991
SacI GAGCTC 2 cut(s) 555, 2781
SalI GTCGAC 2 cut(s) 65, 2579
SapI GCTCTTC 2 cut(s) 975, 1167
SaqAI TTAA 9 cut(s) 447, 585, 986, 1046, 1719, 1754, 2364, 2553, 2664
Sau96I GGNCC 7 cut(s) 53, 259, 788, 1263, 1805, 1962, 2838
SchI GAGTC 5 cut(s) 211, 557, 706, 953, 1740
ScrFI CCNGG 9 cut(s) 32, 56, 57, 95, 178, 627, 1293, 2754, 3071
SduI GDGCHC 6 cut(s) 555, 699, 1605, 1740, 1971, 2781
SfaNI GCATC 7 cut(s) 696, 940, 987, 1120, 1327, 1867, 2497
SfcI CTRYAG 2 cut(s) 2421, 2700
SgrAI CRCCGGYG 1 cut(s) 572
SinI GGWCC 3 cut(s) 788, 1263, 2838
SmaI CCCGGG 1 cut(s) 57
SmiMI CAYNNNNRTG 5 cut(s) 704, 1326, 2283, 2336, 2991
SmlI CTYRAG 5 cut(s) 278, 1604, 2080, 2877, 3158
SmoI CTYRAG 5 cut(s) 278, 1604, 2080, 2877, 3158
SpeI ACTAGT 1 cut(s) 2144
SspI AATATT 1 cut(s) 2383
SspMI CTAG 9 cut(s) 222, 441, 1158, 1230, 1449, 1691, 2145, 3149, 3166
SstI GAGCTC 2 cut(s) 555, 2781
StyD4I CCNGG 9 cut(s) 30, 54, 55, 93, 176, 625, 1291, 2752, 3069
StyI CCWWGG 3 cut(s) 810, 934, 3138
TaaI ACNGT 6 cut(s) 26, 416, 1665, 2285, 2525, 2811
TaiI ACGT 4 cut(s) 51, 325, 2467, 2853
TaqI TCGA 7 cut(s) 66, 132, 153, 2237, 2457, 2580, 2921
TaqII GACCGA 3 cut(s) 176, 545, 776
TatI WGTACW 1 cut(s) 508
TauI GCSGC 2 cut(s) 194, 315
TfiI GAWTC 8 cut(s) 40, 1435, 2057, 2063, 2075, 2165, 2427, 2797
Tru1I TTAA 9 cut(s) 447, 585, 986, 1046, 1719, 1754, 2364, 2553, 2664
Tru9I TTAA 9 cut(s) 447, 585, 986, 1046, 1719, 1754, 2364, 2553, 2664
TscAI CASTG 8 cut(s) 763, 1605, 1976, 2005, 2290, 2530, 2536, 3109
TseFI GTSAC 3 cut(s) 398, 422, 956
TseI GCWGC 9 cut(s) 88, 188, 274, 965, 1694, 1763, 1766, 1906, 2702
Tsp45I GTSAC 3 cut(s) 398, 422, 956
TspDTI ATGAA 8 cut(s) 512, 1371, 1578, 1705, 1720, 2382, 2419, 2457
TspGWI ACGGA 3 cut(s) 313, 442, 3119
TspMI CCCGGG 1 cut(s) 55
TspRI CASTG 8 cut(s) 763, 1605, 1976, 2005, 2290, 2530, 2536, 3109
VpaK11BI GGWCC 3 cut(s) 788, 1263, 2838
VspI ATTAAT 3 cut(s) 1719, 2553, 2664
XapI RAATTY 2 cut(s) 232, 839
XcmI CCANNNNNNNNNTGG 2 cut(s) 1273, 2285
XmaI CCCGGG 1 cut(s) 55
XmiI GTMKAC 5 cut(s) 66, 678, 778, 2580, 2913
XspI CTAG 9 cut(s) 222, 441, 1158, 1230, 1449, 1691, 2145, 3149, 3166
Zsp2I ATGCAT 1 cut(s) 2512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.