MD15G1206600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013586
Physical Location & Seq
Reverse (-)
16398349 .. 16400702
2354 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1206600.v1.1.491

Sequence Viewer

Length: 261 bp
ATGCCGGAGCCACCGCTGCCGTCATTACCGGCGAAGGAACTACCAATCAACCGCTACAAGTTCATTTGGCGAGTCCTCATGATCTCCAATCTTGTTCTCGGAGCTTACATGTTTATTGGCGTCAAGAAGCGAGATCCTGGCACATTGAAACGGAAATCAGAAACAGGCGTCAAAAATCACAAACCTGTAGTAGAAGTGCCCTCTGTTCCTGCAACAACTCCTACAACAACCAGTACAACTTCTGAGACATGGGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.62

Weight (kDa)

9.82

Isoelectric Point (pI)

55.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 14, 52
AclWI GGATC 1 cut(s) 128
AcyI GRCGYC 2 cut(s) 120, 168
AfaI GTAC 1 cut(s) 235
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 3
BceAI ACGGC 1 cut(s) 4
BciT130I CCWGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 186
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 138
BsaHI GRCGYC 2 cut(s) 120, 168
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 201
BseXI GCAGC 1 cut(s) 3
BsiSI CCGG 2 cut(s) 5, 29
BsmAI GTCTC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 2 cut(s) 81, 133
BspACI CCGC 2 cut(s) 14, 52
BspCNI CTCAG 1 cut(s) 235
BspHI TCATGA 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 1 cut(s) 231
BssAI RCCGGY 1 cut(s) 28
BssMI GATC 2 cut(s) 81, 133
BssNI GRCGYC 2 cut(s) 120, 168
Bst2UI CCWGG 1 cut(s) 138
BstACI GRCGYC 2 cut(s) 120, 168
BstDEI CTNAG 1 cut(s) 243
BstKTI GATC 2 cut(s) 84, 136
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 2 cut(s) 81, 133
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 136
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 3
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
CciI TCATGA 1 cut(s) 78
Cfr10I RCCGGY 1 cut(s) 28
CseI GACGC 2 cut(s) 109, 157
Csp6I GTAC 1 cut(s) 234
CviAII CATG 3 cut(s) 79, 109, 249
CviJI RGCY 2 cut(s) 10, 104
CviKI_1 RGCY 2 cut(s) 10, 104
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 83, 135
DpnII GATC 2 cut(s) 81, 133
EcoRII CCWGG 1 cut(s) 136
FaeI CATG 3 cut(s) 82, 112, 252
FaiI YATR 4 cut(s) 80, 110, 250, 257
FatI CATG 3 cut(s) 78, 108, 248
Fnu4HI GCNGC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 17
GluI GCNGC 1 cut(s) 17
HapII CCGG 2 cut(s) 5, 29
HgaI GACGC 2 cut(s) 109, 157
Hin1I GRCGYC 2 cut(s) 120, 168
Hin1II CATG 3 cut(s) 82, 112, 252
HinfI GANTC 1 cut(s) 72
HpaII CCGG 2 cut(s) 5, 29
Hpy188I TCNGA 3 cut(s) 101, 160, 244
Hpy188III TCNNGA 2 cut(s) 79, 124
HpyAV CCTTC 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 1 cut(s) 243
Hsp92I GRCGYC 2 cut(s) 120, 168
Hsp92II CATG 3 cut(s) 82, 112, 252
Kzo9I GATC 2 cut(s) 81, 133
LmnI GCTCC 2 cut(s) 7, 101
LpnPI CCDG 8 cut(s) 18, 42, 123, 150, 150, 198, 222, 244
Lsp1109I GCAGC 1 cut(s) 3
MalI GATC 2 cut(s) 83, 135
MboI GATC 2 cut(s) 81, 133
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 201
MlyI GAGTC 1 cut(s) 81
MnlI CCTC 2 cut(s) 86, 211
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 2 cut(s) 5, 29
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 16
NdeII GATC 2 cut(s) 81, 133
NlaIII CATG 3 cut(s) 82, 112, 252
NlaIV GGNNCC 1 cut(s) 9
NspI RCATGY 1 cut(s) 112
PagI TCATGA 1 cut(s) 78
PciI ACATGT 1 cut(s) 108
PkrI GCNGC 1 cut(s) 18
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PscI ACATGT 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 9
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 2 cut(s) 81, 133
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 201
SetI ASST 2 cut(s) 106, 187
SfcI CTRYAG 1 cut(s) 186
SsiI CCGC 2 cut(s) 14, 52
StyD4I CCNGG 1 cut(s) 136
TatI WGTACW 1 cut(s) 233
TseI GCWGC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 52
TspGWI ACGGA 1 cut(s) 166
XceI RCATGY 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.