pycom15g18300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013586
Physical Location & Seq
Reverse (-)
12967111 .. 12969306
2196 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g18300.3

Sequence Viewer

Length: 405 bp
ATGGCCAACTTAGGTTTTCTGGAACATTGTGCTTTCATGGACTTATTACATTTGTCAAAGCGTGCCCCGTCTAAACTAACGACTGCAAGGGGACTTCGTATATTACTTGCGTTCTGCACGCAGTCAAACACCGAGAGAGAGATGCCGGAGCCATCGCCGCCGCCGTCCTTACCGGCGAAGGAACTACCAATCAACCGCTACAAGTTCATTTGGCGAGTCCTCATGATCTCCAATTTTGTTCTCGGAGCTTACATGTTTATTGGCATCAAGAAGCGAGATCCTGGCACATTGAAACGGAAATCAGAAACAGGCGTCAAAAATCACAAACCTGTGGTAGAAGTGCCCTCTGTTCCTACAACAACTCCTACAAAAACCAGTACAACTTCTGAGACATGGGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.09

Weight (kDa)

9.83

Isoelectric Point (pI)

53.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 158, 161, 196
AclWI GGATC 1 cut(s) 272
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 1 cut(s) 379
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 1 cut(s) 292
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 1 cut(s) 272
AoxI GGCC 1 cut(s) 3
BaeGI GKGCMC 2 cut(s) 67, 345
BalI TGGCCA 1 cut(s) 5
BccI CCATC 1 cut(s) 160
BceAI ACGGC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 383
BisI GCNGC 2 cut(s) 158, 161
BlsI GCNGC 2 cut(s) 159, 162
Bme1390I CCNGG 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 2 cut(s) 132, 273
BsaHI GRCGYC 1 cut(s) 312
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 375
BseBI CCWGG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 1 cut(s) 375
BseSI GKGCMC 2 cut(s) 67, 345
BsgI GTGCAG 1 cut(s) 100
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 146, 173
BslFI GGGAC 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 105
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 67, 345
Bsp143I GATC 2 cut(s) 225, 277
BspACI CCGC 3 cut(s) 158, 161, 196
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 379
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 1 cut(s) 375
BssAI RCCGGY 1 cut(s) 172
BssMI GATC 2 cut(s) 225, 277
BssNI GRCGYC 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 312
BstC8I GCNNGC 2 cut(s) 63, 119
BstDEI CTNAG 2 cut(s) 10, 387
BstKTI GATC 2 cut(s) 228, 280
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 2 cut(s) 225, 277
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 280
BstSLI GKGCMC 2 cut(s) 67, 345
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 138
Cac8I GCNNGC 2 cut(s) 63, 119
CciI TCATGA 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 172
CseI GACGC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 378
CviAII CATG 4 cut(s) 37, 223, 253, 393
CviJI RGCY 3 cut(s) 5, 151, 248
CviKI_1 RGCY 3 cut(s) 5, 151, 248
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 2 cut(s) 10, 387
DpnI GATC 2 cut(s) 227, 279
DpnII GATC 2 cut(s) 225, 277
EaeI YGGCCR 1 cut(s) 3
EcoRII CCWGG 1 cut(s) 280
FaeI CATG 4 cut(s) 40, 226, 256, 396
FaiI YATR 6 cut(s) 38, 101, 224, 254, 394, 401
FaqI GGGAC 1 cut(s) 105
FatI CATG 4 cut(s) 36, 222, 252, 392
Fnu4HI GCNGC 2 cut(s) 158, 161
Fsp4HI GCNGC 2 cut(s) 158, 161
GluI GCNGC 2 cut(s) 158, 161
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 146, 173
HgaI GACGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 4 cut(s) 40, 226, 256, 396
HinfI GANTC 1 cut(s) 216
HpaII CCGG 2 cut(s) 146, 173
Hpy188I TCNGA 3 cut(s) 245, 304, 388
Hpy188III TCNNGA 3 cut(s) 20, 223, 268
HpyAV CCTTC 1 cut(s) 172
HpyCH4V TGCA 2 cut(s) 86, 117
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 2 cut(s) 10, 387
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 4 cut(s) 40, 226, 256, 396
Kzo9I GATC 2 cut(s) 225, 277
LmnI GCTCC 2 cut(s) 148, 245
LpnPI CCDG 8 cut(s) 5, 159, 186, 267, 294, 294, 342, 388
LweI GCATC 2 cut(s) 132, 273
MalI GATC 2 cut(s) 227, 279
MboI GATC 2 cut(s) 225, 277
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 2 cut(s) 67, 345
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 232
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 225
MnlI CCTC 2 cut(s) 230, 355
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 146, 173
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 157
NdeII GATC 2 cut(s) 225, 277
NlaIII CATG 4 cut(s) 40, 226, 256, 396
NlaIV GGNNCC 1 cut(s) 150
NspI RCATGY 1 cut(s) 256
PagI TCATGA 1 cut(s) 222
PciI ACATGT 1 cut(s) 252
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PkrI GCNGC 2 cut(s) 159, 162
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PscI ACATGT 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 150
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
SatI GCNGC 2 cut(s) 158, 161
Sau3AI GATC 2 cut(s) 225, 277
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 2 cut(s) 67, 345
SetI ASST 3 cut(s) 16, 250, 331
SfaNI GCATC 2 cut(s) 132, 273
Sse9I AATT 1 cut(s) 232
SsiI CCGC 3 cut(s) 158, 161, 196
StyD4I CCNGG 1 cut(s) 280
TasI AATT 1 cut(s) 232
TatI WGTACW 1 cut(s) 377
TauI GCSGC 2 cut(s) 160, 163
TspDTI ATGAA 2 cut(s) 25, 196
TspGWI ACGGA 1 cut(s) 310
XceI RCATGY 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.