isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g07380 |
| malus_domestica | MD02G1078600.v1.1 MD15G1206600.v1.1 |
| prunus_persica | Prupe.7G210200_v2.0.a1 |
| pyrus_communis | pycom15g18300 |
| rosa_chinensis | RchiOBHm_Chr2g0093261 |
| rosa_laevigata | RLG00000016384 |
| rosa_roxburghii | Rroxscaffold_2G00148330 Rroxscaffold_3G00245540 |
| rosa_rugosa | Rorug02G0034000 |
| rosa_samantha | Rh2AG080300 Rh2BG081300 Rh2CG083700 Rh2DG079200 Rh3AG307000 Rh3DG347100 |
| rosa_wichuraiana | Rw2G006670 Rw7G036520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 89 |
| AcsI | RAATTY | 1 cut(s) | 13 |
| AfeI | AGCGCT | 1 cut(s) | 119 |
| AflIII | ACRYGT | 1 cut(s) | 174 |
| AgsI | TTSAA | 3 cut(s) | 19, 124, 266 |
| AluBI | AGCT | 3 cut(s) | 227, 257, 290 |
| AluI | AGCT | 3 cut(s) | 227, 257, 290 |
| Alw26I | GTCTC | 2 cut(s) | 192, 314 |
| Aor51HI | AGCGCT | 1 cut(s) | 119 |
| ApoI | RAATTY | 1 cut(s) | 13 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 313 |
| AspLEI | GCGC | 1 cut(s) | 120 |
| BaeGI | GKGCMC | 1 cut(s) | 276 |
| BcoDI | GTCTC | 2 cut(s) | 192, 314 |
| BfmI | CTRYAG | 1 cut(s) | 258 |
| BfoI | RGCGCY | 1 cut(s) | 121 |
| BmiI | GGNNCC | 1 cut(s) | 93 |
| BmrI | ACTGGG | 1 cut(s) | 31 |
| BmuI | ACTGGG | 1 cut(s) | 31 |
| BpmI | CTGGAG | 1 cut(s) | 270 |
| Bpu10I | CCTNAGC | 1 cut(s) | 228 |
| Bse1I | ACTGG | 1 cut(s) | 26 |
| BseMII | CTCAG | 1 cut(s) | 309 |
| BseNI | ACTGG | 1 cut(s) | 26 |
| BseRI | GAGGAG | 3 cut(s) | 273, 282, 285 |
| BseSI | GKGCMC | 1 cut(s) | 276 |
| BsmAI | GTCTC | 2 cut(s) | 192, 314 |
| Bsp1286I | GDGCHC | 1 cut(s) | 276 |
| Bsp143I | GATC | 1 cut(s) | 147 |
| BspACI | CCGC | 1 cut(s) | 89 |
| BspCNI | CTCAG | 1 cut(s) | 310 |
| BspHI | TCATGA | 1 cut(s) | 144 |
| BspLI | GGNNCC | 1 cut(s) | 93 |
| BsrI | ACTGG | 1 cut(s) | 26 |
| BssMI | GATC | 1 cut(s) | 147 |
| Bst4CI | ACNGT | 1 cut(s) | 211 |
| Bst6I | CTCTTC | 2 cut(s) | 188, 283 |
| BstDEI | CTNAG | 3 cut(s) | 189, 228, 318 |
| BstH2I | RGCGCY | 1 cut(s) | 121 |
| BstHHI | GCGC | 1 cut(s) | 120 |
| BstKTI | GATC | 1 cut(s) | 150 |
| BstMAI | GTCTC | 2 cut(s) | 192, 314 |
| BstMBI | GATC | 1 cut(s) | 147 |
| BstNSI | RCATGY | 1 cut(s) | 178 |
| BstSFI | CTRYAG | 1 cut(s) | 258 |
| BstSLI | GKGCMC | 1 cut(s) | 276 |
| CciI | TCATGA | 1 cut(s) | 144 |
| CfoI | GCGC | 1 cut(s) | 120 |
| CviAII | CATG | 5 cut(s) | 30, 85, 145, 175, 324 |
| CviJI | RGCY | 5 cut(s) | 94, 188, 227, 257, 290 |
| CviKI_1 | RGCY | 5 cut(s) | 94, 188, 227, 257, 290 |
| DdeI | CTNAG | 3 cut(s) | 189, 228, 318 |
| DpnI | GATC | 1 cut(s) | 149 |
| DpnII | GATC | 1 cut(s) | 147 |
| Eam1104I | CTCTTC | 2 cut(s) | 188, 283 |
| EarI | CTCTTC | 2 cut(s) | 188, 283 |
| EciI | GGCGGA | 1 cut(s) | 104 |
| Eco47III | AGCGCT | 1 cut(s) | 119 |
| FaeI | CATG | 5 cut(s) | 33, 88, 148, 178, 327 |
| FaiI | YATR | 6 cut(s) | 31, 86, 146, 176, 203, 325 |
| FatI | CATG | 5 cut(s) | 29, 84, 144, 174, 323 |
| GlaI | GCGC | 1 cut(s) | 119 |
| GsuI | CTGGAG | 1 cut(s) | 270 |
| HaeII | RGCGCY | 1 cut(s) | 121 |
| HhaI | GCGC | 1 cut(s) | 120 |
| Hin1II | CATG | 5 cut(s) | 33, 88, 148, 178, 327 |
| Hin6I | GCGC | 1 cut(s) | 118 |
| HinP1I | GCGC | 1 cut(s) | 118 |
| HinfI | GANTC | 2 cut(s) | 26, 138 |
| Hpy188I | TCNGA | 2 cut(s) | 167, 319 |
| Hpy188III | TCNNGA | 1 cut(s) | 145 |
| HpyCH4III | ACNGT | 1 cut(s) | 211 |
| HpyF3I | CTNAG | 3 cut(s) | 189, 228, 318 |
| Hsp92II | CATG | 5 cut(s) | 33, 88, 148, 178, 327 |
| HspAI | GCGC | 1 cut(s) | 118 |
| Kzo9I | GATC | 1 cut(s) | 147 |
| LmnI | GCTCC | 2 cut(s) | 91, 295 |
| LpnPI | CCDG | 3 cut(s) | 7, 70, 300 |
| MaeIII | GTNAC | 1 cut(s) | 170 |
| MalI | GATC | 1 cut(s) | 149 |
| MboI | GATC | 1 cut(s) | 147 |
| MboII | GAAGA | 5 cut(s) | 30, 205, 232, 270, 278 |
| MhlI | GDGCHC | 1 cut(s) | 276 |
| MluCI | AATT | 1 cut(s) | 13 |
| MlyI | GAGTC | 1 cut(s) | 147 |
| MnlI | CCTC | 6 cut(s) | 152, 161, 286, 294, 303, 306 |
| MseI | TTAA | 1 cut(s) | 243 |
| NdeII | GATC | 1 cut(s) | 147 |
| NlaIII | CATG | 5 cut(s) | 33, 88, 148, 178, 327 |
| NlaIV | GGNNCC | 1 cut(s) | 93 |
| NspI | RCATGY | 1 cut(s) | 178 |
| PagI | TCATGA | 1 cut(s) | 144 |
| PciI | ACATGT | 1 cut(s) | 174 |
| PfeI | GAWTC | 1 cut(s) | 26 |
| PleI | GAGTC | 1 cut(s) | 146 |
| PpsI | GAGTC | 1 cut(s) | 146 |
| PscI | ACATGT | 1 cut(s) | 174 |
| PspN4I | GGNNCC | 1 cut(s) | 93 |
| SaqAI | TTAA | 1 cut(s) | 243 |
| Sau3AI | GATC | 1 cut(s) | 147 |
| SchI | GAGTC | 1 cut(s) | 147 |
| SduI | GDGCHC | 1 cut(s) | 276 |
| SetI | ASST | 5 cut(s) | 73, 172, 229, 259, 292 |
| SfcI | CTRYAG | 1 cut(s) | 258 |
| Sse9I | AATT | 1 cut(s) | 13 |
| SsiI | CCGC | 1 cut(s) | 89 |
| TaaI | ACNGT | 1 cut(s) | 211 |
| TasI | AATT | 1 cut(s) | 13 |
| TfiI | GAWTC | 1 cut(s) | 26 |
| Tru1I | TTAA | 1 cut(s) | 243 |
| Tru9I | TTAA | 1 cut(s) | 243 |
| TspDTI | ATGAA | 3 cut(s) | 17, 18, 118 |
| XapI | RAATTY | 1 cut(s) | 13 |
| XceI | RCATGY | 1 cut(s) | 178 |