Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0021147

Physical Location & Seq

Genomic Coordinates Reverse (-)

17577121 .. 17577447

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1218300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAGGTGGCGAAAAAAGAAGAATCATCATATCCCAGAGACAGCTCACGCTTTGCTTATTTGTGCATATGCTCCTAAACGCTTATGGGGTCTCCAACCCCAAAATATAAAACTTCCACCAGCTCCCAAACCATGGGCTATAATTGGCAACCTCAACCTCATTGGCCCTCTGCCTCAACAATCCCTTCACAAATTGTCCCAAACACATAGACCTATAATGAAACTTAAGTTCGGCTCGTACCCAGTTGTAATTGCCTCATCTCCAGAAATGGCAAGACAATTCTTAAGGACACATGATCACATCTTTGCTCTAGACCTGAAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

109

Amino Acids

12.49

Weight (kDa)

10.64

Isoelectric Point (pI)

70.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	39 - 103	5.5e-09	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021147)

Species	Orthologous Gene IDs
malus_domestica	MD15G1218300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0145871
rosa_laevigata	RLG00000017227
rosa_samantha	Rh2BG169500 Rh2DG469600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	132
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	132
AflII	CTTAAG	2 cut(s)	224, 283
AluBI	AGCT	2 cut(s)	44, 122
AluI	AGCT	2 cut(s)	44, 122
Alw26I	GTCTC	2 cut(s)	32, 95
AoxI	GGCC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	164
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	2 cut(s)	32, 95
BfaI	CTAG	1 cut(s)	311
BfrI	CTTAAG	2 cut(s)	224, 283
BmgT120I	GGNCC	1 cut(s)	164
BmrI	ACTGGG	1 cut(s)	236
BmuI	ACTGGG	1 cut(s)	236
BpmI	CTGGAG	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	2 cut(s)	32, 95
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	165
Bso31I	GGTCTC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	295
Bsp19I	CCATGG	1 cut(s)	131
BspANI	GGCC	1 cut(s)	165
BspTI	CTTAAG	2 cut(s)	224, 283
BspTNI	GGTCTC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	131
BstAFI	CTTAAG	2 cut(s)	224, 283
BstDSI	CCRYGG	1 cut(s)	131
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	2 cut(s)	32, 95
BstMBI	GATC	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	2 cut(s)	132, 293
CviJI	RGCY	5 cut(s)	44, 122, 137, 165, 234
CviKI_1	RGCY	5 cut(s)	44, 122, 137, 165, 234
CviQI	GTAC	1 cut(s)	238
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	131
Eco31I	GGTCTC	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	2 cut(s)	135, 296
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	2 cut(s)	131, 292
FauNDI	CATATG	1 cut(s)	67
FbaI	TGATCA	1 cut(s)	295
FspBI	CTAG	1 cut(s)	311
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	135, 296
HinfI	GANTC	1 cut(s)	22
Hpy188III	TCNNGA	2 cut(s)	263, 311
HpyAV	CCTTC	1 cut(s)	194
HpyCH4V	TGCA	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	135, 296
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	2 cut(s)	76, 127
LpnPI	CCDG	4 cut(s)	48, 132, 255, 276
MaeI	CTAG	1 cut(s)	311
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	1 cut(s)	31
MluCI	AATT	4 cut(s)	141, 191, 249, 278
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	5 cut(s)	161, 167, 177, 183, 265
MseI	TTAA	2 cut(s)	225, 284
MspCI	CTTAAG	2 cut(s)	224, 283
NcoI	CCATGG	1 cut(s)	131
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	2 cut(s)	135, 296
PfeI	GAWTC	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	164
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SaqAI	TTAA	2 cut(s)	225, 284
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	1 cut(s)	164
SetI	ASST	7 cut(s)	8, 46, 124, 153, 159, 214, 318
SmlI	CTYRAG	2 cut(s)	224, 283
SmoI	CTYRAG	2 cut(s)	224, 283
Sse9I	AATT	4 cut(s)	141, 191, 249, 278
SspMI	CTAG	1 cut(s)	311
StyI	CCWWGG	1 cut(s)	131
TasI	AATT	4 cut(s)	141, 191, 249, 278
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	2 cut(s)	225, 284
Tru9I	TTAA	2 cut(s)	225, 284
TspDTI	ATGAA	1 cut(s)	233
Van91I	CCANNNNNTGG	1 cut(s)	132
Vha464I	CTTAAG	2 cut(s)	224, 283
XbaI	TCTAGA	1 cut(s)	310
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.