Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0021147

Physical Location & Seq

Genomic Coordinates Forward (+)

14953367 .. 14954314

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG169500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAGCTGGTTTCCACTTGGCCCGTTCTAACCTTGGTCTGTCTAGCAACTCTAACCCTTCTCTCCAAACTTTTCTTTTCCCAAAGCCGAAAACTGAAATCTCCACCCGGTCCTAAACCATGGCCTATTATCGGCAACCTAAACCTCATGGGTCCAATCCCTCACCAAAGCCTTCACAAACTCTCCCAAACTTATGGACCAATAATGCAGCTCAAGTTCGGATCCCGCCCAGTTGTCATTGCTTCCTCTGCAGAAATGGCAAAGCAATTTCTCAAAACACATGATCATGTCTTTGCCTCTAGACCCCAAACTGCAGCTGGCAAGTACCTCACTTACAACTACCTCGACGTCACTTGGGCGCCTTACGGTGACTATTGGCGCCAAGGCCGCAAGATTTTCATCACCGAGCTCTTCAGCTCGAAAAGACTGGAGTCTTTCGAGTACATTCGAGTTGAAGAGATACGCGCTTTTGTATCGCGCCTCTGTGCCTTGTCAGGGAAGCCGGTTATGCTTAAAGAGCATATCTCTCGCCTAATGCTAAGTACAGTGAGTAGGATTGTGTTGGGAAAGGATTACTTCAGCCAAACTGATATTCAGACCTCGGTTGTGACGCTCAAAATGTTTCAGGACATGTTAGATGAGTTGGTGTCGCTTAGCGGGGTTTTGAATATAGGGGACTGGATACCATGGCTGGAGTTTTTGGACTTGCAAGGGTACGTGAAGCAAATGAAGGGATTGAAGAAAAAACTGGACAGCTTTCATGATTATATTCTGGATGAACACAAGGCAAAGATGGGAGGAGTGCAGGATTTTGTGCCGAAGGACATGGTGGACTTATTGTTGAAGCTGGTTGATAATCCGGATCTTGAAGTTAGGCTCACACTAGACGGTGTCAAGGGATTCACCCAGGTAGCATGTGCGCGCTATAGTATGGAAGTAGTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

315

Amino Acids

35.92

Weight (kDa)

9.13

Isoelectric Point (pI)

32.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	35 - 284	1.8e-33	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021147)

Species	Orthologous Gene IDs
malus_domestica	MD15G1218300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0145871
rosa_laevigata	RLG00000017227
rosa_samantha	Rh2BG169500 Rh2DG469600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	351
AccB1I	GGYRCC	2 cut(s)	358, 378
AccII	CGCG	3 cut(s)	465, 478, 922
AccIII	TCCGGA	1 cut(s)	859
AciI	CCGC	3 cut(s)	226, 388, 657
AclWI	GGATC	3 cut(s)	216, 229, 870
AcuI	CTGAAG	2 cut(s)	397, 562
AcyI	GRCGYC	3 cut(s)	348, 359, 379
AfaI	GTAC	4 cut(s)	326, 443, 544, 716
AfiI	CCNNNNNNNGG	2 cut(s)	131, 495
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	5 cut(s)	455, 667, 739, 844, 869
AjnI	CCWGG	1 cut(s)	906
AjuI	GAANNNNNNNTTGG	2 cut(s)	576, 608
AluBI	AGCT	7 cut(s)	7, 211, 317, 409, 417, 756, 847
AluI	AGCT	7 cut(s)	7, 211, 317, 409, 417, 756, 847
Alw21I	GWGCWC	1 cut(s)	411
AlwI	GGATC	3 cut(s)	216, 229, 870
Aor13HI	TCCGGA	1 cut(s)	859
AoxI	GGCC	3 cut(s)	20, 122, 385
ApeKI	GCWGC	2 cut(s)	208, 314
AspLEI	GCGC	6 cut(s)	361, 381, 467, 480, 922, 924
AspS9I	GGNCC	4 cut(s)	21, 110, 152, 197
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	4 cut(s)	155, 380, 394, 895
AvaII	GGWCC	3 cut(s)	110, 152, 197
BamHI	GGATCC	1 cut(s)	221
BanI	GGYRCC	2 cut(s)	358, 378
BanII	GRGCYC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	2 cut(s)	220, 326
BccI	CCATC	1 cut(s)	787
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BciT130I	CCWGG	1 cut(s)	908
BciVI	GTATCC	1 cut(s)	675
BclI	TGATCA	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	108
BfaI	CTAG	3 cut(s)	44, 300, 884
BfmI	CTRYAG	3 cut(s)	249, 312, 925
BfoI	RGCGCY	2 cut(s)	362, 382
BfuI	GTATCC	1 cut(s)	675
BisI	GCNGC	3 cut(s)	209, 315, 388
BlpI	GCTNAGC	1 cut(s)	653
BlsI	GCNGC	3 cut(s)	210, 316, 389
Bme1390I	CCNGG	2 cut(s)	108, 908
Bme18I	GGWCC	3 cut(s)	110, 152, 197
BmgT120I	GGNCC	4 cut(s)	21, 110, 152, 197
BmiI	GGNNCC	4 cut(s)	153, 223, 360, 380
BmrFI	CCNGG	2 cut(s)	108, 908
BmrI	ACTGGG	1 cut(s)	224
BmuI	ACTGGG	1 cut(s)	224
BoxI	GACNNNNGTC	1 cut(s)	430
BplI	GAGNNNNNCTC	2 cut(s)	509, 541
BpmI	CTGGAG	2 cut(s)	449, 713
Bpu1102I	GCTNAGC	1 cut(s)	653
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	718
BsaBI	GATNNNNATC	1 cut(s)	398
BsaHI	GRCGYC	3 cut(s)	348, 359, 379
BsaJI	CCNNGG	6 cut(s)	33, 119, 382, 600, 686, 906
BsaWI	WCCGGW	1 cut(s)	859
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 495
Bse118I	RCCGGY	1 cut(s)	502
Bse1I	ACTGG	4 cut(s)	230, 432, 683, 753
Bse3DI	GCAATG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	398
BseAI	TCCGGA	1 cut(s)	859
BseBI	CCWGG	1 cut(s)	908
BseDI	CCNNGG	6 cut(s)	33, 119, 382, 600, 686, 906
BseGI	GGATG	1 cut(s)	781
BseJI	GATNNNNATC	1 cut(s)	398
BseLI	CCNNNNNNNGG	2 cut(s)	131, 495
BseMI	GCAATG	1 cut(s)	237
BseNI	ACTGG	4 cut(s)	230, 432, 683, 753
BsePI	GCGCGC	1 cut(s)	920
BseRI	GAGGAG	1 cut(s)	813
BseXI	GCAGC	2 cut(s)	220, 326
BsgI	GTGCAG	1 cut(s)	824
Bsh1236I	CGCG	3 cut(s)	465, 478, 922
BshFI	GGCC	3 cut(s)	22, 124, 387
BshNI	GGYRCC	2 cut(s)	358, 378
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	3 cut(s)	108, 503, 860
BslFI	GGGAC	1 cut(s)	689
BslI	CCNNNNNNNGG	2 cut(s)	131, 495
BsmFI	GGGAC	1 cut(s)	689
BsnI	GGCC	3 cut(s)	22, 124, 387
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp13I	TCCGGA	1 cut(s)	859
Bsp143I	GATC	3 cut(s)	221, 283, 862
Bsp1720I	GCTNAGC	1 cut(s)	653
Bsp19I	CCATGG	2 cut(s)	119, 686
BspACI	CCGC	3 cut(s)	226, 388, 657
BspANI	GGCC	3 cut(s)	22, 124, 387
BspEI	TCCGGA	1 cut(s)	859
BspFNI	CGCG	3 cut(s)	465, 478, 922
BspHI	TCATGA	1 cut(s)	760
BspLI	GGNNCC	4 cut(s)	153, 223, 360, 380
BspMAI	CTGCAG	2 cut(s)	253, 316
BspPI	GGATC	3 cut(s)	216, 229, 870
BspQI	GCTCTTC	1 cut(s)	416
BspT107I	GGYRCC	2 cut(s)	358, 378
BsrDI	GCAATG	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	502
BsrI	ACTGG	4 cut(s)	230, 432, 683, 753
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	6 cut(s)	33, 119, 382, 600, 686, 906
BssHII	GCGCGC	1 cut(s)	920
BssMI	GATC	3 cut(s)	221, 283, 862
BssNI	GRCGYC	3 cut(s)	348, 359, 379
BssT1I	CCWWGG	4 cut(s)	33, 119, 382, 686
Bst2UI	CCWGG	1 cut(s)	908
Bst4CI	ACNGT	3 cut(s)	368, 547, 890
Bst6I	CTCTTC	2 cut(s)	416, 450
BstACI	GRCGYC	3 cut(s)	348, 359, 379
BstBAI	YACGTR	1 cut(s)	718
BstC8I	GCNNGC	2 cut(s)	319, 922
BstDEI	CTNAG	2 cut(s)	539, 653
BstDSI	CCRYGG	2 cut(s)	119, 686
BstF5I	GGATG	1 cut(s)	781
BstFNI	CGCG	3 cut(s)	465, 478, 922
BstH2I	RGCGCY	2 cut(s)	362, 382
BstHHI	GCGC	6 cut(s)	361, 381, 467, 480, 922, 924
BstKTI	GATC	3 cut(s)	224, 286, 865
BstMBI	GATC	3 cut(s)	221, 283, 862
BstMWI	GCNNNNNNNGC	5 cut(s)	248, 257, 387, 508, 517
BstNI	CCWGG	1 cut(s)	908
BstNSI	RCATGY	2 cut(s)	634, 918
BstPAI	GACNNNNGTC	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	106, 906
BstSFI	CTRYAG	3 cut(s)	249, 312, 925
BstUI	CGCG	3 cut(s)	465, 478, 922
BstV1I	GCAGC	2 cut(s)	220, 326
BstX2I	RGATCY	2 cut(s)	221, 862
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	2 cut(s)	221, 862
BsuI	GTATCC	1 cut(s)	675
BsuRI	GGCC	3 cut(s)	22, 124, 387
BtgI	CCRYGG	2 cut(s)	119, 686
BtsCI	GGATG	1 cut(s)	781
BtsIMutI	CAGTG	1 cut(s)	552
Cac8I	GCNNGC	2 cut(s)	319, 922
CciI	TCATGA	1 cut(s)	760
CfoI	GCGC	6 cut(s)	361, 381, 467, 480, 922, 924
Cfr10I	RCCGGY	1 cut(s)	502
Cfr13I	GGNCC	4 cut(s)	21, 110, 152, 197
CseI	GACGC	1 cut(s)	619
Csp6I	GTAC	4 cut(s)	325, 442, 543, 715
CviAII	CATG	9 cut(s)	120, 148, 281, 287, 631, 687, 761, 826, 915
CviQI	GTAC	4 cut(s)	325, 442, 543, 715
DdeI	CTNAG	2 cut(s)	539, 653
DinI	GGCGCC	2 cut(s)	360, 380
DpnI	GATC	3 cut(s)	223, 285, 864
DpnII	GATC	3 cut(s)	221, 283, 862
Eam1104I	CTCTTC	2 cut(s)	416, 450
EarI	CTCTTC	2 cut(s)	416, 450
Ecl136II	GAGCTC	1 cut(s)	409
Eco130I	CCWWGG	4 cut(s)	33, 119, 382, 686
Eco24I	GRGCYC	1 cut(s)	411
Eco47I	GGWCC	3 cut(s)	110, 152, 197
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	2 cut(s)	397, 562
EcoICRI	GAGCTC	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	906
EcoT14I	CCWWGG	4 cut(s)	33, 119, 382, 686
EcoT38I	GRGCYC	1 cut(s)	411
EgeI	GGCGCC	2 cut(s)	360, 380
EheI	GGCGCC	2 cut(s)	360, 380
ErhI	CCWWGG	4 cut(s)	33, 119, 382, 686
FaeI	CATG	9 cut(s)	123, 151, 284, 290, 634, 690, 764, 829, 918
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FaqI	GGGAC	1 cut(s)	689
FatI	CATG	9 cut(s)	119, 147, 280, 286, 630, 686, 760, 825, 914
FauI	CCCGC	2 cut(s)	233, 650
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	3 cut(s)	209, 315, 388
FokI	GGATG	1 cut(s)	788
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	3 cut(s)	209, 315, 388
FspBI	CTAG	3 cut(s)	44, 300, 884
GlaI	GCGC	6 cut(s)	360, 380, 466, 479, 921, 923
GluI	GCNGC	3 cut(s)	209, 315, 388
GsuI	CTGGAG	2 cut(s)	449, 713
HaeII	RGCGCY	2 cut(s)	362, 382
HaeIII	GGCC	3 cut(s)	22, 124, 387
HapII	CCGG	3 cut(s)	108, 503, 860
HgaI	GACGC	1 cut(s)	619
HhaI	GCGC	6 cut(s)	361, 381, 467, 480, 922, 924
Hin1I	GRCGYC	3 cut(s)	348, 359, 379
Hin1II	CATG	9 cut(s)	123, 151, 284, 290, 634, 690, 764, 829, 918
Hin6I	GCGC	6 cut(s)	359, 379, 465, 478, 920, 922
HinP1I	GCGC	6 cut(s)	359, 379, 465, 478, 920, 922
HinfI	GANTC	2 cut(s)	431, 900
HpaII	CCGG	3 cut(s)	108, 503, 860
HphI	GGTGA	4 cut(s)	155, 380, 394, 895
Hpy166II	GTNNAC	1 cut(s)	832
Hpy188I	TCNGA	2 cut(s)	221, 597
Hpy188III	TCNNGA	6 cut(s)	300, 626, 761, 773, 860, 866
Hpy8I	GTNNAC	1 cut(s)	832
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	4 cut(s)	68, 182, 724, 814
HpyCH4III	ACNGT	3 cut(s)	368, 547, 890
HpyCH4IV	ACGT	2 cut(s)	348, 717
HpyCH4V	TGCA	5 cut(s)	208, 251, 314, 709, 805
HpyF10VI	GCNNNNNNNGC	5 cut(s)	248, 257, 387, 508, 517
HpyF3I	CTNAG	2 cut(s)	539, 653
HpySE526I	ACGT	2 cut(s)	348, 717
Hsp92I	GRCGYC	3 cut(s)	348, 359, 379
Hsp92II	CATG	9 cut(s)	123, 151, 284, 290, 634, 690, 764, 829, 918
HspAI	GCGC	6 cut(s)	359, 379, 465, 478, 920, 922
KasI	GGCGCC	2 cut(s)	358, 378
Kpn2I	TCCGGA	1 cut(s)	859
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	221, 283, 862
LguI	GCTCTTC	1 cut(s)	416
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	2 cut(s)	220, 326
MaeI	CTAG	3 cut(s)	44, 300, 884
MaeII	ACGT	2 cut(s)	348, 717
MaeIII	GTNAC	3 cut(s)	349, 368, 607
MalI	GATC	3 cut(s)	223, 285, 864
MboI	GATC	3 cut(s)	221, 283, 862
MboII	GAAGA	3 cut(s)	403, 467, 751
MflI	RGATCY	2 cut(s)	221, 862
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	1 cut(s)	266
Mly113I	GGCGCC	2 cut(s)	359, 379
MlyI	GAGTC	1 cut(s)	440
MnlI	CCTC	9 cut(s)	155, 171, 256, 307, 338, 353, 491, 610, 791
MroI	TCCGGA	1 cut(s)	859
MseI	TTAA	1 cut(s)	513
MslI	CAYNNNNRTG	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	3 cut(s)	108, 503, 860
MspR9I	CCNGG	2 cut(s)	108, 908
MvaI	CCWGG	1 cut(s)	908
MvnI	CGCG	3 cut(s)	465, 478, 922
MwoI	GCNNNNNNNGC	5 cut(s)	248, 257, 387, 508, 517
NarI	GGCGCC	2 cut(s)	359, 379
NciI	CCSGG	1 cut(s)	108
NcoI	CCATGG	2 cut(s)	119, 686
NdeII	GATC	3 cut(s)	221, 283, 862
NlaIII	CATG	9 cut(s)	123, 151, 284, 290, 634, 690, 764, 829, 918
NlaIV	GGNNCC	4 cut(s)	153, 223, 360, 380
NmuCI	GTSAC	3 cut(s)	349, 368, 607
NspI	RCATGY	2 cut(s)	634, 918
PagI	TCATGA	1 cut(s)	760
PauI	GCGCGC	1 cut(s)	920
PciI	ACATGT	1 cut(s)	630
PciSI	GCTCTTC	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	900
PflFI	GACNNNGTC	1 cut(s)	890
PkrI	GCNGC	3 cut(s)	210, 316, 389
PleI	GAGTC	1 cut(s)	439
PluTI	GGCGCC	2 cut(s)	362, 382
PpsI	GAGTC	1 cut(s)	439
Ppu21I	YACGTR	1 cut(s)	718
PscI	ACATGT	1 cut(s)	630
PshAI	GACNNNNGTC	1 cut(s)	430
Psp124BI	GAGCTC	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	906
PspGI	CCWGG	1 cut(s)	906
PspN4I	GGNNCC	4 cut(s)	153, 223, 360, 380
PspPI	GGNCC	4 cut(s)	21, 110, 152, 197
PstI	CTGCAG	2 cut(s)	253, 316
PsuI	RGATCY	2 cut(s)	221, 862
PsyI	GACNNNGTC	1 cut(s)	890
PteI	GCGCGC	1 cut(s)	920
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	4 cut(s)	326, 443, 544, 716
RsaNI	GTAC	4 cut(s)	325, 442, 543, 715
RseI	CAYNNNNRTG	1 cut(s)	285
SacI	GAGCTC	1 cut(s)	411
SapI	GCTCTTC	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	3 cut(s)	209, 315, 388
Sau3AI	GATC	3 cut(s)	221, 283, 862
Sau96I	GGNCC	4 cut(s)	21, 110, 152, 197
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	108, 908
SduI	GDGCHC	1 cut(s)	411
SfcI	CTRYAG	3 cut(s)	249, 312, 925
SfoI	GGCGCC	2 cut(s)	360, 380
SinI	GGWCC	3 cut(s)	110, 152, 197
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	1 cut(s)	266
SsiI	CCGC	3 cut(s)	226, 388, 657
SspDI	GGCGCC	2 cut(s)	358, 378
SspMI	CTAG	3 cut(s)	44, 300, 884
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	2 cut(s)	106, 906
StyI	CCWWGG	4 cut(s)	33, 119, 382, 686
TaaI	ACNGT	3 cut(s)	368, 547, 890
TaiI	ACGT	2 cut(s)	351, 720
TaqI	TCGA	4 cut(s)	345, 419, 438, 448
TasI	AATT	1 cut(s)	266
TatI	WGTACW	2 cut(s)	441, 542
TauI	GCSGC	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	900
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	1 cut(s)	552
TseFI	GTSAC	3 cut(s)	349, 368, 607
TseI	GCWGC	2 cut(s)	208, 314
Tsp45I	GTSAC	3 cut(s)	349, 368, 607
TspDTI	ATGAA	4 cut(s)	388, 743, 749, 792
TspRI	CASTG	1 cut(s)	552
Tth111I	GACNNNGTC	1 cut(s)	890
VpaK11BI	GGWCC	3 cut(s)	110, 152, 197
XbaI	TCTAGA	1 cut(s)	299
XceI	RCATGY	2 cut(s)	634, 918
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XspI	CTAG	3 cut(s)	44, 300, 884
ZraI	GACGTC	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.