Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0021147

Physical Location & Seq

Genomic Coordinates Reverse (-)

68018859 .. 68019248

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG469600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAAGACACTACTTGGGTTCCCTACGCCACTGCATGGCTGGGAGCTCTAAACCTTATCCTGTTTTCCCGCCATCTCCGCCGCCGAAAACTCAATTTACCGCCCCGCCCAAAACCTTGGCCCATCATTGGAAACCTCAACCTCATAGGCCACCTCCCTCACCGTTCTGTCCATGCACTTTCCCAAATATATGGGCCCATCATGCAGCTGAAATTCGGGTCCTTCCCCATTGTCGTGGTCTCCTCGGTCGAAATGGCCGAGGCCTTCCTCAAAACTGACGACGTTACTTTGGCCGACCGGCCCAAAATGGCGGCGGGAAAGTACACCACCTACAACTACTCCGACATCACTTTGTCCCCTTATGGCCCATATTGGCGCCAGGGCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

129

Amino Acids

14.72

Weight (kDa)

9.92

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	34 - 129	2e-13	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0021147)

Species	Orthologous Gene IDs
malus_domestica	MD15G1218300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0145871
rosa_laevigata	RLG00000017227
rosa_samantha	Rh2BG169500 Rh2DG469600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	375
AccB7I	CCANNNNNTGG	1 cut(s)	36
AciI	CCGC	7 cut(s)	70, 79, 82, 101, 106, 311, 314
AcoI	YGGCCR	2 cut(s)	255, 291
AcsI	RAATTY	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	376
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	36, 128
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	2 cut(s)	47, 208
AluI	AGCT	2 cut(s)	47, 208
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	244
AoxI	GGCC	9 cut(s)	119, 148, 194, 255, 261, 291, 299, 364, 382
ApaI	GGGCCC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	7 cut(s)	120, 194, 195, 219, 300, 365, 382
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	375
BanII	GRGCYC	2 cut(s)	49, 198
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	3 cut(s)	81, 131, 206
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	244
BfoI	RGCGCY	1 cut(s)	379
BisI	GCNGC	3 cut(s)	82, 206, 312
BlsI	GCNGC	3 cut(s)	83, 207, 313
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	7 cut(s)	120, 194, 195, 219, 300, 365, 382
BmiI	GGNNCC	4 cut(s)	21, 196, 220, 377
BmrFI	CCNGG	1 cut(s)	380
BpiI	GAAGAC	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	376
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	4 cut(s)	116, 243, 258, 379
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 128
Bse118I	RCCGGY	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	4 cut(s)	116, 243, 258, 379
BseLI	CCNNNNNNNGG	2 cut(s)	36, 128
BseRI	GAGGAG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	217
BseYI	CCCAGC	1 cut(s)	40
Bsh1285I	CGRYCG	2 cut(s)	249, 298
BshFI	GGCC	9 cut(s)	121, 150, 196, 257, 263, 293, 301, 366, 384
BshNI	GGYRCC	1 cut(s)	375
BsiEI	CGRYCG	2 cut(s)	249, 298
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	2 cut(s)	36, 128
BsmAI	GTCTC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	340
BsnI	GGCC	9 cut(s)	121, 150, 196, 257, 263, 293, 301, 366, 384
Bso31I	GGTCTC	1 cut(s)	244
Bsp120I	GGGCCC	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	49, 198
BspACI	CCGC	7 cut(s)	70, 79, 82, 101, 106, 311, 314
BspANI	GGCC	9 cut(s)	121, 150, 196, 257, 263, 293, 301, 366, 384
BspLI	GGNNCC	4 cut(s)	21, 196, 220, 377
BspT107I	GGYRCC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	297
BssAI	RCCGGY	1 cut(s)	297
BssECI	CCNNGG	4 cut(s)	116, 243, 258, 379
BssNI	GRCGYC	1 cut(s)	376
BssT1I	CCWWGG	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	164
BstACI	GRCGYC	1 cut(s)	376
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	378
BstMAI	GTCTC	1 cut(s)	244
BstMCI	CGRYCG	2 cut(s)	249, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 202
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	378
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	12
BstXI	CCANNNNNNTGG	3 cut(s)	117, 191, 235
BsuRI	GGCC	9 cut(s)	121, 150, 196, 257, 263, 293, 301, 366, 384
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
CfoI	GCGC	1 cut(s)	378
Cfr10I	RCCGGY	1 cut(s)	297
Cfr13I	GGNCC	7 cut(s)	120, 194, 195, 219, 300, 365, 382
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	3 cut(s)	36, 173, 202
CviQI	GTAC	1 cut(s)	322
DinI	GGCGCC	1 cut(s)	377
EaeI	YGGCCR	2 cut(s)	255, 291
EciI	GGCGGA	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	116
Eco147I	AGGCCT	1 cut(s)	263
Eco24I	GRGCYC	2 cut(s)	49, 198
Eco31I	GGTCTC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	116
EcoT38I	GRGCYC	2 cut(s)	49, 198
EgeI	GGCGCC	1 cut(s)	377
EheI	GGCGCC	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	116
FaeI	CATG	3 cut(s)	39, 176, 205
FaiI	YATR	8 cut(s)	37, 146, 174, 190, 192, 203, 363, 370
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	3 cut(s)	35, 172, 201
FauI	CCCGC	3 cut(s)	77, 113, 307
Fnu4HI	GCNGC	3 cut(s)	82, 206, 312
FriOI	GRGCYC	2 cut(s)	49, 198
Fsp4HI	GCNGC	3 cut(s)	82, 206, 312
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	3 cut(s)	82, 206, 312
GsaI	CCCAGC	1 cut(s)	44
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	9 cut(s)	121, 150, 196, 257, 263, 293, 301, 366, 384
HapII	CCGG	1 cut(s)	298
HhaI	GCGC	1 cut(s)	378
Hin1I	GRCGYC	1 cut(s)	376
Hin1II	CATG	3 cut(s)	39, 176, 205
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	1 cut(s)	343
Hpy8I	GTNNAC	1 cut(s)	324
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	2 cut(s)	232, 274
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	3 cut(s)	35, 176, 205
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 202
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	376
Hsp92II	CATG	3 cut(s)	39, 176, 205
HspAI	GCGC	1 cut(s)	376
KasI	GGCGCC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	4 cut(s)	26, 74, 311, 365
Lsp1109I	GCAGC	1 cut(s)	217
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	283
MboII	GAAGA	1 cut(s)	17
MhlI	GDGCHC	2 cut(s)	49, 198
MluCI	AATT	2 cut(s)	94, 212
Mly113I	GGCGCC	1 cut(s)	376
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	7 cut(s)	146, 152, 164, 168, 253, 253, 278
MseI	TTAA	1 cut(s)	388
MslI	CAYNNNNRTG	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	208
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	2 cut(s)	78, 202
NarI	GGCGCC	1 cut(s)	376
NlaIII	CATG	3 cut(s)	39, 176, 205
NlaIV	GGNNCC	4 cut(s)	21, 196, 220, 377
NmeAIII	GCCGAG	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PflMI	CCANNNNNTGG	1 cut(s)	36
PkrI	GCNGC	3 cut(s)	83, 207, 313
PluTI	GGCGCC	1 cut(s)	379
PpuMI	RGGWCCY	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	49
Psp5II	RGGWCCY	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	4 cut(s)	21, 196, 220, 377
PspOMI	GGGCCC	1 cut(s)	194
PspPI	GGNCC	7 cut(s)	120, 194, 195, 219, 300, 365, 382
PspPPI	RGGWCCY	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	388
SatI	GCNGC	3 cut(s)	82, 206, 312
Sau96I	GGNCC	7 cut(s)	120, 194, 195, 219, 300, 365, 382
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	2 cut(s)	49, 198
SetI	ASST	9 cut(s)	49, 57, 118, 138, 144, 156, 210, 285, 332
SfoI	GGCGCC	1 cut(s)	377
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	94, 212
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	7 cut(s)	70, 79, 82, 101, 106, 311, 314
SspDI	GGCGCC	1 cut(s)	375
SstI	GAGCTC	1 cut(s)	49
StuI	AGGCCT	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	1 cut(s)	249
TaqII	GACCGA	1 cut(s)	235
TasI	AATT	2 cut(s)	94, 212
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	2 cut(s)	84, 314
Tru1I	TTAA	1 cut(s)	388
Tru9I	TTAA	1 cut(s)	388
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	1 cut(s)	205
TspRI	CASTG	1 cut(s)	37
Van91I	CCANNNNNTGG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	1 cut(s)	212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.