Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004354

Physical Location & Seq

Genomic Coordinates Reverse (-)

48574580 .. 48575020

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1391300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCAAGCTAACAGTTTTGAGATACCTGATGTTGTATTTGACAGTTTAAAAGGAAACGGTTGTGTCTTGCATTATGTTCCTGACCTCCCTGATATCTCTCCTGGTGGCATGCTGATGAAAAGACTTGGTTCTGCTCCATATTGTGGTTTTATGCCACCAACAATGCATCGCCAAAAACGTCTTCGAGAATCAACAACTTTATTCTCTACTTTTGGTGGTAGTTTAAAAAACGGTTTCCCCCAGTTTGATCAATTTCAAAATGATACTTGTGATAAAGTTGCTCGAACGTTTGGGTTGCCTTTTCGTCATGATCCTGATCCTACCACCAAGAGTCCTCTGTCTTTTGGTGTAATTCAGGGTAGCCATTCCCTTTCAAATGGCAATTCTTCTGCTTCTAAGCCCACATCCGGGACCGTGAAGCTGGAGCTCCCTTCACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007033 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0008285 GO:0009555 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009739 GO:0009740 GO:0009751 GO:0009755 GO:0009787 GO:0009789 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0040008 GO:0042127 GO:0042221 GO:0042493 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045926 GO:0045935 GO:0046677 GO:0048229 GO:0048232 GO:0048235 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048653 GO:0048654 GO:0048655 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905957 GO:1905959 GO:1990019 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

147

Amino Acids

15.87

Weight (kDa)

8.51

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11440 AT3G11440 AT3G11440 AT3G11440 AT5G06100 AT5G06100 AT5G06100 AT5G06100 AT5G06100
fragaria_vesca	FvH4_7g04470 FvH4_7g04470 FvH4_7g04470
malus_domestica	MD02G1269700.v1.1 MD07G1085000.v1.1 MD15G1391300.v1.1
prunus_persica	Prupe.2G050100_v2.0.a1 Prupe.2G050100_v2.0.a1
pyrus_communis	pycom02g23080 pycom07g03730
rosa_chinensis	RchiOBHm_Chr1g0329681
rosa_laevigata	RLG00000029870
rosa_multiflora	Rmu_sc0004219.1_g000005
rosa_roxburghii	Rroxscaffold_4G00320770
rosa_rugosa	Rorug01G0081900 Rorug01G0082000.1 Rorug01G0082100 Rorug01G0082200
rosa_samantha	Rh1AG100500 Rh1BG079800 Rh1CG096100 Rh1DG102000
rosa_wichuraiana	Rw1G007950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	143
AclI	AACGTT	1 cut(s)	287
AclWI	GGATC	2 cut(s)	305, 311
AfiI	CCNNNNNNNGG	3 cut(s)	143, 407, 408
AgsI	TTSAA	2 cut(s)	257, 375
AjnI	CCWGG	1 cut(s)	100
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	3 cut(s)	8, 421, 427
AluI	AGCT	3 cut(s)	8, 421, 427
Alw21I	GWGCWC	1 cut(s)	429
AlwI	GGATC	2 cut(s)	305, 311
AspS9I	GGNCC	1 cut(s)	411
AsuC2I	CCSGG	1 cut(s)	409
AvaII	GGWCC	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	102
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	409
Bme1390I	CCNGG	2 cut(s)	102, 409
Bme18I	GGWCC	1 cut(s)	411
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	2 cut(s)	102, 409
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	175
BmuI	ACTGGG	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	409
BsaBI	GATNNNNATC	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 407, 408
Bse1I	ACTGG	1 cut(s)	241
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	404
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	3 cut(s)	143, 407, 408
BseNI	ACTGG	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	3 cut(s)	143, 407, 408
BsmFI	GGGAC	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	3 cut(s)	247, 310, 316
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	412
BspPI	GGATC	2 cut(s)	305, 311
BsrI	ACTGG	1 cut(s)	241
BssMI	GATC	3 cut(s)	247, 310, 316
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	5 cut(s)	14, 44, 59, 233, 415
BstC8I	GCNNGC	2 cut(s)	6, 110
BstDEI	CTNAG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	404
BstKTI	GATC	3 cut(s)	250, 313, 319
BstMBI	GATC	3 cut(s)	247, 310, 316
BstNI	CCWGG	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	112
BstSCI	CCNGG	2 cut(s)	100, 407
BstV2I	GAAGAC	1 cut(s)	173
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	6, 110
CciI	TCATGA	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	411
CviAII	CATG	2 cut(s)	109, 308
CviJI	RGCY	5 cut(s)	8, 363, 400, 421, 427
CviKI_1	RGCY	5 cut(s)	8, 363, 400, 421, 427
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	3 cut(s)	249, 312, 318
DpnII	GATC	3 cut(s)	247, 310, 316
DraI	TTTAAA	2 cut(s)	48, 225
Ecl136II	GAGCTC	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	429
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	411
Eco53kI	GAGCTC	1 cut(s)	427
EcoICRI	GAGCTC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	100
EcoRV	GATATC	1 cut(s)	94
EcoT22I	ATGCAT	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	429
FaeI	CATG	2 cut(s)	112, 311
FaiI	YATR	5 cut(s)	75, 110, 139, 152, 309
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	2 cut(s)	108, 307
FbaI	TGATCA	1 cut(s)	247
FokI	GGATG	1 cut(s)	391
FriOI	GRGCYC	1 cut(s)	429
HapII	CCGG	1 cut(s)	408
Hin1II	CATG	2 cut(s)	112, 311
HinfI	GANTC	2 cut(s)	188, 331
HpaII	CCGG	1 cut(s)	408
Hpy188III	TCNNGA	4 cut(s)	80, 185, 308, 314
HpyAV	CCTTC	1 cut(s)	441
HpyCH4III	ACNGT	5 cut(s)	14, 44, 59, 233, 415
HpyCH4IV	ACGT	2 cut(s)	178, 287
HpyCH4V	TGCA	3 cut(s)	4, 70, 166
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	2 cut(s)	178, 287
Hsp92II	CATG	2 cut(s)	112, 311
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	3 cut(s)	247, 310, 316
LmnI	GCTCC	3 cut(s)	139, 424, 432
LweI	GCATC	1 cut(s)	175
MaeII	ACGT	2 cut(s)	178, 287
MalI	GATC	3 cut(s)	249, 312, 318
MboI	GATC	3 cut(s)	247, 310, 316
MboII	GAAGA	2 cut(s)	173, 378
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	3 cut(s)	251, 351, 382
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	2 cut(s)	95, 345
Mph1103I	ATGCAT	1 cut(s)	168
MseI	TTAA	2 cut(s)	47, 224
MslI	CAYNNNNRTG	1 cut(s)	113
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	2 cut(s)	102, 409
MvaI	CCWGG	1 cut(s)	102
NciI	CCSGG	1 cut(s)	409
NdeII	GATC	3 cut(s)	247, 310, 316
NlaIII	CATG	2 cut(s)	112, 311
NlaIV	GGNNCC	1 cut(s)	412
NsiI	ATGCAT	1 cut(s)	168
NspI	RCATGY	1 cut(s)	112
PaeI	GCATGC	1 cut(s)	112
PagI	TCATGA	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	407
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	429
Psp1406I	AACGTT	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	411
RseI	CAYNNNNRTG	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	429
SaqAI	TTAA	2 cut(s)	47, 224
Sau3AI	GATC	3 cut(s)	247, 310, 316
Sau96I	GGNCC	1 cut(s)	411
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	2 cut(s)	102, 409
SduI	GDGCHC	1 cut(s)	429
SetI	ASST	7 cut(s)	10, 28, 87, 181, 290, 423, 429
SfaNI	GCATC	1 cut(s)	175
SinI	GGWCC	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	113
SphI	GCATGC	1 cut(s)	112
Sse9I	AATT	3 cut(s)	251, 351, 382
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	2 cut(s)	100, 407
TaaI	ACNGT	5 cut(s)	14, 44, 59, 233, 415
TaiI	ACGT	2 cut(s)	181, 290
TaqI	TCGA	2 cut(s)	184, 283
TasI	AATT	3 cut(s)	251, 351, 382
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	2 cut(s)	47, 224
Tru9I	TTAA	2 cut(s)	47, 224
TspDTI	ATGAA	1 cut(s)	131
Van91I	CCANNNNNTGG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	411
XceI	RCATGY	1 cut(s)	112
Zsp2I	ATGCAT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.