Rorug01G0082100
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004354
Physical Location & Seq
Forward (+)
13376229 .. 13382025
5797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0082100.1

Sequence Viewer

Length: 285 bp
ATGTGGGTCGGGTCAAAGACCGATCAGCGTAGAGAGAAAAAGGATAAGAGTGAGCGGAACACGATTAATAGTGACAAATCAATTATGGTGCAAATAACGGGTTCAGTTTCGACGGCGAAGTACATAAAAAAGGAGATTGATAAGACTGGATTTGAAATGAGCCCAATAGAGATGTTTAGAAGGTTTCATGTTTCTAAGCCTAAAGACGGAAAGCCGGAACATTGGCGGAATGAGAGGGCAAAGGATCTTTATGAAAGTATGGAACTGCAAAAACGTATAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007033 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0008285 GO:0009555 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009739 GO:0009740 GO:0009751 GO:0009755 GO:0009787 GO:0009789 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0040008 GO:0042127 GO:0042221 GO:0042493 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045926 GO:0045935 GO:0046677 GO:0048229 GO:0048232 GO:0048235 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048653 GO:0048654 GO:0048655 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905957 GO:1905959 GO:1990019 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

94

Amino Acids

11.21

Weight (kDa)

9.65

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 55
AciI CCGC 2 cut(s) 55, 226
AclWI GGATC 1 cut(s) 252
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 1 cut(s) 155
AlwI GGATC 1 cut(s) 252
AseI ATTAAT 1 cut(s) 66
BanII GRGCYC 1 cut(s) 164
BceAI ACGGC 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 151
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 2 cut(s) 22, 244
BspACI CCGC 2 cut(s) 55, 226
BspPI GGATC 1 cut(s) 252
BsrBI CCGCTC 1 cut(s) 55
BsrI ACTGG 1 cut(s) 151
BssMI GATC 2 cut(s) 22, 244
BstDEI CTNAG 1 cut(s) 195
BstKTI GATC 2 cut(s) 25, 247
BstMBI GATC 2 cut(s) 22, 244
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 188
CviJI RGCY 3 cut(s) 162, 199, 214
CviKI_1 RGCY 3 cut(s) 162, 199, 214
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 195
DpnI GATC 2 cut(s) 24, 246
DpnII GATC 2 cut(s) 22, 244
EciI GGCGGA 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 164
FaeI CATG 1 cut(s) 191
FaiI YATR 6 cut(s) 86, 125, 189, 252, 260, 278
FatI CATG 1 cut(s) 187
FriOI GRGCYC 1 cut(s) 164
HapII CCGG 1 cut(s) 215
Hin1II CATG 1 cut(s) 191
HpaII CCGG 1 cut(s) 215
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 174
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 2 cut(s) 91, 268
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 1 cut(s) 191
Kzo9I GATC 2 cut(s) 22, 244
LpnPI CCDG 2 cut(s) 132, 228
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 71
MalI GATC 2 cut(s) 24, 246
MbiI CCGCTC 1 cut(s) 55
MboI GATC 2 cut(s) 22, 244
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 1 cut(s) 81
MnlI CCTC 1 cut(s) 228
MseI TTAA 1 cut(s) 66
MspI CCGG 1 cut(s) 215
NdeII GATC 2 cut(s) 22, 244
NlaIII CATG 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 71
PshBI ATTAAT 1 cut(s) 66
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 66
Sau3AI GATC 2 cut(s) 22, 244
SduI GDGCHC 1 cut(s) 164
SetI ASST 2 cut(s) 185, 277
SgeI CNNG 6 cut(s) 22, 73, 111, 159, 200, 227
Sse9I AATT 1 cut(s) 81
SsiI CCGC 2 cut(s) 55, 226
TaiI ACGT 1 cut(s) 277
TaqI TCGA 1 cut(s) 110
TaqII GACCGA 1 cut(s) 35
TasI AATT 1 cut(s) 81
TatI WGTACW 1 cut(s) 120
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 176, 267
TspGWI ACGGA 1 cut(s) 222
VspI ATTAAT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.