pycom07g03730
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0004354
Physical Location & Seq
Reverse (-)
3166237 .. 3167305
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g03730.2

Sequence Viewer

Length: 888 bp
ATGGTTTCCCCCAGTTTGATCGATCTAAATGATACTTGTGAAAAAGTTGCTCGAACAGTTGGGTTGCCTTTTCCTCATGATCCTGATCCTACCATTCCACTGTCTTTTGGTGTAATTCAGGGTAGCCATTCCCTTTCAAATGGCAATTCTTCGGCTTCTAAGCCCACAACCGGGGCTGTGAAGCTGGAGCTCCCTTCACTCCAATATCCAGAAACTGATTTAGGTAGCTGGAGCACTTCTCCTCCACCCCCCTTACTTGAATCAGTTGATGCTTTTATCCAATCGCCCCCACCGGTTGGTACATTTGAGTCTGATTGCACTTCACCACGTAATAGCGGCCTGCTAGATGCTTTACTCCATGAGGCAAAGACTCTCGGTAGTGCGAATAATCATTCATCTGAGAAGAGTTCAAATTCATCCAGTGTTACTCCTGGCGATGTGGCTGAAAGTTCCAATTTGAACATTTGCGAGACAGAATGGGAAGAATATCGAGATCCGATTTCTCCAGTGGGTCATTCTGCTACTTCGCTGTTCAGTGAGTGTACACCTATCAGTGCCAGTGGAAGTTCATTAGATGAACCGCTGCCTACTGAGACCTTTACTGGGTGCAATGTGAAATCAGAACTGGTAGACCAAGCTTGGACCCCAGATACAGAAAGAGAAACCGCACTTCAGTTGGATTATACTCGTCCTGATGCTATACTTGCTTCAGAATGGTTTGGTAACGGCATGCATGAAAGTATTGCATCACTGCTGGGAGATGATTTGGCAGCGGAATGCAAGCACCTGGCTTCTGGTAGTCCTACATCAAATCAAGGGTTGGGTTTTAGTTCATGTCCATGGAACACTATGCTTCCCGTCTGTCAAATGTCTGCTCAGCATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007033 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0008285 GO:0009555 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009739 GO:0009740 GO:0009751 GO:0009755 GO:0009787 GO:0009789 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0040008 GO:0042127 GO:0042221 GO:0042493 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045926 GO:0045935 GO:0046677 GO:0048229 GO:0048232 GO:0048235 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048653 GO:0048654 GO:0048655 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905957 GO:1905959 GO:1990019 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

296

Amino Acids

31.2

Weight (kDa)

4.32

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 296
AccI GTMKAC 1 cut(s) 630
AciI CCGC 4 cut(s) 336, 581, 666, 773
AclWI GGATC 3 cut(s) 74, 80, 488
AcsI RAATTY 1 cut(s) 412
AcuI CTGAAG 2 cut(s) 656, 693
AfaI GTAC 2 cut(s) 301, 544
AfiI CCNNNNNNNGG 4 cut(s) 170, 171, 296, 603
AgeI ACCGGT 1 cut(s) 292
AgsI TTSAA 4 cut(s) 138, 260, 411, 460
AjnI CCWGG 2 cut(s) 430, 786
AluBI AGCT 4 cut(s) 184, 190, 228, 638
AluI AGCT 4 cut(s) 184, 190, 228, 638
Alw21I GWGCWC 2 cut(s) 192, 236
Alw26I GTCTC 2 cut(s) 464, 587
AlwI GGATC 3 cut(s) 74, 80, 488
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 1 cut(s) 337
ApeKI GCWGC 2 cut(s) 583, 770
ApoI RAATTY 1 cut(s) 412
AsiGI ACCGGT 1 cut(s) 292
AspS9I GGNCC 1 cut(s) 642
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 315
AvaII GGWCC 1 cut(s) 642
BanII GRGCYC 1 cut(s) 192
Bbv12I GWGCWC 2 cut(s) 192, 236
BbvI GCAGC 2 cut(s) 570, 782
BceAI ACGGC 1 cut(s) 742
BciT130I CCWGG 2 cut(s) 432, 788
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 464, 587
BfaI CTAG 1 cut(s) 344
BisI GCNGC 3 cut(s) 337, 584, 771
BlpI GCTNAGC 1 cut(s) 876
BlsI GCNGC 3 cut(s) 338, 585, 772
Bme1390I CCNGG 3 cut(s) 172, 432, 788
Bme18I GGWCC 1 cut(s) 642
BmgT120I GGNCC 1 cut(s) 642
BmiI GGNNCC 1 cut(s) 644
BmrFI CCNGG 3 cut(s) 172, 432, 788
BmrI ACTGGG 2 cut(s) 6, 612
BmsI GCATC 4 cut(s) 259, 337, 685, 755
BmuI ACTGGG 2 cut(s) 6, 612
BplI GAGNNNNNCTC 2 cut(s) 223, 255
BpmI CTGGAG 3 cut(s) 206, 250, 489
Bpu1102I GCTNAGC 1 cut(s) 876
BpuMI CCSGG 1 cut(s) 172
Bsa29I ATCGAT 1 cut(s) 21
BsaAI YACGTR 1 cut(s) 329
BsaBI GATNNNNATC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 587
BsaJI CCNNGG 2 cut(s) 171, 839
BsaWI WCCGGW 1 cut(s) 292
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 4 cut(s) 170, 171, 296, 603
Bse118I RCCGGY 1 cut(s) 292
Bse1I ACTGG 6 cut(s) 12, 420, 506, 558, 607, 630
Bse3DI GCAATG 1 cut(s) 616
Bse8I GATNNNNATC 1 cut(s) 84
BseBI CCWGG 2 cut(s) 432, 788
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 171, 839
BseGI GGATG 2 cut(s) 416, 880
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 4 cut(s) 170, 171, 296, 603
BseMI GCAATG 1 cut(s) 616
BseMII CTCAG 2 cut(s) 390, 582
BseNI ACTGG 6 cut(s) 12, 420, 506, 558, 607, 630
BseRI GAGGAG 1 cut(s) 231
BseXI GCAGC 2 cut(s) 570, 782
BseYI CCCAGC 1 cut(s) 754
BshFI GGCC 1 cut(s) 339
BshTI ACCGGT 1 cut(s) 292
BshVI ATCGAT 1 cut(s) 21
BsiHKAI GWGCWC 2 cut(s) 192, 236
BsiSI CCGG 2 cut(s) 171, 293
BslI CCNNNNNNNGG 4 cut(s) 170, 171, 296, 603
BsmAI GTCTC 2 cut(s) 464, 587
BsmI GAATGC 1 cut(s) 782
BsnI GGCC 1 cut(s) 339
Bso31I GGTCTC 1 cut(s) 587
Bsp1286I GDGCHC 2 cut(s) 192, 236
Bsp1407I TGTACA 1 cut(s) 542
Bsp143I GATC 5 cut(s) 18, 22, 79, 85, 493
Bsp1720I GCTNAGC 1 cut(s) 876
Bsp19I CCATGG 1 cut(s) 839
BspACI CCGC 4 cut(s) 336, 581, 666, 773
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 2 cut(s) 391, 583
BspDI ATCGAT 1 cut(s) 21
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 644
BspPI GGATC 3 cut(s) 74, 80, 488
BspTNI GGTCTC 1 cut(s) 587
BsrDI GCAATG 1 cut(s) 616
BsrFI RCCGGY 1 cut(s) 292
BsrGI TGTACA 1 cut(s) 542
BsrI ACTGG 6 cut(s) 12, 420, 506, 558, 607, 630
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 2 cut(s) 171, 839
BssMI GATC 5 cut(s) 18, 22, 79, 85, 493
BssT1I CCWWGG 1 cut(s) 839
Bst2UI CCWGG 2 cut(s) 432, 788
Bst4CI ACNGT 2 cut(s) 58, 102
Bst6I CTCTTC 1 cut(s) 398
BstAUI TGTACA 1 cut(s) 542
BstBAI YACGTR 1 cut(s) 329
BstC8I GCNNGC 3 cut(s) 341, 731, 782
BstDEI CTNAG 4 cut(s) 159, 399, 591, 876
BstDSI CCRYGG 1 cut(s) 839
BstF5I GGATG 2 cut(s) 416, 880
BstKTI GATC 5 cut(s) 21, 25, 82, 88, 496
BstMAI GTCTC 2 cut(s) 464, 587
BstMBI GATC 5 cut(s) 18, 22, 79, 85, 493
BstMWI GCNNNNNNNGC 1 cut(s) 704
BstNI CCWGG 2 cut(s) 432, 788
BstNSI RCATGY 1 cut(s) 733
BstSCI CCNGG 3 cut(s) 170, 430, 786
BstV1I GCAGC 2 cut(s) 570, 782
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
Bsu15I ATCGAT 1 cut(s) 21
BsuRI GGCC 1 cut(s) 339
BsuTUI ATCGAT 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 839
BtgZI GCGATG 1 cut(s) 450
BtsCI GGATG 2 cut(s) 416, 880
BtsI GCAGTG 1 cut(s) 749
BtsIMutI CAGTG 7 cut(s) 98, 427, 513, 541, 559, 565, 749
Cac8I GCNNGC 3 cut(s) 341, 731, 782
CaiI CAGNNNCTG 1 cut(s) 215
CciI TCATGA 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 642
ClaI ATCGAT 1 cut(s) 21
Csp6I GTAC 2 cut(s) 300, 543
CspAI ACCGGT 1 cut(s) 292
CviAII CATG 6 cut(s) 77, 359, 730, 734, 834, 840
CviQI GTAC 2 cut(s) 300, 543
DdeI CTNAG 4 cut(s) 159, 399, 591, 876
DpnI GATC 5 cut(s) 20, 24, 81, 87, 495
DpnII GATC 5 cut(s) 18, 22, 79, 85, 493
Eam1104I CTCTTC 1 cut(s) 398
EarI CTCTTC 1 cut(s) 398
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 839
Eco24I GRGCYC 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 642
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 2 cut(s) 656, 693
EcoICRI GAGCTC 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 430, 786
EcoT14I CCWWGG 1 cut(s) 839
EcoT22I ATGCAT 1 cut(s) 735
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 839
FaeI CATG 6 cut(s) 80, 362, 733, 737, 837, 843
FaiI YATR 9 cut(s) 78, 360, 684, 701, 731, 735, 835, 841, 851
FatI CATG 6 cut(s) 76, 358, 729, 733, 833, 839
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 3 cut(s) 337, 584, 771
FokI GGATG 2 cut(s) 403, 867
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 3 cut(s) 337, 584, 771
FspBI CTAG 1 cut(s) 344
GluI GCNGC 3 cut(s) 337, 584, 771
GsaI CCCAGC 1 cut(s) 758
GsuI CTGGAG 3 cut(s) 206, 250, 489
HaeIII GGCC 1 cut(s) 339
HapII CCGG 2 cut(s) 171, 293
Hin1II CATG 6 cut(s) 80, 362, 733, 737, 837, 843
HindIII AAGCTT 1 cut(s) 636
HinfI GANTC 3 cut(s) 260, 308, 370
HpaII CCGG 2 cut(s) 171, 293
HphI GGTGA 1 cut(s) 315
Hpy166II GTNNAC 3 cut(s) 543, 545, 631
Hpy188I TCNGA 5 cut(s) 313, 400, 498, 622, 712
Hpy188III TCNNGA 5 cut(s) 77, 83, 209, 491, 692
Hpy8I GTNNAC 3 cut(s) 543, 545, 631
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 2 cut(s) 58, 102
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 5 cut(s) 318, 609, 733, 746, 780
HpyF10VI GCNNNNNNNGC 1 cut(s) 704
HpyF3I CTNAG 4 cut(s) 159, 399, 591, 876
HpySE526I ACGT 1 cut(s) 328
Hsp92II CATG 6 cut(s) 80, 362, 733, 737, 837, 843
Kzo9I GATC 5 cut(s) 18, 22, 79, 85, 493
LmnI GCTCC 3 cut(s) 187, 195, 231
Lsp1109I GCAGC 2 cut(s) 570, 782
LweI GCATC 4 cut(s) 259, 337, 685, 755
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 328
MaeIII GTNAC 2 cut(s) 424, 722
MalI GATC 5 cut(s) 20, 24, 81, 87, 495
MboI GATC 5 cut(s) 18, 22, 79, 85, 493
MboII GAAGA 3 cut(s) 141, 415, 494
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 2 cut(s) 192, 236
MluCI AATT 4 cut(s) 114, 145, 412, 454
MlyI GAGTC 2 cut(s) 317, 364
MmeI TCCRAC 1 cut(s) 657
MnlI CCTC 3 cut(s) 84, 252, 355
Mph1103I ATGCAT 1 cut(s) 735
MseI TTAA 1 cut(s) 886
MslI CAYNNNNRTG 1 cut(s) 838
MspA1I CMGCKG 2 cut(s) 583, 773
MspI CCGG 2 cut(s) 171, 293
MspR9I CCNGG 3 cut(s) 172, 432, 788
Mva1269I GAATGC 1 cut(s) 782
MvaI CCWGG 2 cut(s) 432, 788
MwoI GCNNNNNNNGC 1 cut(s) 704
NciI CCSGG 1 cut(s) 172
NcoI CCATGG 1 cut(s) 839
NdeII GATC 5 cut(s) 18, 22, 79, 85, 493
NlaIII CATG 6 cut(s) 80, 362, 733, 737, 837, 843
NlaIV GGNNCC 1 cut(s) 644
NsiI ATGCAT 1 cut(s) 735
NspI RCATGY 1 cut(s) 733
PaeI GCATGC 1 cut(s) 733
PagI TCATGA 1 cut(s) 76
PctI GAATGC 1 cut(s) 782
PfeI GAWTC 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 296
PinAI ACCGGT 1 cut(s) 292
PkrI GCNGC 3 cut(s) 338, 585, 772
PleI GAGTC 2 cut(s) 316, 364
PpsI GAGTC 2 cut(s) 316, 364
Ppu21I YACGTR 1 cut(s) 329
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 2 cut(s) 430, 786
PspFI CCCAGC 1 cut(s) 754
PspGI CCWGG 2 cut(s) 430, 786
PspN4I GGNNCC 1 cut(s) 644
PspPI GGNCC 1 cut(s) 642
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 1 cut(s) 493
RsaI GTAC 2 cut(s) 301, 544
RsaNI GTAC 2 cut(s) 300, 543
RseI CAYNNNNRTG 1 cut(s) 838
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 1 cut(s) 886
SatI GCNGC 3 cut(s) 337, 584, 771
Sau3AI GATC 5 cut(s) 18, 22, 79, 85, 493
Sau96I GGNCC 1 cut(s) 642
SchI GAGTC 2 cut(s) 317, 364
ScrFI CCNGG 3 cut(s) 172, 432, 788
SduI GDGCHC 2 cut(s) 192, 236
SetI ASST 9 cut(s) 186, 192, 226, 230, 331, 550, 599, 640, 789
SfaNI GCATC 4 cut(s) 259, 337, 685, 755
SinI GGWCC 1 cut(s) 642
SmiMI CAYNNNNRTG 1 cut(s) 838
SphI GCATGC 1 cut(s) 733
Sse9I AATT 4 cut(s) 114, 145, 412, 454
SsiI CCGC 4 cut(s) 336, 581, 666, 773
SspMI CTAG 1 cut(s) 344
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 3 cut(s) 170, 430, 786
StyI CCWWGG 1 cut(s) 839
TaaI ACNGT 2 cut(s) 58, 102
TaiI ACGT 1 cut(s) 331
TaqI TCGA 3 cut(s) 21, 52, 490
TasI AATT 4 cut(s) 114, 145, 412, 454
TatI WGTACW 1 cut(s) 542
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 886
Tru9I TTAA 1 cut(s) 886
TscAI CASTG 7 cut(s) 105, 427, 513, 541, 559, 565, 756
TseI GCWGC 2 cut(s) 583, 770
TspDTI ATGAA 6 cut(s) 384, 405, 558, 591, 750, 822
TspRI CASTG 7 cut(s) 105, 427, 513, 541, 559, 565, 756
Van91I CCANNNNNTGG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 642
XapI RAATTY 1 cut(s) 412
XceI RCATGY 1 cut(s) 733
XmiI GTMKAC 1 cut(s) 630
XspI CTAG 1 cut(s) 344
Zsp2I ATGCAT 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.